BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G22050.1

Length=1090
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481068 jgi|Araly1|481068|fgenesh2_kg.4__128__AT2G22050.1          405    3e-112


> Ahg481068 jgi|Araly1|481068|fgenesh2_kg.4__128__AT2G22050.1
Length=899

 Score =  405 bits (219),  Expect = 3e-112
 Identities = 252/268 (94%), Gaps = 1/268 (0%)
 Strand=Plus/Plus

Query  1    ATGTCTCCTTCTTCGAAGAAGTTTAAGAAACAATCTTCCTCCAAATCAGTTAAGCCACCG  60
            ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct  1    ATGTCTCCTTCTTCGAAGAAGTTTAAGAAACAATCTTCCTCTAAAGCAGTTAAGCCACCG  60

Query  61   CTAGAAGATAACGATCCGTCCTTGCCATCGTTTACTTCATTGCCCGACGAAATCGTTTTG  120
            |||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| |||
Sbjct  61   CTAGAAGATAACGATCCGTCCTTGCCGTCGTTTTCTTCACTGCCCGACGAAATCGTATTG  120

Query  121  GACTGCTTGCAACGTGTCCCAAGAAGCTATTACCTAAACCTCTGTCGAGTCTCCAAAACC  180
            |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  121  GACTGCTTGCAACGTGTCCCTAGAAGCTATTACCTAAACCTCTGTCGAGTTTCCAAAACC  180

Query  181  CTAAGGTCCCTTGTTCGGTCACCTGAGCTCTCCCGTTTGCGAACTCTCCTCCCAAAGAAT  240
            |||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| 
Sbjct  181  CTAAGGTCCCTTGTTCGGTCGCCTGAGCTCTCCCGTTTGCGATCTCTCCTTCCAAAGAAA  240

Query  241  TCTGTCTACGTCTCCTTCAGCCAAAACA  268
            |||||||| ||||| |||||  ||||||
Sbjct  241  TCTGTCTATGTCTC-TTCAGTGAAAACA  267


 Score =  385 bits (208),  Expect = 4e-106
 Identities = 270/297 (91%), Gaps = 16/297 (5%)
 Strand=Plus/Plus

Query  727   GTTGGGAGAATCGGTGTGTATGATCCGAGAGAAGCAGGGGTTGATGGGTTTTGACGTAAA  786
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  619   GTTGGGAGAATCGGTGTGTATGATCCGAGAGAAGCAGGGGTTGATGGGGTTTGACGTAAA  678

Query  787   GCGCAAGGTATGGGTTAAAGTGGTTGGTTTGAAGACACTTAATGTCAAGTTTGATGTCTC  846
              ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  679   CCGCAAGGTATGGGTTAAAGTGGTTGGTTTAAAGACACTTAATGTCAAGTTTGATGTCTC  738

Query  847   TGTGATGGCGGAGTACGATGGAAAGCTAGCGATTTTGTGGAGTGAGATTGATCAAACGAA  906
             |||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct  739   TGTGATGGCGGAATACGATGGAAAGCTAGCGATTTTGTGGAGTGAGATTGATGACACGAA  798

Query  907   GATGGAGAAGGGATTCGCGGGACGATCGAGTGGTCTGGTATTGTGGCCACAATGACAAAT  966
             || |||||||||||||| |||||||| ||||||||||| ||||||||||||||||     
Sbjct  799   GACGGAGAAGGGATTCGTGGGACGATTGAGTGGTCTGGCATTGTGGCCACAATGA-----  853

Query  967   ATTCATTGTGAGTTTCATAATTGTTTAGTTGTTTCTGATTGATAGTGTTTTGTTGCA  1023
                    ||   || |||||||||||||||||||||||||||||| |||||||||||
Sbjct  854   -------GT---TT-CATAATTGTTTAGTTGTTTCTGATTGATAGGGTTTTGTTGCA  899



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40600906605


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5