BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21960.1
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932140 jgi|Araly1|932140|scaffold_400128.1 1679 0.0
> Ahg932140 jgi|Araly1|932140|scaffold_400128.1
Length=1049
Score = 1679 bits (909), Expect = 0.0
Identities = 1005/1051 (96%), Gaps = 7/1051 (1%)
Strand=Plus/Plus
Query 121 TTTTCTTGAGAACtttttttGAAG-AGTTATGATTGCATTAGCTGCTTCTTCGTTGGGGA 179
|||||||||||| |||||||||| || ||||||||||||| ||| ||||||||||||||
Sbjct 2 TTTTCTTGAGAA--TTTTTTGAAGAAG-TATGATTGCATTAACTGTTTCTTCGTTGGGGA 58
Query 180 ATACACCGATTGCTTCGTTTAACCGTCATTTTAGATTCCGGTTACATCCACGAAACCCTC 239
|||| ||||||||| |||||||||| | ||| ||||||||||||||||||||||||||||
Sbjct 59 ATACTCCGATTGCTACGTTTAACCGGCGTTTCAGATTCCGGTTACATCCACGAAACCCTC 118
Query 240 TGATACAAGCAGCGGTTTCACCTTCGTC-T--TCTTCTTCTTCTCCTACTGCTTCATCTG 296
|||||||||||||||||| ||||| || | ||||||||||||||||||||| ||||||
Sbjct 119 CGATACAAGCAGCGGTTTCTCCTTCTTCATCCTCTTCTTCTTCTCCTACTGCTGCATCTG 178
Query 297 GCTTTGATTTGAGTTCTCTCGAATCCGCCATTAACAAGAAAGATAGTAATGGTGTTAAGG 356
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GGTTTGATTTGAGTTCTCTCGAATCCGCCATTAACAAGAAAGATAGTAATGGTGTTAAGG 238
Query 357 AAGCTCTCGATAAATTGAGTGAAGAAGGTTGGGCTAAGAAATGGAGCTCCCAGCCGTATC 416
||||||| |||||||||| |||| |||||||||||||||||||||| |||||||||||||
Sbjct 239 AAGCTCTAGATAAATTGAATGAACAAGGTTGGGCTAAGAAATGGAGTTCCCAGCCGTATC 298
Query 417 TTTCGCGCCGTACGACATCACTGCGGGAGCTGACAACTCTCGGTATCAAGAATGCAGAGA 476
||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 299 TTTCGCGCCGTACGACATCGCTTCGGGAGCTGACAACTCTCGGAATCAAGAATGCAGAGA 358
Query 477 CTCTGGCCATCCCTAGTGTCAGGAACGATGCGGCTTTTCTTTTCACAGTAGTCGGATCAA 536
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 359 CTCTTGCCATCCCTAGTGTCAGGAACGATGCGGCTTTTCTTTTCACGGTAGTCGGAACAA 418
Query 537 CTGGGTTCATAGCTGTACTTGCCGGCCAACTTCCCGGGGACTGGGGATTCTTTGTGCCTT 596
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CCGGGTTCATAGCTGTACTTGCCGGCCAACTTCCCGGGGACTGGGGATTCTTTGTGCCTT 478
Query 597 ACTTAGTTGGGAGCATTTCGTTGGTAGTTTTAGCCGTGGGAAGCGTTTCACCAGGGCTTC 656
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 479 ACTTAGTTGGGAGCATTTCGTTGGTAGTTTTAGCTGTGGGAAGCGTTTCACCAGGGCTTC 538
Query 657 TTCAAGCTGCGATTTCCGGGTTTTCGACGTTCTTCCCTGATTATCAAGAACGAATTGCTG 716
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 539 TTCAAGCTGCGATTTCCGGGTTTTCTACGTTCTTCCCTGATTATCAAGAAAGAATTGCTG 598
Query 717 CACATGAAGCAGCCCACTTCTTAGTGGCTTACTTAATCGGGCTTCCAATCCTCGGGTACT 776
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 599 CACATGAAGCAGCCCACTTCTTAGTGGCTTACTTAATCGGACTTCCAATCCTCGGGTACT 658
Query 777 CGTTAGACATCGGTAAAGAACATGTCAATCTCATTGACGAGAGACTAGCTAAACTAATAT 836
| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 659 CCTTAGACATCGGTAAAGAACACGTCAATCTCATCGACGAGAGACTAGCTAAACTAATAT 718
Query 837 ACAGCGGCAAGCTTGACTCAAAGGAGCTCGATAGGTTGGCTGCTGTTGCAATGGCTGGAC 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ACAGCGGCAAGCTTGACTCAAAGGAGCTCGATAGGTTGGCTGCTGTTGCAATGGCTGGAC 778
Query 897 TTGCCGCCGAGGGTCTGAAGTATGACAAAGTAATTGGCCAATCTGCAGATCTCTTCTCTC 956
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 779 TTGCCGCCGAGGGTCTGAAGTATGACAAAGTGATCGGCCAATCTGCAGATCTCTTCTCTC 838
Query 957 TTCAGAGATTCATAAACAGAAGCCAACCCAAAATCAGCAACGAGCAGCAGCAAAATCTAA 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTCAGAGATTCATAAACAGAAGCCAACCCAAAATCAGCAACGAGCAGCAGCAAAATCTAA 898
Query 1017 CAAGATGGGCTGTTCTTTACTCTGCTTCTCTTCTCAAAAACAACAAGACCATCCATGAAG 1076
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 899 CAAGATGGGCTGTTCTCTACTCTGCTTCTCTTCTCAAAAACAACAAGAACATCCATGAAG 958
Query 1077 CTCTAATGGCTGCAATGTCCAAAAATGCATCTGTTCTTGAATGCATTCAAACCATTGAGA 1136
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 959 CTCTAATGGCTGCAATGTCCAAAAATGCAACTGTTCTTGAATGCATTCAAACCATCGAGA 1018
Query 1137 CAGCTTCCTAGATGAACAATCTCTGTTATCT 1167
||||||||||||| ||||||||| ||| |||
Sbjct 1019 CAGCTTCCTAGATAAACAATCTCGGTTCTCT 1049
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47844260835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5