BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22100.1
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481073 jgi|Araly1|481073|fgenesh2_kg.4__133__AT2G22100.1 1753 0.0
> Ahg481073 jgi|Araly1|481073|fgenesh2_kg.4__133__AT2G22100.1
Length=1321
Score = 1753 bits (949), Expect = 0.0
Identities = 1234/1361 (91%), Gaps = 61/1361 (4%)
Strand=Plus/Plus
Query 4 CACTGCCGTCAACAATGGCgaaagaaggagaagaacgtaagaaggagaagaaagagaaga 63
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 CACTGCCGTCAACAATGGCGAAAGAAAGAGAAGAACGTAAGAAGGAGAAGAAAGAGAAGA 60
Query 64 aggag-ag---ga-agg--agag--gaagcgtcgcgaagctgaagaactcgctgt-aaga 113
||||| || || ||| |||| |||||||||||| |||||||||||||| || |||
Sbjct 61 AGGAGAAGAAAGAGAGGAAAGAGAAGAAGCGTCGCGAGGCTGAAGAACTCGCGGTGAAG- 119
Query 114 gagaagaaAATCTCaaaaaaacataaatcgaaatccaaagagga-agagaaaccagagaa 172
|||||||||||||||||||| |||||||| ||||||||||| || |||||| || |||||
Sbjct 120 GAGAAGAAAATCTCAAAAAAGCATAAATCAAAATCCAAAGA-GACAGAGAAGCCTGAGAA 178
Query 173 atcaaagaagaaatcgaagaaatacgaagaagtagaagaagaggagaaatCTCCATCTCC 232
||| ||||||||||||||| || || | |||||||||||||| || || |
Sbjct 179 ATCCAAGAAGAAATCGAAG-AA-AC-ACGAAGTAGAAGAAGA--AG-AA----GA----G 224
Query 233 ATCTCCATCTCCTAAGAAATCGAAGGAGAGTAAGAAGAAACATAAGAGATCATCAGATGA 292
| ||||||||||||||||||| |||| ||||||||||| |||| | |||||||||
Sbjct 225 A----AATCTCCTAAGAAATCGAAGAAGAGCAAGAAGAAACACAAGA-A--ATCAGATGA 277
Query 293 ATCCGAAGAGATCGTCGATTCAAAGCCTGTTACGGTCCCGATTGTT---AC---CATTGA 346
||||||||||||||| ||||| |||||| ||||||||||||||||| || || |||
Sbjct 278 ATCCGAAGAGATCGTTGATTCGAAGCCTATTACGGTCCCGATTGTTACCACAAACAATGA 337
Query 347 GTCTGATTCTGATTTCGAATTCGATAAGGAAGATATTAAGAATCTACTTGAATCTTACTC 406
||||||||| ||||| |||||||||||||||||| ||||| |||| ||||||||||||||
Sbjct 338 GTCTGATTCAGATTTTGAATTCGATAAGGAAGATGTTAAGCATCTGCTTGAATCTTACTC 397
Query 407 TAAAGAGGAGCTTATTAACCTAATTTACAAAACTGCTGAGAAAGGTTCTAAATTGATCTC 466
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 TAAGGAAGAGCTTATTAACCTAATTTACAAAACTGCTGAGAAAGGTTCTAAATTGATCTC 457
Query 467 AGCAGTGTTTGAATCAGCGGATAGAGATAGTTCTCAACGGAACATATTCGTGCGTGGTCT 526
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 458 TGCTGTGTTTGAATCAGCGGATAGAGATAGTTCTCAGCGGAACATATTCGTGCGTGGTCT 517
Query 527 TGGATGGGATACAACGCATGAGAATCTCAAGGCGGCTTTTGAGGTTTATGGGGAGATA-A 585
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 518 TGGATGGGATACGACGCATGAGAATCTCAAGGCGGCTTTTGAGGTTTTTGGGGAGATAGA 577
Query 586 CGGAATGTTCTGTGGTTATGGATAAAGATACAGGAAGAGCTAAAGGTTTTGGCTTTGTGT 645
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 578 -GGAATGTTCTGTGGTTATGGATAAAGATACAGGAAGAGCTAAAGGGTTTGGCTTTGTGT 636
Query 646 TGTTTAAGACGCGTAAAGGAGCGAGAGCGGCGTTGAAGAATCCGGAGAAGAGAATGTATA 705
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 637 TGTTTAAGACGCGTAAAGGAGCGAGAGCGGCGTTGAGGAATCCGGAGAAGAGAATGTATA 696
Query 706 ATCGAACTGTTAGTTGTTTA-CCAGCTAGGCCGTTTAATTCTGGAAAGCCACGAGAACAA 764
|||||||||| | ||| | | | ||||| ||||| || | |||||||||| ||||
Sbjct 697 ATCGAACTGTGATTTG-TAATCTAGCTAAGCCGTCTACTGCTGGAAAGCCGCGAG----- 750
Query 765 CAACAACCGGTTGAGTCTGTGAAGATTGATTTGAGTCATACGGGTAATCAGAGTGAAATG 824
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 751 -AACAACCGGTTGAGTCTGTGAAGATTGATTTGAGTCATACGGCTAATCAGAGTGAAATG 809
Query 825 GCTTTGCCTGGGATTGATTTGGGTCATGGACTTGATAAGGGACATCAGCAGCAGCAGAAT 884
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 810 GTTTTGCCTGGGATTGATTTGGCTCATGGACTTGATAAGGGACATCAGCAGCAGCAGAAT 869
Query 885 ATGTCAATGTATGCTGGACAGAACATGCCCTTTTATGGACATTCTCAGCCTCCTCCTGGT 944
||| ||||||||| ||||||||||||||||||||| || ||||||||| |||||||||
Sbjct 870 ATGCCAATGTATGGTGGACAGAACATGCCCTTTTACGGGCATTCTCAG---CCTCCTGGT 926
Query 945 TTTAATCCTATGTATGGTGCAATGATGGGTAATCCGATGGTTGCTGGTTTACAGAATTAT 1004
|||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 927 TTTAATCCGATGTATGGTGCAATGATGGGTAATCCCATGGTTGCTGGTTTACCGAATTAT 986
Query 1005 CGTATGTTTGGCTCGGGTATGATGAATCAAGGACCTATGATGCCACCGAATCATATGGGA 1064
|||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct 987 CGTATGTTTGGCTCGGGTATGATGAACCAGGGACCTATGGTGCCACCGAATCATATGGGA 1046
Query 1065 ATGGTGGGACAATATGTTGGTGATGGTAATGTTAACGGTGTTGGTGCGGGTGCTGGTGCT 1124
|||| ||| |||||||||||||||||||||||||| |||| | | |||||| |||||
Sbjct 1047 ATGGCGGGGCAATATGTTGGTGATGGTAATGTTAATGGTG-T--T---GGTGCTAGTGCT 1100
Query 1125 GGTGCTGGTTTTGATGGTGAACGTGCTTGGTATCTGAGATAAGAGAACCCAAGTGGTATG 1184
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1101 GGTACTGGTTTTGATGGTGAACGTGCTTGGTATCTGAGATAAGAGAAACCAAGTGGTATG 1160
Query 1185 ACCATGTTCTCTGATATTTCAAGTTATAGATTAGGCTAATGATTAGTCCGGTATCTTCGA 1244
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 ACCTTGTTCTCTGATATTTCAAGTTATAGATTAGGCTAATGATTAGTCCGGTATCTTCGA 1220
Query 1245 CTCCAACTTGATATTTTGGGAATTGCAGGAGttttttttGCG-G-ATCTTTATTTTCTAT 1302
|| | ||||||||||||||||||||| |||||||||||| || | |||||||||||||||
Sbjct 1221 CTTCGACTTGATATTTTGGGAATTGCCGGAGTTTTTTTTTCGCGTATCTTTATTTTCTAT 1280
Query 1303 GCCTGATGTTTCAAACCTACTTTTTTAGTTTCATTATTTAT 1343
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1281 GCCTGATGTTTCAAACCTACTTTTTTAGTTTCATTATTTAT 1321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50627233776
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5