BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22055.1
Length=240
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494981 jgi|Araly1|494981|fgenesh2_kg.8__797__AT1G61566.1 311 2e-84
Ahg924873 jgi|Araly1|924873|scaffold_200434.1 261 2e-69
> Ahg494981 jgi|Araly1|494981|fgenesh2_kg.8__797__AT1G61566.1
Length=341
Score = 311 bits (168), Expect = 2e-84
Identities = 196/210 (93%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 1 ATGGGGATGTCAAAAAGTATCAAGGTTATTGTATCTCTTGCTCTCATATTATTTTTGGCC 60
|||||||||||||||||||||||||||||| |||||||||||||| || | ||||||||
Sbjct 1 ATGGGGATGTCAAAAAGTATCAAGGTTATTCTATCTCTTGCTCTCGTACTGTTTTTGGCA 60
Query 61 CTTGCAGCAACCAAGGTTGAAGCCACAAGATACATAAGTTATCGTGGTATGAATCATGGA 120
|||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 61 CTTGCAACAACCAAGGTTGAGGCCACAAGATACATAAGTTATCGTGGTATTAATCATGGA 120
Query 121 GATCATGCTATACATTGTGACAAAGCCCACCCTAACACCTGCAAGAAGCAAGTAGCAAAT 180
||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||
Sbjct 121 GATCATGCTATACATTGTGACAAAGCCCACCCTAATACATGCAAGAAGCAAGAAGCAAAT 180
Query 181 CCTTACAGGAGAGGATGCGGAACAATCGAA 210
|||||||||||||||||||| || |||||
Sbjct 181 CCTTACAGGAGAGGATGCGGGACGCTCGAA 210
> Ahg924873 jgi|Araly1|924873|scaffold_200434.1
Length=285
Score = 261 bits (141), Expect = 2e-69
Identities = 208/241 (86%), Gaps = 2/241 (1%)
Strand=Plus/Plus
Query 1 ATGGGGATGTCAAAAAGTATCAAGGTTATTGTATCTCTTGCTCTCATATTATTTTTGGCC 60
||||||||||| ||||||||||||||||| ||||||||||||| || | || ||||||
Sbjct 23 ATGGGGATGTCTAAAAGTATCAAGGTTATCCTATCTCTTGCTCTTGTAGTGTTCTTGGCC 82
Query 61 CTTGCAGCAACCAAGGTTGAAGCCACAAGATACATAAGTTATCGTGGTATGAATCA-TGG 119
|||||| ||||||||||||| ||||||||||||||| ||||| | |||| ||| | |||
Sbjct 83 CTTGCAACAACCAAGGTTGAGGCCACAAGATACATATCTTATCCTAGTATTAAT-ACTGG 141
Query 120 AGATCATGCTATACATTGTGACAAAGCCCACCCTAACACCTGCAAGAAGCAAGTAGCAAA 179
|||||||||| |||||||||||||||||||||| ||||||| |||| ||| ||||||
Sbjct 142 AGATCATGCTCCACATTGTGACAAAGCCCACCCTCACACCTGTTGGAAGAAAGAAGCAAA 201
Query 180 TCCTTACAGGAGAGGATGCGGAACAATCGAACGTTGCCGTCGTGATACAGGTAGAAAATG 239
|||||||||||||||||||||| ||||| |||||| |||||| || |||||||||||
Sbjct 202 TCCTTACAGGAGAGGATGCGGAGTGCTCGAAGGTTGCCATCGTGAAACTGGTAGAAAATG 261
Query 240 A 240
|
Sbjct 262 A 262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8286852637
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5