BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G22122.1

Length=545
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481075 jgi|Araly1|481075|fgenesh2_kg.4__135__AT2G22122.1          599    7e-171


> Ahg481075 jgi|Araly1|481075|fgenesh2_kg.4__135__AT2G22122.1
Length=515

 Score =  599 bits (324),  Expect = 7e-171
 Identities = 476/544 (88%), Gaps = 31/544 (6%)
 Strand=Plus/Plus

Query  4    CTCATCCTTCACTTCATTATTCCTTTAACCACACATTCTCTTTGTTCATTATAATAATCA  63
            |||||||||||||||||||||| ||||||||||| ||||||||||| || |||| |||||
Sbjct  1    CTCATCCTTCACTTCATTATTCTTTTAACCACACTTTCTCTTTGTTTATAATAACAATCA  60

Query  64   AATTAACTAACATATAATC-GAACTATAATCACAAAATGTCTTCGATGGGAGCAAACTAT  122
            || |||||||||||||| | ||||||||| |||||||||||||| |||||||||||||||
Sbjct  61   AACTAACTAACATATAA-CTGAACTATAAACACAAAATGTCTTCCATGGGAGCAAACTAT  119

Query  123  GCACAACTTCAAGTCATGCagaagaagcagaaggagaagatgatgaaaaagaagttggag  182
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  120  GCACAACTTCAAGTCATGCAGAAGAAGCAGAAGGAGAAAATGATGAAAAAGAAGTTGGAG  179

Query  183  aagagaagagaTGGCGGTGTTGACGGTGAAGAAGGAGGTGGCGTTTCTTCCGCCGGTAAT  242
            ||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||| 
Sbjct  180  AAGAGAAGAGATGGCGGCGTAGACGGTGGAGAAGGAGGTGGCGTTTCTTCCGCCGGTAAC  239

Query  243  AGAGTATTTCCGGTCAAGTCTTCTCCGTTGTCGACTTAAGAAAAAGTAGAAAGACAAGAG  302
            ||| |||||||||||||||||||||| | ||||||||| |||||||| ||||||||||||
Sbjct  240  AGAATATTTCCGGTCAAGTCTTCTCCATCGTCGACTTATGAAAAAGTCGAAAGACAAGAG  299

Query  303  TGAATTATGAAGTGTGAGATATTTTCTTCTATTTTCAGTTGACTTTATGTGTCTCTATGT  362
            |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | |||
Sbjct  300  TGAATTATGAAGTGTGAGATATTT-CTTCTATTTTCAGTTGAATTTATGTGTCT-T-TGT  356

Query  363  CACTATGTGTGATGTGATGCGATGTGATATACAAGTGGTCGTCTTTTGTATCAAGT-TAC  421
                  ||||||||||||| |||||||| | ||||||||||||||||||||  ||| |  
Sbjct  357  ------GTGTGATGTGATGTGATGTGAT-T-CAAGTGGTCGTCTTTTGTATTTAGTCTTT  408

Query  422  GTAATTTGTGTTCtttttttttttttttCAATGTCGATTGTATTaaaaaaaaCTTTGTAT  481
             ||| ||  ||  ||| | ||  |||||   | |   || ||  ||      ||||||||
Sbjct  409  -TAAGTTACGTAATTTGTGTTCCTTTTT---T-T---TT-TA--AA------CTTTGTAT  451

Query  482  ATTTTCGTAGATTTCAATCAACATGTAAGATATATCTCTATTGACAATCTATTTTGAAGT  541
            |||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||| 
Sbjct  452  ATTTTCGTAGATTTCAATTAACATGTAAGATATTTCTGTATTGACAATCTATTTTGAAGA  511

Query  542  TTTT  545
            ||||
Sbjct  512  TTTT  515



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19879061869


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5