BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G22000.1

Length=612
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481064 jgi|Araly1|481064|fgenesh2_kg.4__124__AT2G22000.1          778    0.0  


> Ahg481064 jgi|Araly1|481064|fgenesh2_kg.4__124__AT2G22000.1
Length=596

 Score =  778 bits (421),  Expect = 0.0
 Identities = 558/619 (90%), Gaps = 30/619 (5%)
 Strand=Plus/Plus

Query  1    AGAGAAGCAGGTGAGGTCAAACTAGACACAACACTTAATGCATTGAGCagaagaagaaga  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    AGAGAAGCAGGTGAGGTCAAACTAGACACAACACTTAATGCATTGAGCAGAAGAAGAAGA  60

Query  61   agaagaagaattaagaagagaaagaaaacaaaaaaca----tggaagttaatggagaaga  116
             |  ||||||||||||||||||||||||||||||| |    |||||||||| ||||||||
Sbjct  61   -G--GAAGAATTAAGAAGAGAAAGAAAACAAAAAATAAGGATGGAAGTTAAAGGAGAAGA  117

Query  117  agagagaagaagtagaagagaagatgaagaaaaagaagaTTACTACTACTCTCTTCTCAA  176
            |||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||
Sbjct  118  AGAGAGAAGAAGTAGAAGAGAAGATGAAGAAAAAGAAGATTA-T--TACTCTCTTCTCAA  174

Query  177  CTCTCCATGTTCTGTTTGTAACAAATTTGTTCAAGCCATATTGAAGTGTCTTGGTCTTGA  236
            |||||||||||||| |||| ||||| ||||| |||||||||||||||||||||| |||||
Sbjct  175  CTCTCCATGTTCTGCTTGTCACAAAGTTGTTAAAGCCATATTGAAGTGTCTTGGCCTTGA  234

Query  237  GtcatcatcaataccaccatcttcatcatcatcatcaccatcCTTAGTAGAAGAAGAAGA  296
            ||||||||||||||||||| | ||||| ||||| ||| |||| |||| ||||||||||||
Sbjct  235  GTCATCATCAATACCACCACCATCATCCTCATCTTCATCATCATTAGAAGAAGAAGAAGA  294

Query  297  TTCAGGAACTGAAACTGTTGAAGAAACAGGATTTATGGCGAGGATAACAGCAGTGTTAAG  356
            | |||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||
Sbjct  295  TCCAGGAACTGAAACTGTTGAAGAAACAGGATTTATTGCGAGGATTACAGGAGTGTTAAG  354

Query  357  AAGGAGACCAAGACCACCACCTTATAGCTCAGGACGACCTGGTCAAAACAATTGATTCTG  416
            ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||
Sbjct  355  AAGGAGACCAAGACCACC---TTATAGCTCAGGACGACCTGGTCAAAACAATTGATTCTG  411

Query  417  ATTAACACTCCTGAA--GACAAGCTTGTGTCTCTCCGTGTGGATCTTCTTGTTGTTTAAA  474
            |||||||||| | ||  ||||||||| |||||||  |||||  |||||||||||||||||
Sbjct  412  ATTAACACTCTTAAAAAGACAAGCTTATGTCTCTTTGTGTG--TCTTCTTGTTGTTTAAA  469

Query  475  ATTCACTTATGATCtttatttttttttaccatttttttggttatgtgagcggttt-gctt  533
            | |||||| ||||||| ||||||||||           |||| ||| |||||||| ||||
Sbjct  470  ACTCACTTGTGATCTTCATTTTTTTTT-----------GGTTCTGTCAGCGGTTTTGCTT  518

Query  534  tttttttCTTCTTAATTTATCTGAAATAAGACAAAATTGGTAAGACTCTTTTGTAAAATA  593
            ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  519  TTTTTTT-TTCTTTATTTATCTGAAATAAGACAAAATTGGTAAGACTCTTTTGTAACATA  577

Query  594  GTTTTCATGTTTACCTTCT  612
            | |||||||||||||||||
Sbjct  578  GATTTCATGTTTACCTTCT  596



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22378152279


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5