BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G22145.1 Length=270 Score E Sequences producing significant alignments: (Bits) Value Ahg932159 jgi|Araly1|932159|scaffold_400147.1 399 4e-111 Ahg899505 jgi|Araly1|899505|Al_scaffold_0004_155 399 4e-111 Ahg887414 jgi|Araly1|887414|Al_scaffold_0449_1 399 4e-111 > Ahg932159 jgi|Araly1|932159|scaffold_400147.1 Length=311 Score = 399 bits (216), Expect = 4e-111 Identities = 253/271 (93%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 1 ATGGTTCTTGCTTTTTTGATAACTTGGTCATGTTCTAGTGCTCAACCGATAGATCCTAAC 60 |||||||||| |||||||||||||||| | ||||| |||||||||||||| ||||||||| Sbjct 21 ATGGTTCTTGTTTTTTTGATAACTTGGCCTTGTTCGAGTGCTCAACCGATCGATCCTAAC 80 Query 61 GCATGTTGGCAGACGATTAAACACCCACCACATGAATGTCTCGAGAGCATAAAGAGG-AT 119 |||||||||||||| ||||||||||||||||||||||||||||||||||||||| || || Sbjct 81 GCATGTTGGCAGACAATTAAACACCCACCACATGAATGTCTCGAGAGCATAAAG-GGCAT 139 Query 120 TTTCCACGGACATGTCCATGGGATCAAGAAAGAATGTTGCGAAACCGTAAGTACAATTTC 179 | | |||||||||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct 140 TGTACACGGACATGTCCATGAGATCAAGAAAGAATGTTGCGAAACCGTAAGCACAATTTC 199 Query 180 TGATTTATGTTGGCCAATCATCTTCCCGAGCATGCCTTACATTCGCTTTCTATTGAAGGG 239 |||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 200 TGATTTGTGTTGGCCAATCATCTTCCCAAGCATGCCTTACATTCGTTTTCTATTGAAGGG 259 Query 240 TATTTGCACTGTCAAATACTCATTGCATTGA 270 ||| || || ||||||||||||||||||||| Sbjct 260 TATCTGTACAGTCAAATACTCATTGCATTGA 290 > Ahg899505 jgi|Araly1|899505|Al_scaffold_0004_155 Length=270 Score = 399 bits (216), Expect = 4e-111 Identities = 253/271 (93%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 1 ATGGTTCTTGCTTTTTTGATAACTTGGTCATGTTCTAGTGCTCAACCGATAGATCCTAAC 60 |||||||||| |||||| ||||||||||| ||||| |||||||||||||| ||||||||| Sbjct 1 ATGGTTCTTGTTTTTTTTATAACTTGGTCTTGTTCGAGTGCTCAACCGATTGATCCTAAC 60 Query 61 GCATGTTGGCAGACGATTAAACACCCACCACATGAATGTCTCGAGAGCATAAAGAGG-AT 119 |||||||||||| |||||||||| |||||||||||||||||||||||||||||| || || Sbjct 61 GCATGTTGGCAGGCGATTAAACAGCCACCACATGAATGTCTCGAGAGCATAAAG-GGAAT 119 Query 120 TTTCCACGGACATGTCCATGGGATCAAGAAAGAATGTTGCGAAACCGTAAGTACAATTTC 179 | | |||||||||||||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 120 TGTACACGGACATGTCCATGAGATCAAGAAAGAATGTTGCGAAACCGTAAGTACAGTTTC 179 Query 180 TGATTTATGTTGGCCAATCATCTTCCCGAGCATGCCTTACATTCGCTTTCTATTGAAGGG 239 |||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 180 TGATTTGTGTTGGCCAATCATCTTCCCAAGCATGCCTTACATTCGTTTTCTATTGAAGGG 239 Query 240 TATTTGCACTGTCAAATACTCATTGCATTGA 270 |||||| || ||||||||||||||||||||| Sbjct 240 TATTTGTACAGTCAAATACTCATTGCATTGA 270 > Ahg887414 jgi|Araly1|887414|Al_scaffold_0449_1 Length=270 Score = 399 bits (216), Expect = 4e-111 Identities = 253/271 (93%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 1 ATGGTTCTTGCTTTTTTGATAACTTGGTCATGTTCTAGTGCTCAACCGATAGATCCTAAC 60 |||||||||| |||||| ||||||||||| ||||| |||||||||||||| ||||||||| Sbjct 1 ATGGTTCTTGTTTTTTTTATAACTTGGTCTTGTTCGAGTGCTCAACCGATTGATCCTAAC 60 Query 61 GCATGTTGGCAGACGATTAAACACCCACCACATGAATGTCTCGAGAGCATAAAGAGG-AT 119 |||||||||||| |||||||||| |||||||||||||||||||||||||||||| || || Sbjct 61 GCATGTTGGCAGGCGATTAAACAGCCACCACATGAATGTCTCGAGAGCATAAAG-GGAAT 119 Query 120 TTTCCACGGACATGTCCATGGGATCAAGAAAGAATGTTGCGAAACCGTAAGTACAATTTC 179 | | |||||||||||||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 120 TGTACACGGACATGTCCATGAGATCAAGAAAGAATGTTGCGAAACCGTAAGTACAGTTTC 179 Query 180 TGATTTATGTTGGCCAATCATCTTCCCGAGCATGCCTTACATTCGCTTTCTATTGAAGGG 239 |||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 180 TGATTTGTGTTGGCCAATCATCTTCCCAAGCATGCCTTACATTCGTTTTCTATTGAAGGG 239 Query 240 TATTTGCACTGTCAAATACTCATTGCATTGA 270 |||||| || ||||||||||||||||||||| Sbjct 240 TATTTGTACAGTCAAATACTCATTGCATTGA 270 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9432500467 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5