BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22145.1
Length=270
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932159 jgi|Araly1|932159|scaffold_400147.1 399 4e-111
Ahg899505 jgi|Araly1|899505|Al_scaffold_0004_155 399 4e-111
Ahg887414 jgi|Araly1|887414|Al_scaffold_0449_1 399 4e-111
> Ahg932159 jgi|Araly1|932159|scaffold_400147.1
Length=311
Score = 399 bits (216), Expect = 4e-111
Identities = 253/271 (93%), Gaps = 2/271 (1%)
Strand=Plus/Plus
Query 1 ATGGTTCTTGCTTTTTTGATAACTTGGTCATGTTCTAGTGCTCAACCGATAGATCCTAAC 60
|||||||||| |||||||||||||||| | ||||| |||||||||||||| |||||||||
Sbjct 21 ATGGTTCTTGTTTTTTTGATAACTTGGCCTTGTTCGAGTGCTCAACCGATCGATCCTAAC 80
Query 61 GCATGTTGGCAGACGATTAAACACCCACCACATGAATGTCTCGAGAGCATAAAGAGG-AT 119
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 81 GCATGTTGGCAGACAATTAAACACCCACCACATGAATGTCTCGAGAGCATAAAG-GGCAT 139
Query 120 TTTCCACGGACATGTCCATGGGATCAAGAAAGAATGTTGCGAAACCGTAAGTACAATTTC 179
| | |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 140 TGTACACGGACATGTCCATGAGATCAAGAAAGAATGTTGCGAAACCGTAAGCACAATTTC 199
Query 180 TGATTTATGTTGGCCAATCATCTTCCCGAGCATGCCTTACATTCGCTTTCTATTGAAGGG 239
|||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 200 TGATTTGTGTTGGCCAATCATCTTCCCAAGCATGCCTTACATTCGTTTTCTATTGAAGGG 259
Query 240 TATTTGCACTGTCAAATACTCATTGCATTGA 270
||| || || |||||||||||||||||||||
Sbjct 260 TATCTGTACAGTCAAATACTCATTGCATTGA 290
> Ahg899505 jgi|Araly1|899505|Al_scaffold_0004_155
Length=270
Score = 399 bits (216), Expect = 4e-111
Identities = 253/271 (93%), Gaps = 2/271 (1%)
Strand=Plus/Plus
Query 1 ATGGTTCTTGCTTTTTTGATAACTTGGTCATGTTCTAGTGCTCAACCGATAGATCCTAAC 60
|||||||||| |||||| ||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 1 ATGGTTCTTGTTTTTTTTATAACTTGGTCTTGTTCGAGTGCTCAACCGATTGATCCTAAC 60
Query 61 GCATGTTGGCAGACGATTAAACACCCACCACATGAATGTCTCGAGAGCATAAAGAGG-AT 119
|||||||||||| |||||||||| |||||||||||||||||||||||||||||| || ||
Sbjct 61 GCATGTTGGCAGGCGATTAAACAGCCACCACATGAATGTCTCGAGAGCATAAAG-GGAAT 119
Query 120 TTTCCACGGACATGTCCATGGGATCAAGAAAGAATGTTGCGAAACCGTAAGTACAATTTC 179
| | |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 120 TGTACACGGACATGTCCATGAGATCAAGAAAGAATGTTGCGAAACCGTAAGTACAGTTTC 179
Query 180 TGATTTATGTTGGCCAATCATCTTCCCGAGCATGCCTTACATTCGCTTTCTATTGAAGGG 239
|||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 180 TGATTTGTGTTGGCCAATCATCTTCCCAAGCATGCCTTACATTCGTTTTCTATTGAAGGG 239
Query 240 TATTTGCACTGTCAAATACTCATTGCATTGA 270
|||||| || |||||||||||||||||||||
Sbjct 240 TATTTGTACAGTCAAATACTCATTGCATTGA 270
> Ahg887414 jgi|Araly1|887414|Al_scaffold_0449_1
Length=270
Score = 399 bits (216), Expect = 4e-111
Identities = 253/271 (93%), Gaps = 2/271 (1%)
Strand=Plus/Plus
Query 1 ATGGTTCTTGCTTTTTTGATAACTTGGTCATGTTCTAGTGCTCAACCGATAGATCCTAAC 60
|||||||||| |||||| ||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 1 ATGGTTCTTGTTTTTTTTATAACTTGGTCTTGTTCGAGTGCTCAACCGATTGATCCTAAC 60
Query 61 GCATGTTGGCAGACGATTAAACACCCACCACATGAATGTCTCGAGAGCATAAAGAGG-AT 119
|||||||||||| |||||||||| |||||||||||||||||||||||||||||| || ||
Sbjct 61 GCATGTTGGCAGGCGATTAAACAGCCACCACATGAATGTCTCGAGAGCATAAAG-GGAAT 119
Query 120 TTTCCACGGACATGTCCATGGGATCAAGAAAGAATGTTGCGAAACCGTAAGTACAATTTC 179
| | |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 120 TGTACACGGACATGTCCATGAGATCAAGAAAGAATGTTGCGAAACCGTAAGTACAGTTTC 179
Query 180 TGATTTATGTTGGCCAATCATCTTCCCGAGCATGCCTTACATTCGCTTTCTATTGAAGGG 239
|||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 180 TGATTTGTGTTGGCCAATCATCTTCCCAAGCATGCCTTACATTCGTTTTCTATTGAAGGG 239
Query 240 TATTTGCACTGTCAAATACTCATTGCATTGA 270
|||||| || |||||||||||||||||||||
Sbjct 240 TATTTGTACAGTCAAATACTCATTGCATTGA 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9432500467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5