BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G21990.1
Length=1309
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481063 jgi|Araly1|481063|fgenesh2_kg.4__123__AT2G21990.1 1823 0.0
> Ahg481063 jgi|Araly1|481063|fgenesh2_kg.4__123__AT2G21990.1
Length=1301
Score = 1823 bits (987), Expect = 0.0
Identities = 1222/1328 (92%), Gaps = 46/1328 (3%)
Strand=Plus/Plus
Query 1 AACTCGTTTGATTTGTTTTCACATGTCGTGAAATTTACAGCTTTGTTTCCTACTCTCAAA 60
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||
Sbjct 1 AACTCGTTTGATTTGTTTTCACATGTTTTGAAATATACAGCTTTGTTTCCTACTCTTAAA 60
Query 61 AATAGAGCATAGAGCTGGCTGATCACACTTCAAATTAAAACCAACAAC-GTATATAAACT 119
||||||||||||||||||||||| |||||||||| ||||| ||||||| ||||||||||
Sbjct 61 AATAGAGCATAGAGCTGGCTGATTACACTTCAAAATAAAAACAACAACTATATATAAACT 120
Query 120 ATAACC-C-ATGTGAACACAAAAATTTAGACCTTTTTTCAAAACCATTCCAATTTCTAAC 177
|||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 ATAACCACAATGTGAACACAAAAATTTAGACCTTTTTCCAAAACCATTCCAATTTCTAAC 180
Query 178 ---AAAAACAAAATTAGAAATCCTAAAATCTGC-AAGGTGTATGGAAGGCAAAAAAGGCT 233
||||||||||||||||||||||||| || | |||||| | | | ||||||
Sbjct 181 AAAAAAAACAAAATTAGAAATCCTAAAAACT-CAAAGGTG--T-G--TG----AAAGGC- 229
Query 234 AACAGGATTAAAAACAGTTTACATTAGTTATTCTCTTTAAAATAGAAAGAAGATTTTCGA 293
|| | | | ||| ||| |||| | |||||||||||||||||||| ||||| |
Sbjct 230 AA-A--A-T----ACA--TTA-ATTA---A-CCTCTTTAAAATAGAAAGAAGTTTTTCAA 274
Query 294 TAAAAACGTCGTCGTATCTTCGTCGACGTCTCCGTCTTTAATGGGGGAGC--A----AAG 347
|||||||||||||||||| ||||||||||||||||| ||||||||||||| | |||
Sbjct 275 TAAAAACGTCGTCGTATCCTCGTCGACGTCTCCGTCGTTAATGGGGGAGCAAAGGCCAAG 334
Query 348 GGCAAGCGGTGCTTCCTCCTCCACCGACTCATATTCAACTCCTTCGCCGTCTGCGTCACC 407
||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||
Sbjct 335 GGCAAGCGGTGCTTCCTCCTCCACCGACTCATATTCAACCCCTTCGCGGTCTCCGTCACC 394
Query 408 GTCTCCATCTCCGGCTCCACGTCAACATGTCACGTTACTCGAACCATCTCATCAACACAA 467
||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 395 GTCTCCATCTCCGGCGCCACGTCACCATGTCACGTTACTCGAACCATCTCATCAAAACAA 454
Query 468 GAAGAAAAGCAAAAAAGTCTTCCGAGTTTTTCGTTCGGTTTTCCGATCTTTCCCGATCAT 527
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 455 GAAGAAAAGCAAAAAAGTCTTCCGAGTTTTTCGTTCGGTTTTCCGTTCTTTCCCGATCAT 514
Query 528 CACACCGGCAGCTTGCAAAATCCCGGTCCTCCCCGGCGGTAGCTTACCTGACCAGCACCG 587
||||||||||||||||||||||||||||||||| |||||||||||||| |||| || ||
Sbjct 515 CACACCGGCAGCTTGCAAAATCCCGGTCCTCCCAGGCGGTAGCTTACCCGACCCTCATCG 574
Query 588 AAGCGGGTCAAGCGGATCAAGAGTTACCGGAACCTTATTCGGATACCGTAAAGGCCGTGT 647
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 575 AAGCGGATCAAGCGGATCAAGAGTTACAGGAACCTTGTTCGGATACCGTAAAGGCCGTGT 634
Query 648 AAGCCTCTCGATTCAAGAAAGCCCTAGATGTTTACCATCTCTCGTCGTCGAGCTCGCAAT 707
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 635 AAGCCTCTCGATTCAAGAAAGCCCTAGATGTTTACCATCTCTCGTCGTCGAGCTTGCGAT 694
Query 708 GCAAACAATGGTGCTACAAAAAGAGCTTAGCGGAGGGATGGTTAGGATCGCGTTAGAGAC 767
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 695 GCAAACAATGGTGCTACAAAAAGAACTTAGCGGAGGGATGGTTAGGATCGCGTTAGAGAC 754
Query 768 AGAGAAACGAGGTGATAAAGAGAAGATCAAGATCATGGACGAGCCATTATGGACAATGTT 827
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 755 AGAGAAACGAGGTGATAAAGAGAAGACCAAGATCATGGACGAGCCATTATGGACAATGTT 814
Query 828 TAGTAACGGTAAGAAAACGGGGTACGGTGTGAAACGTGACGCGACGGAGGAAGACCTCAA 887
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 815 TTGTAACGGTAAGAAAACGGGGTACGGTGTGAAACGTGACGCGACGGAGGAAGATCTCAA 874
Query 888 CGTTATGGAGCTATTAAGACCGGTTTCGATGGGTGCCGGAGTTTTGCCAGGGAACACGGA 947
|||||||||| | |||||||| |||||||||||||||||||||||||| |||||| ||||
Sbjct 875 CGTTATGGAGTTGTTAAGACCAGTTTCGATGGGTGCCGGAGTTTTGCCGGGGAACTCGGA 934
Query 948 GTTTGAAGGACCAGACTCGGAGATGGCTTACATGAGGGCTTACTTCGAACGAGTCGTTGG 1007
| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 935 GGTTGAAGGACCTGACTCGGAGATGGCTTACATGAGGGCTTATTTCGAACGAGTCGTTGG 994
Query 1008 GTCTAAAGATTCAGAGACATTTTATATGTTGAGTCCCGAAGGAAATAATGGACCAGAACT 1067
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 995 GTCTAAAGATTCAGAGACATTTTACATGTTGAGTCCCGAAGGAAATAATGGACCCGAACT 1054
Query 1068 TAGTATCTTCTTCGTAAGAGTATGATTTGATGTAATATATGGTCGGAG-A-A-ATGCGTT 1124
|||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 1055 TAGTATCTTCTTCGTAAGAGTATGATTTGATGTAATATATGGTCGGAGGAGATATGCGTT 1114
Query 1125 CTTGATCGATCTCAGTTTGTGGATTGATATGTGATTATATGATCAT-ATTGATATGTGTG 1183
||||| ||| | |||| |||||||| ||||||||||||||||| || ||||||||||
Sbjct 1115 GTTGATTGATAGCGGTTTAAGGATTGATTTGTGATTATATGATCATGAT-GATATGTGTG 1173
Query 1184 TATATGCGTGGGTCCTTTTGGTGGTGAGGTATATGAGGATGGATTTGGAGGTAATATTGT 1243
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1174 TATATGCATGGGTCCTTTTGGTGGTGAGGTATATGAGGACGGATTTGGAGGTAATATTGT 1233
Query 1244 TCTTTAGGATGATTTATa-aaaaaa-GTGTTTCAGGTTAATACATACAAATTAATTCACG 1301
|||||||||||||||||| |||||| |||||||||||| |||||| |||| |||||||||
Sbjct 1234 TCTTTAGGATGATTTATATAAAAAAAGTGTTTCAGGTTGATACATGCAAACTAATTCACG 1293
Query 1302 TTTGATTT 1309
||||||||
Sbjct 1294 TTTGATTT 1301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48949825428
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5