BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G22121.1

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg320052 jgi|Araly1|320052|fgenesh1_pm.C_scaffold_4000109           361    1e-99


> Ahg320052 jgi|Araly1|320052|fgenesh1_pm.C_scaffold_4000109
Length=237

 Score =  361 bits (195),  Expect = 1e-99
 Identities = 223/237 (94%), Gaps = 0/237 (0%)
 Strand=Plus/Plus

Query  1    ATGGCCAAGATATCATATTCTTATTTCCTCGTACTCATGCTTGTGGTCTCAGTTTTTTCA  60
            |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct  1    ATGGCCAAGATATCATGTTCTTATTTCCTCGTACTCATACTTGTGGTCTCAGTTTTTTCA  60

Query  61   GTGGTTGAGAAGGCTAAGGGAGATGGAAGTTGTACTATAATCATTGATCCAAAAGCTCCA  120
            || |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct  61   GTAGTTGAGAAGGCTAAGGGAGATGGACGTTGTACTATAACCATTGATCCAAAAGCTCCA  120

Query  121  TCATGTGACATTATTCAATGTCGTCTATCCTGCATTACAGACTACAATGGACTTGCAGAA  180
            ||||||||||||||| ||||||| ||||||||||| || || ||||||||| ||||||||
Sbjct  121  TCATGTGACATTATTGAATGTCGCCTATCCTGCATAACGGAGTACAATGGAGTTGCAGAA  180

Query  181  TGTATTGCATCCAGAATTGGTAGTCCTCCTAATTGTGTATGTACTTATGATTGTTAA  237
            ||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||
Sbjct  181  TGTATTGCATCCAAAATTGGTAGACCTCCTAATTGTGTATGTTCTTATGATTGTTAA  237



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8172287854


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5