BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22090.2
Length=1507
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481072 jgi|Araly1|481072|fgenesh2_kg.4__132__AT2G22090.1 1447 0.0
> Ahg481072 jgi|Araly1|481072|fgenesh2_kg.4__132__AT2G22090.1
Length=1272
Score = 1447 bits (783), Expect = 0.0
Identities = 992/1088 (91%), Gaps = 33/1088 (3%)
Strand=Plus/Plus
Query 3 aaatcaaaaatcaaaatccctaaaaGCTTCTTGACTCGTTTATCCTCTACTACAATGGCG 62
|||||||||||||||||||||||||| | | || |||||||| ||||||||||||
Sbjct 1 AAATCAAAAATCAAAATCCCTAAAAG---C-T---TC--TTATCCTCAACTACAATGGCG 51
Query 63 AAAACCCTAGACAAATCTAAGAAGCGCAAACTCGTGAAATCCAAATCCACGAATTTCGAT 122
||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||
Sbjct 52 AAAACCCTAGACAAATCTAAGAAACGCAAACTCGTGAAATCCAAATCCAAGAAACTCGAG 111
Query 123 AAGAAACAGAAGATTaacaaacaacaacaacaacCAGAATCCTCAACGCCATATTCAAGT 182
||||||||||||||| || || ||||||| ||||| || |||||||||||||||
Sbjct 112 AAGAAACAGAAGATT-------AA-AA-AACAACCTGAATCATCGACGCCATATTCAAGT 162
Query 183 TCAAGCTCCAGCTCTGATTCTAGCGATTCCGAATCAGACAACGAATTCGACCCAGAAGAG 242
|||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 163 TCAAGCTCAAGCTCTGATTCTAGCGATTCTGAATCAGACAACGAATTCGATCCAGAAGAG 222
Query 243 CTCCGTGAGCTTCTACAACCTTATTCCAAGGACCAGCTTGTCGATCTAGTTTGTTCCGCT 302
|| ||||||||||||| ||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 223 CTACGTGAGCTTCTACGACCTTATTCCAAGGACCAGCTCGTCGACCTCGTTTGTTCCGCT 282
Query 303 TCTCGAATCGGATCTTCGATCTATTCCGCCGTCGTAGAAGCCGCAGATCGTGATGTTA-C 361
| | ||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 283 GCGCAAATCGGATCCTCGATCTATTCCGCCGTCGTAGAAGCTGCAGATCGTGATGTTATC 342
Query 362 ACACAGGAAAATCTTCGTTTATGGTCTTCCATGGGAGACGACTCGCGAGACTCTTGTTGG 421
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 343 -CATAGGAAAATCTTCGTTTATGGTCTTCCATGGGAGACGACTCGAGAGACTCTTGTT-G 400
Query 422 A-GTCTTTGAAGGTTATGGTGAGATTGAAGAGTGTACCGTTGTTATAGATAAGGCTACTG 480
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 401 ATGTCTTTGAAGGTTATGGAGAGATTGAAGAGTGTACCGTTGTTATAGATAAGGCTACTG 460
Query 481 GTAAGGCTAAAGGGTTTGGATTTGTTATGTTCAAGACTAGGAAAGGAGCTAAAGAAGCTC 540
||||||||||||| || |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 461 GTAAGGCTAAAGGATTCGGATTTGTTATGTTCAAGACGAGGAAAGGAGCTAAAGAAGCGC 520
Query 541 TTAAAGAACCGAAGAAGAGGATTCTTAATAGAACTGCCACTTGCCAGCTTGCTTCTATGG 600
|||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 521 TTAAGGAACCGAAGAAGAGGATTCTTAACAGAACTGCGACTTGCCAGCTTGCTTCTATGG 580
Query 601 GTCCTGCGGCTTCAGGAAAGGGGCATGATCAACCTGGTCCGGTGAAGATTAGTATGGGTT 660
| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 581 GGCCTGCGGCGTCGGGAAAGGGGCATGATCAGGCTGGTCCGGTGAAGATTAGTATGGGTT 640
Query 661 CGATGGCTAATCATGGACAGCCTCAGCAACAGCAGGTACAAGGTCAACATGTGTTTAACG 720
|||||| |||||| || ||| ||||||||||||||| ||||| |||||| |||||||||
Sbjct 641 CGATGGTTAATCAGGGCCAGTCTCAGCAACAGCAGGCGCAAGGGCAACATATGTTTAACG 700
Query 721 GTGGTGGAATGGCTGCTTCGCCGTTTATGTTAGGGAACCAATACCATCCGCTTTATGGAG 780
|||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||
Sbjct 701 GTGGTGGAATGGCTGCATCGCCGTTTATGTTAGGGAATCAATACCATCCGGTTTATGGAG 760
Query 781 CTGGGATGTTGG-GAAATCCAGCTTTagcagcagcagcagcagcTGGGGGAGGTTACATG 839
| || ||||||| | ||||||||||| ||||||||||||||| ||||||||||||
Sbjct 761 CCGGAATGTTGGCG-AATCCAGCTTT------AGCAGCAGCAGCTGGTGGAGGTTACATG 813
Query 840 TATCCGATGTTAGCGGGTGCTCTAGCACATGGCGGGTTGGGTTCTGATATGGTACAGTCT 899
||||||||||| ||||| |||||||| ||||| ||| ||||||||||| |||||||||||
Sbjct 814 TATCCGATGTTGGCGGGCGCTCTAGCTCATGGTGGGATGGGTTCTGATTTGGTACAGTCT 873
Query 900 AGTCAAATGGGTGGGATTGGTGTTGATCCAAGCGTTGGTGCTGCTGGTCTTTCAGCTCTA 959
|||||||||||||||||| | | ||| ||||||||||||||||||||||| |||| |||
Sbjct 874 AGTCAAATGGGTGGGATT-G-G-TGACCCAAGCGTTGGTGCTGCTGGTCTGTCAGTTCTT 930
Query 960 GGTTCTTACTTTAGAGGTCAGAGTCTGCCTAGTACTTATCCTGATTCGGATGCTGGTGGA 1019
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 931 GGTTCTTACTTTAGAGGTCAGAGTATGCCTAGTGCTTATCCTGATTCGGATGCTGGTGGA 990
Query 1020 AAAAGAGGGACGGGTAAAGATTCGGATGCTGGTGGCTCCTCCTTTCATGGCTACTCAAAC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 AAAAGAGGGACGGGTAAAGATTCGGATGCTGGTGGCTCCTCCTTTCATGGCTACTCAAAC 1050
Query 1080 TATTCATG 1087
||||||||
Sbjct 1051 TATTCATG 1058
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56411652845
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5