BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22040.1
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
Ahg479304 jgi|Araly1|479304|fgenesh2_kg.3__2005__AT3G18140.1 953 0.0
Ahg343760 jgi|Araly1|343760|fgenesh1_pg.C_scaffold_4000102 872 0.0
> Ahg479304 jgi|Araly1|479304|fgenesh2_kg.3__2005__AT3G18140.1
Length=1197
Score = 953 bits (516), Expect = 0.0
Identities = 846/1000 (85%), Gaps = 43/1000 (4%)
Strand=Plus/Plus
Query 36 TCTCGCAACAGCAAGCCATGATCAAACCATCCGATTATGGCAAGCCCG-AACCGGTCGCT 94
||| || ||||| ||| ||||||| || || ||||| ||| ||| ||| ||| |||||||
Sbjct 160 TCTTGCTACAGCTAGCTATGATCACACGATTCGATTCTGGGAAG-CCGAAACTGGTCGCT 218
Query 95 GTTACTTTTCCTTTC-GCTATCCTGATTTGCATGTGAATAGGCTTGAGCTAACCCCTGAA 153
||||| | || ||| | |||||||||| |||||| |||||||||||| ||||||| ||
Sbjct 219 GTTACCGTACCATTCAG-TATCCTGATTCGCATGTAAATAGGCTTGAGATAACCCCAGAT 277
Query 154 AAGGGTAAACTAG-TAGCAGCTTGCAATCCTCACATACGACTCTTTGATCTCAGA-TCCT 211
||| || | |||| | |||||||| |||||||| ||||| || |||||| ||| | |||
Sbjct 278 AAGCGTTATCTAGCT-GCAGCTTGTAATCCTCATATACGGCTTTTTGATGTCA-ATTCCA 335
Query 212 ACAACCCTCATATACCTGTGAGGAATTTTGTA-TCACACACCAAAAATGTTATGGCGGTA 270
||| |||| | |||||||| || || || | ||||||||||| ||||||||||| |||
Sbjct 336 ACAGTCCTC--A-ACCTGTGATGACTTATG-ATTCACACACCAACAATGTTATGGCAGTA 391
Query 271 GGATTCCAATAT-ACT-GGACACAT-GATGTATTCAGGGTCAGAAGATGGCTCTGTTAAG 327
|||||||||| | | | ||| | || |||||||||||| ||||| |||||| | ||||||
Sbjct 392 GGATTCCAATGTGA-TGGGA-A-ATGGATGTATTCAGGATCAGAGGATGGCACAGTTAAG 448
Query 328 ATCTGGGACTTGAGGGTTCGAGAATGCCAAAGGGAGT-TTAGAAGTGTTTCAC-CAGTTA 385
|||||||||||||||| || | ||||||| ||||| | | ||||||| | | ||||||
Sbjct 449 ATCTGGGACTTGAGGGCTCCCGGTTGCCAAAAGGAGTATGA-AAGTGTTGC-CGCAGTTA 506
Query 386 ACACAGTTGTTTTACACCCAAATCAGACTGAATTGATATCTGGAGACCAAAACGGTAATA 445
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 507 ACACTGTTGTTTTACACCCAAATCAGACTGAATTGATATCTGGAGACCAAAATGGAAATA 566
Query 446 TACGTGTATGGGATCTCAGAGCAGATTTGTGTAGCTGTGAACTGGTACCAGAAGTCGGTA 505
||||||||||||||||||||||| ||| |||||| |||||||||||||||||||| | ||
Sbjct 567 TACGTGTATGGGATCTCAGAGCAAATTCGTGTAGTTGTGAACTGGTACCAGAAGTTGATA 626
Query 506 CACCTATACGGTCTTTAACGGTTATGTGGGATGGGACAATGGTGGTTGCTGCTAACGACC 565
|| || |||||||||| ||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 627 CAGCTGTACGGTCTTTGACGGTTATGTGGGATGGTACAATGGTGGTTGCTGCTAACAACC 686
Query 566 GTGGAACATGTTATGTATGGCGCTCCTTGTGTG-AAAGACAAACGATGACCGAGTTTGAG 624
|||||||||||||||| ||||||| ||| ||| ||| ||| |||||||||||||||||
Sbjct 687 GTGGAACATGTTATGTGTGGCGCTTGTTGCGTGGAAA-ACAGACGATGACCGAGTTTGAA 745
Query 625 CCCCTTCATAAGCTACAAGCTCATAATAGCCACATCCTTAAATGTCTCCTTTCTCCTGGA 684
|||||||||||||| |||||||||||| |||||||||||||||| || || ||||||| |
Sbjct 746 CCCCTTCATAAGCTGCAAGCTCATAATGGCCACATCCTTAAATGCCTTCTCTCTCCTGCA 805
Query 685 AACAACAGATATCTAGCGACCGCATCATCTGATAAAACAGTCAAAATATGGAACCTTGAT 744
||||| | |||||||| |||| ||| ||||||||||| ||||||||||||||| | |||
Sbjct 806 AACAA--G-TATCTAGCAACCGTATCGTCTGATAAAACCGTCAAAATATGGAACGTCGAT 862
Query 745 GGTTTCAAACTTGAGAAAGTTTTAACAGGTCATGAAAGATGGGTATGGGACTGTGACTTC 804
||||||||||| ||||||||||||||||| ||| |||||||||| |||||||| | ||||
Sbjct 863 GGTTTCAAACTAGAGAAAGTTTTAACAGGACATCAAAGATGGGTCTGGGACTGCGTCTTC 922
Query 805 TCAATGGATGGAGAATATCTTGTAACAGCATCATCGGACACCACGGCTAGATTGTGGTCG 864
||| |||||||||||| |||||| || |||||||| |||| ||||||||||||||||||
Sbjct 923 TCAGTGGATGGAGAATTTCTTGTTACCGCATCATCTGACATGACGGCTAGATTGTGGTCG 982
Query 865 ATGCGAGCGGGAAAAGAAGAGATGGTGTACCAAGCTCATCGCAAAGCTACTGTGTGTTGT 924
|||| |||||| ||||||| || ||| ||||||| ||||| |||||| |||||||| |||
Sbjct 983 ATGCCAGCGGGTAAAGAAGTGAAGGTATACCAAGGTCATCACAAAGCCACTGTGTGCTGT 1042
Query 925 ACACTACTGCGTGATTAAATCCTGT-AA-AATTA-TCAA---AAA----GGATAAATTAT 974
|||| | || |||||| ||| | || ||||| | || ||| ||| ||| ||
Sbjct 1043 GCACTCCA-CG--ATTAAAACCTTTTAAGAATTAATGAAGCTAAATTATGGACAAACTAC 1099
Query 975 GATTGTGTTGTTTGTGTTTTAGACAAA-TCTTGTACATTT 1013
||||||||| ||||||||||||| ||| ||||||||||||
Sbjct 1100 GATTGTGTTATTTGTGTTTTAGA-AAACTCTTGTACATTT 1138
> Ahg343760 jgi|Araly1|343760|fgenesh1_pg.C_scaffold_4000102
Length=999
Score = 872 bits (472), Expect = 0.0
Identities = 563/606 (93%), Gaps = 9/606 (1%)
Strand=Plus/Plus
Query 340 AGGGTTCGAGAATGCCAAAGGGAGTTTAGAAGTGTTTCACCAGTTAACACAGTTGTTTTA 399
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 400 AGGGTTCGAGAATGCCAAAGGGAGTTTAGAAGTGTTTCACCAATTAACACAGTCGTTTTA 459
Query 400 CACCCAAATCAGACTGAATTGATATCTGGAGACCAAAACGGTAATATACGTGTATGGGAT 459
||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 460 CACCCAAATCAGACTGAATTGATATCTGGTGACCAAAACGGAAATATACGTGTGTGGGAT 519
Query 460 CTCAGAGCAGATTTGTGTAGCTGTGAACTGGTACCAGAAGTCGGTACACCTATACGGTCT 519
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 520 CTCAGAGCAGATTTGTGTAGCTGTGAACTGGTACCAGAAGTTGGTACACCTATACGGTCT 579
Query 520 TTAACGGTTATGTGGGATGGGACAATGGTGGTTGCTGCTAACGACCGTGGAACATGTTAT 579
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 580 TTAACGGTTATGTGGGATGGGACAATGGTGGTTGCTGCTAACGAACGTGGAACATGTTAT 639
Query 580 GTATGGCGCTCCTTGTGTGAAAGACAAACGATGACCGAGTTTGAGCCCCTTCATAAGCTA 639
||||||||||| ||| | || |||||||||||| ||||||||||||||||||||||||
Sbjct 640 GTATGGCGCTCTTTGCAAGGAATACAAACGATGACGGAGTTTGAGCCCCTTCATAAGCTA 699
Query 640 CAAGCTCATAATAGCCACATCCTTAAATGTCTCCTTTCTCCTGGAAACAACAGATATCTA 699
|||||||||||| || ||||||||||||||||||| |||||||||||||| | ||||||
Sbjct 700 CAAGCTCATAATGGCTACATCCTTAAATGTCTCCTCTCTCCTGGAAACAA-A--TATCTA 756
Query 700 GCGACCGCATCATCTGATAAAACAGTCAAAATATGGAACCTTGATGGTTTCAAACTTGAG 759
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 757 GCGACCGCATCATCTGATAAAACTGTCAAAATATGGAACGTTGATGGTTTCAAACTTGAG 816
Query 760 AAAGTTTTAACAGGTCAT-GAAAGATGGGTATGGGACTGTGACTTCTCAATGGA-TGGAG 817
|||||||||||||| ||| ||| ||||||| ||||||||||||||||||| ||| |||||
Sbjct 817 AAAGTTTTAACAGGACATCGAA-GATGGGTCTGGGACTGTGACTTCTCAA-GGAATGGAG 874
Query 818 AATATCTTGTAACAGCATCATCGGACACCACGGCTAGATTGTGGTCGATGCGAGCGGGAA 877
|||||||||| || |||||||| |||| |||||||||||||||||||||| |||||| |
Sbjct 875 AATATCTTGTTACCGCATCATCTGACATGACGGCTAGATTGTGGTCGATGCCAGCGGGTA 934
Query 878 AAGAAGAGATGGTGTACCAAGCTCATCGCAAAGCTACTGTGTGTTGTACACTAC-TGCGT 936
|||||| |||||||||||| |||||||||| ||| ||||||||||||||||| | | | |
Sbjct 935 AAGAAGTGATGGTGTACCATGCTCATCGCAGAGCCACTGTGTGTTGTACACTCCGT-CAT 993
Query 937 GATTAA 942
||||||
Sbjct 994 GATTAA 999
Score = 431 bits (233), Expect = 6e-120
Identities = 309/345 (90%), Gaps = 8/345 (2%)
Strand=Plus/Plus
Query 1 ATGTTTGAAAACAAACCGGATGATAGTCCCGTGTATCTCGCAACAGCAAGCCATGATCAA 60
|||||||||||||| ||||||||| ||||| ||| ||||||||| || ||| |||||||
Sbjct 1 ATGTTTGAAAACAATCCGGATGATCGTCCCTTGTTTCTCGCAACGGCGAGCTATGATCAT 60
Query 61 ACCATCCGATTATGGCAAGCCCGAACCGGT-CGCTGTTACTTTTCCTTTCG-CTATCCTG 118
||||| ||||||||| |||||||||||||| | ||||||| ||| |||| | ||||||||
Sbjct 61 ACCATTCGATTATGGGAAGCCCGAACCGGTAC-CTGTTACCTTT-CTTTTGCCTATCCTG 118
Query 119 ATTTGCATGTGAATAGGCTTGAGCTAACCCCTGAAAAGGGTAAACTAGTAGCAGCTTGCA 178
|| |||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||
Sbjct 119 ATATGCATGTGAATAGGCTTGAGATAACCCCTGATAAGGGTAAACTTGTAGCAGCTTGCA 178
Query 179 ATCCTCACATACGACTCTTTGATCTCAGAT-CCTACAACCC-TCATATACCTGTGAGGAA 236
||||||||||||||||||||||||||| || || | ||| |||| ||||||||||||
Sbjct 179 ATCCTCACATACGACTCTTTGATCTCA-ATTCC-ATGGCCCCTCATTTACCTGTGAGGAC 236
Query 237 TTTTGTATCACACACCAAAAATGTTATGGCGGTAGGATTCCAATATACTGGACACATGAT 296
||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 237 TTTTGAATCACACACCAACAATGTTATGGCAGTAGGATTCCAATATACTGGACAAATGAT 296
Query 297 GTATTCAGGGTCAGAAGATGGCTCTGTTAAGATCTGGGACTTGAG 341
||||||||| |||||||||||| | ||||||||||||||||||||
Sbjct 297 GTATTCAGGATCAGAAGATGGCACAGTTAAGATCTGGGACTTGAG 341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40219677435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5