BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G22090.2 Length=1507 Score E Sequences producing significant alignments: (Bits) Value Ahg481072 jgi|Araly1|481072|fgenesh2_kg.4__132__AT2G22090.1 1447 0.0 > Ahg481072 jgi|Araly1|481072|fgenesh2_kg.4__132__AT2G22090.1 Length=1272 Score = 1447 bits (783), Expect = 0.0 Identities = 992/1088 (91%), Gaps = 33/1088 (3%) Strand=Plus/Plus Query 3 aaatcaaaaatcaaaatccctaaaaGCTTCTTGACTCGTTTATCCTCTACTACAATGGCG 62 |||||||||||||||||||||||||| | | || |||||||| |||||||||||| Sbjct 1 AAATCAAAAATCAAAATCCCTAAAAG---C-T---TC--TTATCCTCAACTACAATGGCG 51 Query 63 AAAACCCTAGACAAATCTAAGAAGCGCAAACTCGTGAAATCCAAATCCACGAATTTCGAT 122 ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| Sbjct 52 AAAACCCTAGACAAATCTAAGAAACGCAAACTCGTGAAATCCAAATCCAAGAAACTCGAG 111 Query 123 AAGAAACAGAAGATTaacaaacaacaacaacaacCAGAATCCTCAACGCCATATTCAAGT 182 ||||||||||||||| || || ||||||| ||||| || ||||||||||||||| Sbjct 112 AAGAAACAGAAGATT-------AA-AA-AACAACCTGAATCATCGACGCCATATTCAAGT 162 Query 183 TCAAGCTCCAGCTCTGATTCTAGCGATTCCGAATCAGACAACGAATTCGACCCAGAAGAG 242 |||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 163 TCAAGCTCAAGCTCTGATTCTAGCGATTCTGAATCAGACAACGAATTCGATCCAGAAGAG 222 Query 243 CTCCGTGAGCTTCTACAACCTTATTCCAAGGACCAGCTTGTCGATCTAGTTTGTTCCGCT 302 || ||||||||||||| ||||||||||||||||||||| ||||| || |||||||||||| Sbjct 223 CTACGTGAGCTTCTACGACCTTATTCCAAGGACCAGCTCGTCGACCTCGTTTGTTCCGCT 282 Query 303 TCTCGAATCGGATCTTCGATCTATTCCGCCGTCGTAGAAGCCGCAGATCGTGATGTTA-C 361 | | ||||||||| |||||||||||||||||||||||||| |||||||||||||||| | Sbjct 283 GCGCAAATCGGATCCTCGATCTATTCCGCCGTCGTAGAAGCTGCAGATCGTGATGTTATC 342 Query 362 ACACAGGAAAATCTTCGTTTATGGTCTTCCATGGGAGACGACTCGCGAGACTCTTGTTGG 421 || ||||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 343 -CATAGGAAAATCTTCGTTTATGGTCTTCCATGGGAGACGACTCGAGAGACTCTTGTT-G 400 Query 422 A-GTCTTTGAAGGTTATGGTGAGATTGAAGAGTGTACCGTTGTTATAGATAAGGCTACTG 480 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 401 ATGTCTTTGAAGGTTATGGAGAGATTGAAGAGTGTACCGTTGTTATAGATAAGGCTACTG 460 Query 481 GTAAGGCTAAAGGGTTTGGATTTGTTATGTTCAAGACTAGGAAAGGAGCTAAAGAAGCTC 540 ||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| | Sbjct 461 GTAAGGCTAAAGGATTCGGATTTGTTATGTTCAAGACGAGGAAAGGAGCTAAAGAAGCGC 520 Query 541 TTAAAGAACCGAAGAAGAGGATTCTTAATAGAACTGCCACTTGCCAGCTTGCTTCTATGG 600 |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 521 TTAAGGAACCGAAGAAGAGGATTCTTAACAGAACTGCGACTTGCCAGCTTGCTTCTATGG 580 Query 601 GTCCTGCGGCTTCAGGAAAGGGGCATGATCAACCTGGTCCGGTGAAGATTAGTATGGGTT 660 | |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 581 GGCCTGCGGCGTCGGGAAAGGGGCATGATCAGGCTGGTCCGGTGAAGATTAGTATGGGTT 640 Query 661 CGATGGCTAATCATGGACAGCCTCAGCAACAGCAGGTACAAGGTCAACATGTGTTTAACG 720 |||||| |||||| || ||| ||||||||||||||| ||||| |||||| ||||||||| Sbjct 641 CGATGGTTAATCAGGGCCAGTCTCAGCAACAGCAGGCGCAAGGGCAACATATGTTTAACG 700 Query 721 GTGGTGGAATGGCTGCTTCGCCGTTTATGTTAGGGAACCAATACCATCCGCTTTATGGAG 780 |||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||| Sbjct 701 GTGGTGGAATGGCTGCATCGCCGTTTATGTTAGGGAATCAATACCATCCGGTTTATGGAG 760 Query 781 CTGGGATGTTGG-GAAATCCAGCTTTagcagcagcagcagcagcTGGGGGAGGTTACATG 839 | || ||||||| | ||||||||||| ||||||||||||||| |||||||||||| Sbjct 761 CCGGAATGTTGGCG-AATCCAGCTTT------AGCAGCAGCAGCTGGTGGAGGTTACATG 813 Query 840 TATCCGATGTTAGCGGGTGCTCTAGCACATGGCGGGTTGGGTTCTGATATGGTACAGTCT 899 ||||||||||| ||||| |||||||| ||||| ||| ||||||||||| ||||||||||| Sbjct 814 TATCCGATGTTGGCGGGCGCTCTAGCTCATGGTGGGATGGGTTCTGATTTGGTACAGTCT 873 Query 900 AGTCAAATGGGTGGGATTGGTGTTGATCCAAGCGTTGGTGCTGCTGGTCTTTCAGCTCTA 959 |||||||||||||||||| | | ||| ||||||||||||||||||||||| |||| ||| Sbjct 874 AGTCAAATGGGTGGGATT-G-G-TGACCCAAGCGTTGGTGCTGCTGGTCTGTCAGTTCTT 930 Query 960 GGTTCTTACTTTAGAGGTCAGAGTCTGCCTAGTACTTATCCTGATTCGGATGCTGGTGGA 1019 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 931 GGTTCTTACTTTAGAGGTCAGAGTATGCCTAGTGCTTATCCTGATTCGGATGCTGGTGGA 990 Query 1020 AAAAGAGGGACGGGTAAAGATTCGGATGCTGGTGGCTCCTCCTTTCATGGCTACTCAAAC 1079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 991 AAAAGAGGGACGGGTAAAGATTCGGATGCTGGTGGCTCCTCCTTTCATGGCTACTCAAAC 1050 Query 1080 TATTCATG 1087 |||||||| Sbjct 1051 TATTCATG 1058 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56411652845 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5