BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22120.2
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481074 jgi|Araly1|481074|fgenesh2_kg.4__134__AT2G22120.1 1943 0.0
> Ahg481074 jgi|Araly1|481074|fgenesh2_kg.4__134__AT2G22120.1
Length=1406
Score = 1943 bits (1052), Expect = 0.0
Identities = 1128/1164 (97%), Gaps = 8/1164 (1%)
Strand=Plus/Plus
Query 11 CAACATTTCTGGTTTTTGTGTGCCGGCGAAGAACCGGTGAGTGACGGGTCAATTCACATA 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAACATTTCTGGTTTTTGTGTGCCGGCGAAGAACCGGTGAGTGACGGGTCAATTCACATA 60
Query 71 CTTGTTTAACGGCAACAAAAACCTACCGATAAATGCTAAACTAACGAAATCGGATCATAG 130
||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||| ||
Sbjct 61 CTTGTTTAACGGCAACAAACACCTACCGATAAAAGCTTAACTAACGAAATCGGATCAGAG 120
Query 131 CTCGACGAAGTCTCGATCTTTTCTATTCTCTCTTTCTGGGTATTCGTGGGTTTTACCCAG 190
||||||| | ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCGACG-A-TCT---TC---TCTATTCTCTCTTTCTGGGTATTCGTGGGTTTTACCCAG 172
Query 191 ATTTCGAAATTGAATGGCGGACGAACTGGAATTGTCGCCGTTGGTTCCACCGTCGCCGAT 250
||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 173 ATTTCAAAATCGAATGGCGGATGAACTGGAATTGTCGCCGTTGGTTCCACCGTCGCCGAT 232
Query 251 GGTCGAGCCTTCCGAGATCGATCTCGAAGCTGGAGGACCTGGTGAACAAATTCAGTGCCG 310
||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 233 GGTGGAGCCTTCTGAGATCGATCTTGAAGCAGGAGGACCTGGTGAACAAATTCAGTGCCG 292
Query 311 AATCTGCCTTGAAACTGATGGTAGGGATTTCATTGCCCCATGCAAATGCAAAGGAACATC 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 AATCTGCCTTGAAACTGATGGTAGGGATTTCATTGCCCCATGCAAATGCAAAGGAACATC 352
Query 371 AAAGTATGTACATCGTGATTGCTTGGATCATTGGAGAGCTATAAAGGAAGGTTTCGCGTT 430
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 353 AAAGTATGTACATCGTGATTGCTTGGATCATTGGAGAGCTATAAAGGAAGGTTTTGCATT 412
Query 431 TGCGCACTGCACAACTTGCAAGGCTCCATATTATCTGAGAGTTCACAGTGCTGGAGATAG 490
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 413 TGCACACTGCACAACTTGCAAGGCTCCATATTATCTGAGAGTTCATAGTGCTGGAGATAG 472
Query 491 GAAATGGCGGACATTGAAGTTTCGCTTCTTTGTTACTCGAGACATTTTATCCATATTTCT 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 GAAATGGCGGACATTGAAGTTTCGCTTCTTTGTTACTCGAGACATTTTATCCATATTTCT 532
Query 551 TGCTGTTCAGCTTGTGATTGCTGCATTGGCCTACATGGTCTATTTCATAGATAGTTACCA 610
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 533 TGCTGTTCAGCTTGTGATTGCTGCATTGGCCTACATGGTCTATTTCATTGATAGTTATCA 592
Query 611 GCAATCATGGCTTCGTCATATATGGGGTTTTGACAGTGAGGTCACGTTTTATTACATGTG 670
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 593 GCAATCATGGCTTCGTCATATTTGGGGATTTGACAGTGAGGTCACGTTTTATTACATGTG 652
Query 671 TGGAGCTTTATTATTCTTTGCTCTGCTGGGTCTATCTGGATGCGTCATAACCTGCTATGA 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 653 TGGAGCTTTATTATTCTTTGCTCTGCTGGGTCTATCTGGATGCGTCATAACCTGCTACGA 712
Query 731 TCGAAGGGTTCGCAATGACTTAGCACAGCCTTGCCGTGAATTGTGTCTCTGTTGTTGCCA 790
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 713 TCGAAGGGTTCGCAATGACTTAGCACAGCCTTGCCGTGAATTGTGTCTCTGTTGCTGTCA 772
Query 791 GCCTGGGATATGCACAGACTGCCATCTACCAGGAACTATTTGTATGTGGGCAGATTGCAC 850
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 773 GCCTGGGATATGCACAGATTGCCATCTACCAGGAACTATTTGTATGTGGGCAGATTGCAC 832
Query 851 CGCATGTACTGAAGGCTGTGCAAGTGCAGTTAGTGAGTGTGGAGGTTGCCTTGGAGGTGC 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 CGCATGTACTGAAGGCTGTGCAAGTGCAGTTAGTGAGTGTGGAGGTTGCCTTGGAGGTGC 892
Query 911 AGGGGAAGCCGGATTGCCATTACTCTTCATAACGGCATTAGTAATTCTCGGTCTATTTAC 970
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 893 AGGGGAAGCCGGATTGCCATTACTCTTCATAACGGCATTAGTAATTCTCGGTTTATTTAC 952
Query 971 AGTTATCGGTATATTCTATAGCGTATTGGTTGCAACCATGGTTGGACAGCGCATTTGGCA 1030
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 953 AGTTATCGGTATATTCTATAGCGTATTGGTTGCAACTATGGTTGGACAACGCATTTGGCA 1012
Query 1031 GCGCCATTACCACATTCTCGCCAAAAGAATGCTAACAAAGGAGTATGTGGTCGAGGATGT 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 GCGCCATTACCACATTCTCGCCAAAAGAATGCTAACAAAGGAGTATGTGGTCGAGGATGT 1072
Query 1091 AGATGGCGAAATGACGGGGTCAGAATGGTCTCCCCCGGCTTTACCAACTGAGCATGTCCA 1150
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 AGATGGGGAAATGACGGGGTCAGAATGGTCTCCCCCGGCTTTACCAACTGAGCATGTCCA 1132
Query 1151 GCAGCTGAAGACGCTTGGCCTTCT 1174
|||||||||||| |||||||||||
Sbjct 1133 GCAGCTGAAGACACTTGGCCTTCT 1156
Score = 246 bits (133), Expect = 3e-64
Identities = 143/148 (97%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 1181 GAAATCTAATAGATCTTTTGTATTTGTAAAGAAAAGACTCCAACTTATTAAAGAGTCCGT 1240
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1259 GAAATCTAATAGATCTTCTGTATTTGTAAAGAAAAGACTCCAACTTATTAGAGAGTCAGT 1318
Query 1241 GATCTCTCCCATTGAGTCAGAGACCTCTCCAATTCACGAACTGAGCTTGTGTTGAATGTT 1300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GATCTCTCCCACTGAGTCAGAGACCTCTCCAATTCACGAACTGAGCTTGTGTTGAATGTT 1378
Query 1301 TGTTTCTAATATAGGTAAATATCCGAAA 1328
|||||||||||||| |||||||||||||
Sbjct 1379 TGTTTCTAATATAGATAAATATCCGAAA 1406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50055390021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5