BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22140.1
Length=1796
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481078 jgi|Araly1|481078|fgenesh2_kg.4__138__AT2G22140.1 1993 0.0
Ahg481045 jgi|Araly1|481045|fgenesh2_kg.4__105__AT2G21800.1 891 0.0
> Ahg481078 jgi|Araly1|481078|fgenesh2_kg.4__138__AT2G22140.1
Length=1674
Score = 1993 bits (1079), Expect = 0.0
Identities = 1270/1359 (93%), Gaps = 25/1359 (2%)
Strand=Plus/Plus
Query 1 CGTTATCGGCGATTTCGAAATTCGAATCATCATC--ATCTTCCTCGATAGTCCCGCGCT- 57
|||||||||||||| |||| ||| ||||||||| ||||||||||||| |||||||||
Sbjct 1 CGTTATCGGCGATTACGAATTTC--ATCATCATCATATCTTCCTCGATAATCCCGCGCTC 58
Query 58 CAGTCGAAATTCAAAACTCTCTCTTCCATGAACGATCACATTCTCATCTCTGACGGTGAG 117
| | |||||||| ||| ||||||||||||||| ||||||||||| ||||| ||||| ||
Sbjct 59 CTG-CGAAATTC-AAATTCTCTCTTCCATGAAGGATCACATTCTGATCTCCGACGGAGAA 116
Query 118 GATCAGACTACTCCACTTCCATCACTGTCGAAACGGGCTCGAAAATATCCAATCTCTGCG 177
|||||| ||||||||||||||||||||||||| || ||||||||| |||| |||||||||
Sbjct 117 GATCAGGCTACTCCACTTCCATCACTGTCGAAGCGTGCTCGAAAAGATCCCATCTCTGCG 176
Query 178 ATACTGATATCGGATTCAGATCCGACACCGCAGAAGCAACCGCCGGAATCTTCTTTTACT 237
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 177 ATACTGATTTCGGATTCAGATCCGACACCGCAGAAGCAACTGCCGGAATCTTCTTCCACT 236
Query 238 CCTATT-TTCGTCCCTGAGACACCTCTTTCCGATGATTTCTCTGTCGTCAAGTGTTCCTT 296
||| || ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 237 CCT-TTGTTCGTCCCTGATACACCTCTTTCCGATGATTTATCTGTCGTCAAATGTTCCTT 295
Query 297 TGGTTCTAGAGCTTTAGCTTCTAACCGCGAAGACAAATTCTCCGGCAAACGGATAATATC 356
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 296 TGGTTCTGGAGCTTTAGCTTCTAACCGCGAAGACAAATTCTCCGGAAAACGGATAATATC 355
Query 357 TCTGGATTCGGAGTTTGAAGATAGTCCTCGACCTGAAA-CTTCGAAGAAGAATGAATCCG 415
||||||||||||||||||||| |||||||||||| ||| ||||||||||| |||||||||
Sbjct 356 TCTGGATTCGGAGTTTGAAGACAGTCCTCGACCT-AAATCTTCGAAGAAGTATGAATCCG 414
Query 416 TGCTTGCTGGTTTAAGGGAGCCTCGGTTTGGATTGGAAGCCGAAACCAGTGAGGCATACT 475
||||||||||||| |||||||| || |||||||||||||| | |||||||||||||||||
Sbjct 415 TGCTTGCTGGTTTTAGGGAGCCACGTTTTGGATTGGAAGCTGGAACCAGTGAGGCATACT 474
Query 476 ATAAGAATACTAGAATACCTGAGACAAATTTAGACGATGATACTAGTTGGATGCATGAAG 535
||||||||||||||| | |||||||||||||||| ||| |||||| ||||||||||||||
Sbjct 475 ATAAGAATACTAGAAGAACTGAGACAAATTTAGATGATAATACTAATTGGATGCATGAAG 534
Query 536 TCAGTTTTCGCTCTTCGCCA-ACTAATGATACTATTGAGGTTGTTTCTGACCAAGAAAAA 594
| ||||||||||||||| || |||||||||||||| ||||||| ||||||||||||||||
Sbjct 535 TTAGTTTTCGCTCTTCG-CAGACTAATGATACTATCGAGGTTGATTCTGACCAAGAAAAA 593
Query 595 GAGGATATAAGCGTTGAGAAAATTGGTCGAAAAAAGAAGATCAGAACTACAACTCTTCCA 654
||||||||||||||||||||||| ||||||||||| |||||||||||||||| | | |
Sbjct 594 GAGGATATAAGCGTTGAGAAAATGGGTCGAAAAAATAAGATCAGAACTACAA--C-T-C- 648
Query 655 GTTCCAGGTGAGGCATTGCCAAAAAAGCGGCAGTCGAAGGAAGACAAAACAAGTGCAATG 714
||||||||||||||||||||||||||| || |||||||| |||||||||| ||||||||
Sbjct 649 -TTCCAGGTGAGGCATTGCCAAAAAAGCAGCTGTCGAAGGCAGACAAAACATGTGCAATG 707
Query 715 GAGgaaaagaagttaagaaaagagcaagagagattagagaaagcagcctcaaaagcagaa 774
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 708 GAGGAAAAGAAGTTAAGAAAAGAGCAAGAGAGATTAGAGAAAGCAGCCTTAAAAGCAGAA 767
Query 775 gaggctgagcgtaaaagattagagaaggagaagaaaaaatgggaaaagggaaagTTAGCC 834
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 768 GAAGCTGAGCGTAAAAGATTAGAGAAGGAAAAGAAAAAATGGGAAAAGGGAAAGTTAGCC 827
Query 835 CTTAAATCTATTGTTGCCGAGATTGATACTAAAGTGCTTGAAGGATCCATTGGAGGACTT 894
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 828 CTTAAATCTATTGTTGCCGAGATTGATACTAAAGTGGTTGAAGGATCCATTGGAGGACTT 887
Query 895 CTGCTTTCAAGGTTCTCTGAGAAAGGCATTACAATCCACGTAGGCCCTAATCCAATTGAG 954
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 888 CTGCTTTCAAGGTTCTCTGAGAAAGGCATTACAATCCATGTAGGCCCTAATCCAATTGAG 947
Query 955 AGATCCATTGTGTGGACGATGACAATTCCAGAGGA-TATTGCTCCGCTTTTCCCCCAAGG 1013
||||||||||||||||| |||||||||||||| || ||||||||||||||| ||||||||
Sbjct 948 AGATCCATTGTGTGGACAATGACAATTCCAGA-GAGTATTGCTCCGCTTTTTCCCCAAGG 1006
Query 1014 GCCCAAGATTCCTTATTTGCTACTTGTGTATGACGCTGAAGAATTTTGTAATCTTGTTGC 1073
||| |||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1007 GCCGAAGATTCCTTATGTGCTACTTGTATATGAAGCTGAAGAATTTTGTAATCTTGTTGC 1066
Query 1074 TAATGGAAAA-TTTCTAGAAATCATCTCAAGAGTTCAGGACAGATACCCATCTT-ATACG 1131
|||| ||||| |||||||||| ||||||||||||||||||| ||||||||| || |||||
Sbjct 1067 TAAT-GAAAAGTTTCTAGAAAACATCTCAAGAGTTCAGGACCGATACCCAT-TTCATACG 1124
Query 1132 GTGTGCTGCCTCACGAATAAGTTAATGTCCTACGTAAAGAAAAGGGAAAAGGAAGAGTAC 1191
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1125 GTGTGCTGCCTCACCAATAAGTTAATGTCGTACGTAAAGAAAAGGGAAAAGGAAGAGTAC 1184
Query 1192 AAAAATCCGGGAAATTGGAGACGGCCTCCTATCGATGAGGTACTTGCAAAATTAACTACT 1251
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AAAAACCCGGGAAATTGGAGACGGCCTCCTATCGATGAGGTACTTGCAAAATTAACTACT 1244
Query 1252 CACTATGTTAAAGTACATTCCAGACACTGTGTAGACGAGGCTGAGGTGGCTGAACATATT 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1245 CACTATGTTAAAGTACATTCCAGACACTGTGTAGACGAGGCTGAGGTGGCTGAACATGTT 1304
Query 1312 GTTGGCCTAACAAGCAGTCTGGCCTCTTGCCAATTCAGG 1350
|||||||||||||||||||| |||||||||||||| |||
Sbjct 1305 GTTGGCCTAACAAGCAGTCTAGCCTCTTGCCAATTTAGG 1343
Score = 521 bits (282), Expect = 5e-147
Identities = 302/312 (97%), Gaps = 0/312 (0%)
Strand=Plus/Plus
Query 1439 GGTTAAAAGCGTTAGTAGCAATACCAAAGGTACAGCCACGATACGCTTTAGCAGTGTGGA 1498
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1342 GGTTAAAAGCGTTAGTAGCAATACCAAAGGTGCAGCCACGATACGCTTTAGCAGTGTGGA 1401
Query 1499 AGAAATATCCCTCCATGAAGTCTCTTCTTAAGGTTTATATGGATCGTAACAAATCGGTTC 1558
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1402 AGAAATATCCCTCCATGAAGTCTCTTCTTAAGGTTTATCTGGACCGTAACAAATCGGTTC 1461
Query 1559 ATGAGAAGGAGTTTCTACTAAAAGACTTGAAAGTAGAAGGTTTAGTGGGAGGAGACATAA 1618
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1462 ATGAGAAGGAGTTTCTACTAAAAGACTTGAAAGTGGAAGGTTTAGTGGGAGGAGACATAA 1521
Query 1619 GGTTAGGTGAGATTTGTTCAAAGCGGATATACAGAGTTCTCATGTCTCACGATGGAGCCA 1678
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1522 GGTTAGGTGAGATTTGTTCAAAGCGGATATACAGAGTTCTCATGTCTCACAATGGAGCCA 1581
Query 1679 TTAAGACTGATGACGTCGAAAATGGTGCTGCTTTCTTCACCGATTCTCCAGGTGTTAATT 1738
||||||| ||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct 1582 TTAAGACGGATGACGTCGAAAATGGTGCTGCTTTCTTTACAGTTTCTCCAGGTGTTAATT 1641
Query 1739 AGAGTCAAAGAG 1750
|||||| |||||
Sbjct 1642 AGAGTCGAAGAG 1653
> Ahg481045 jgi|Araly1|481045|fgenesh2_kg.4__105__AT2G21800.1
Length=1417
Score = 891 bits (482), Expect = 0.0
Identities = 1004/1247 (81%), Gaps = 71/1247 (6%)
Strand=Plus/Plus
Query 511 GATGATACTAGTTGGATGCA-TGAAGTCAGTTTTCGCTCTTCGCCA--ACTAATGATACT 567
||||||||||| |||||||| || | |||||||| || | ||| |||| || ||
Sbjct 182 GATGATACTAGCTGGATGCAGCGACCT-AGTTTTCGATC-T-ACCATGTCTAAAGAGGCT 238
Query 568 ATTGAGGTTGTTTCTGACCAAGAAAAAGAGGATATAAGCGTTGAGAAAATTG-GTCGAAA 626
|||| ||| | ||||||||| || ||||| |||| ||| |||||| |||||| ||||| |
Sbjct 239 ATTGGGGTAGATTCTGACCATGAGAAAGAAGATACAAGTGTTGAG-AAATTGCGTCGACA 297
Query 627 AAAGAAGATCAGAA---CTACAACT-CTTCCAGTTCCAGGTGAGGCATTGCCAAAAAAGC 682
|||| ||| ||||| ||| || | | | | || | | ||| | |||||| |||||||
Sbjct 298 AAAGCAGAGCAGAAGTTCTAAAAGTACAT-CTCTTTCTGCTGATGAATTGCCTAAAAAGC 356
Query 683 GGCA-GTCGAAGGAAGACAAAACAAGTGC-A--AT-GGAGgaaaagaagttaagaaaaga 737
| | ||| || || | ||| |||| | | | |||||||||||||||||||||||
Sbjct 357 AG-ATGTC-AA--AAAATGAAA-AAGTCCGAGCGTCAGAGGAAAAGAAGTTAAGAAAAGA 411
Query 738 gcaagagagattagagaaagcagcctcaaaagcagaagaggctgagcgt-aaaagattag 796
||||||| |||| | ||||| ||| | ||||| ||||| ||||||| | ||||| || |
Sbjct 412 ACAAGAGAAATTACAAAAAGCCGCCACGAAAGCTGAAGATGCTGAGCATAAAAAG-TTGG 470
Query 797 agaaggagaagaaaaaatggg-aaaaggga-aagTTAGCCCTTAAATCTATTGTTGCCGA 854
||||||| ||| | ||||||| |||| || || ||| |||||||||||||| |||
Sbjct 471 AGAAGGAAAAGCAGAAATGGGCAAAA--GACAA---AGCGCTTAAATCTATTGTCGCCTT 525
Query 855 GATTGATACTAAAGT-GCTTGAAGGATCCATTGGAGGACTTCTGC-TTTCAAGGTTCTC- 911
|||||| | |||| | | |||||| ||| ||||||||| ||| | |||| |||| |
Sbjct 526 GATTGACAATAAATTAG-TTGAAGAATCTGTTGGAGGACGTCT-CATTTCGGGGTT-GCA 582
Query 912 TGAGAAAGGCATTACAAT-CCACGTAGGCC-CTAATCCAATTGAGAGATCCATTGTGTGG 969
|||||||||||||| || || ||| || ||||||||||||| |||||||| ||||||
Sbjct 583 AGAGAAAGGCATTAC-ATACCGTGTA-ACCTCTAATCCAATTGAAAGATCCATCGTGTGG 640
Query 970 ACGATGACAATTCCAGAGGATATTGCTCCG-CTTTTCCCCCAAGGGCCCAAGATTCCTTA 1028
|| |||||| |||||||||||||||||| | | ||| |||| |||| |||||||||| ||
Sbjct 641 ACAATGACACTTCCAGAGGATATTGCTCAGAC-TTTACCCCTAGGGTCCAAGATTCCATA 699
Query 1029 T-TTGCTACTTGTGTATGACGCTGAAGAATTTTGTAATCTTGTTGCTAATGGAA-AATTT 1086
| || ||||| ||||||| |||||||| ||||||||||||||||||||| || || ||
Sbjct 700 TGTT-TTACTTATGTATGAGGCTGAAGACTTTTGTAATCTTGTTGCTAAT-AAAGAACTT 757
Query 1087 CTAGAAATCATCTCAAGAGTTCAG-GACAGATACCCATCTTATACGGTGTGCTGCCTCAC 1145
|| |||| | |||| |||| || | |||| |||||||||||||| | |||||| ||||||
Sbjct 758 CTCGAAAACGTCTCCAGAG-TCCGTGACAAATACCCATCTTATAAGATGTGCTACCTCAC 816
Query 1146 GAATAAGTTAATGTCCTACGTAAAGAAAAGGGAAAAG-GAAGAGTACAAAAATCC-GGGA 1203
|||| |||||||||||||||||| |||| || | || | |||||||| | || | |
Sbjct 817 CAATAGGTTAATGTCCTACGTAAAAAAAAAGG-AGAGTGTTGAGTACAAGGACCCTGTTA 875
Query 1204 A----A----TTGGAGACGGCCTCCTATCGATGAGGTACTTGCAAAATTAACTACTCACT 1255
| | ||||||| ||||||||| ||||||| | ||||| | |||||||||||||
Sbjct 876 ATCGCAGTGGTTGGAGAAAGCCTCCTATTGATGAGGCAATTGCAGAGTTAACTACTCACT 935
Query 1256 ATGTTAAAGTACATTCCAGACACTGTGTAGACGAGGCTGAGGTGGCTGAACATATTGTTG 1315
| | |||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 936 ACACTGGAGTACATTCCAGACACTGTGTAGACGAGGCTGAGGTGGCTGACCATCTTGTTC 995
Query 1316 GCCTAACAAGCAGTCTGGCCTCTTGCCAATTCAGGAAGAAATTAACTATGTTATCAGTAA 1375
| ||||||| | |||||||| ||||||| ||||||| || |||||| ||||||||||
Sbjct 996 GTTTAACAAGTAATCTGGCCTATTGCCAAGTCAGGAATAAGTTAACTCGGTTATCAGTAT 1055
Query 1376 GCGCTAATGGTGCATTAGTCTCCAAGGATTCAGTTGACAAGCATTTGATTAAAAAGAGTC 1435
||||| ||||| ||||| | |||||| || ||| ||| ||||| ||||||| | |||| |
Sbjct 1056 GCGCTGATGGTACATTAATGTCCAAGAATGCAGCTGATAAGCACTTGATTAGAGAGAG-C 1114
Query 1436 C-ATGGTTAAAAGCGTTAGTAGCAATACCAAAGGTACAGCCACGATACGCTTTAGCAGTG 1494
| |||||| |||| ||| |||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1115 CTATGGTTGAAAGTGTTGGTAGCAATACCAAAGGTACAGCCAAGATACGCTGTAGCAGTG 1174
Query 1495 TGGAAGAAATATCCC-TCCATGAAGTCTCTTCTTAAGGTTTATATGGATCGTAACAAATC 1553
| ||||||||| ||| ||| ||||||| |||||||||||||||||||||| ||||| |||
Sbjct 1175 TCGAAGAAATA-CCCATCCTTGAAGTCCCTTCTTAAGGTTTATATGGATCCTAACATATC 1233
Query 1554 GGTTCATGAGAAGGAGTTTCTACTAAAAGACTTGAAAGTAGAAGGTTTAGTGGGAGGAGA 1613
|||||||||||||||||||||||| ||||| |||| ||| ||| |||||| |||| |||
Sbjct 1234 GGTTCATGAGAAGGAGTTTCTACTGAAAGATTTGAGAGTGGAAAATTTAGTAGGAGAAGA 1293
Query 1614 CATAA-GGTTAGGTGA-GATTTGTTCAAAGCGGATATACAGAGTTCTCATGTCTC-ACGA 1670
|| || |||| ||||| | | |||| ||||||||||||||||| || |||||| | ||
Sbjct 1294 CAAAATGGTT-GGTGATGCCT-GTTCGAAGCGGATATACAGAGTGCTTATGTCTTTA-GA 1350
Query 1671 TGGAGCCATTAAGACTGATGACGTCGAAAATGGTGCTGCTTTCTTCA 1717
|||| | |||||||||||||||||||||||||||||||||| |||||
Sbjct 1351 TGGAACAATTAAGACTGATGACGTCGAAAATGGTGCTGCTTCCTTCA 1397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67419733650
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5