BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22150.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320057 jgi|Araly1|320057|fgenesh1_pm.C_scaffold_4000114 401 5e-111
Ahg320059 jgi|Araly1|320059|fgenesh1_pm.C_scaffold_4000116 237 1e-61
> Ahg320057 jgi|Araly1|320057|fgenesh1_pm.C_scaffold_4000114
Length=1167
Score = 401 bits (217), Expect = 5e-111
Identities = 258/278 (93%), Gaps = 1/278 (0%)
Strand=Plus/Plus
Query 399 AAACTGAGGCAAGGAGGTTTCATTTATTCAAACCTGAATACGGAGTGCCGTAATTTCAAC 458
|||||||||| |||||||||||||| |||||||||||||| ||||| || | ||||||||
Sbjct 578 AAACTGAGGCGAGGAGGTTTCATTTGTTCAAACCTGAATATGGAGTTCCATTATTTCAAC 637
Query 459 CCACATCGGTGTTCTCAACGCTGACAACCGGATACATTTTCGATGGAGAACAGTGTGTGT 518
| || |||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 638 CGACGTCGGTGTTCTCAACGCCGACAACCGGATACATTTTCGATGGAGAACAATGTGTGT 697
Query 519 TTGGAATTGACATCTTCGTTGCTCAAACCTTGAATGAATGGGAAGTTTTCTCCTTTGAAG 578
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 698 TTGGAATTGACATCTTCGTTGCTCAAACCTTCAAGGAATGGGAAGTTTTCTCCTTTGAAG 757
Query 579 AAAACATCAAAGATCCCATTTACACATGGAAACTCAACAGATTTTCAACTCTCTATAGTG 638
||||||| ||||| |||||||||||||||||||||| || ||| ||||||||||||||||
Sbjct 758 AAAACAT-AAAGACCCCATTTACACATGGAAACTCACCAAATTCTCAACTCTCTATAGTG 816
Query 639 ACTCTTACACATCCGCCCTTTTTTCTTCTGGAGGAAGT 676
|||||||||||||||||| |||||||| |||||||||
Sbjct 817 ACTCTTACACATCCGCCCCATTTTCTTCCGGAGGAAGT 854
Score = 237 bits (128), Expect = 1e-61
Identities = 153/165 (93%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 1012 AGTGGATGGATGGCCTAATGCAACAGCTAATAATAATGGATGGGGTTTCGAGAAGTTTGT 1071
|||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 990 AGTGGAGGGATGGCCTAATGCAACAACTAATAATAATGGATGGGGTTACGAGAAGTTTGT 1049
Query 1072 ACCATTTGCAGATCTTAAAAATGCATCTAAAGGTTTAGTGGTGGAAGATGCGCTCAAGGT 1131
| || |||| ||||||||| ||||||||||||||||||||||||| |||||| | |||||
Sbjct 1050 ATCACTTGCTGATCTTAAAGATGCATCTAAAGGTTTAGTGGTGGACGATGCGATTAAGGT 1109
Query 1132 TGAAGTCGAGTTCATTGGCTTCTCTAAAACACAGACTCCACCTTA 1176
||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1110 TGAAGTCGAGTTCATTGGCTTCTCTAAAACA--GACTCCACCTTA 1152
Score = 196 bits (106), Expect = 2e-49
Identities = 131/143 (92%), Gaps = 1/143 (1%)
Strand=Plus/Plus
Query 784 GAAGGTATATCCAAATGGAGATGGTTTTGTAAAGGGCAATTCATCGTCAGTCTATTTGTT 843
||| || ||||||||||||||||||| || |||||||||||||| |||| |||||||| |
Sbjct 850 GAA-GTGTATCCAAATGGAGATGGTTATGGAAAGGGCAATTCATTGTCACTCTATTTGCT 908
Query 844 GAGCGAGTCTAATGAAAAGGCTTATGTTCGAGCCAAGCTAAGAGTTCTTGACCAAATCCG 903
||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 909 GAGTGATTCTAATGAAAATGCTTATGTTCGAGCCAAGCTAAGAGTTCTGGACCAAATCCG 968
Query 904 ATCCAACCACGTGGAGAAGCTAG 926
|||||||||||| ||||||||||
Sbjct 969 ATCCAACCACGTCGAGAAGCTAG 991
Score = 189 bits (102), Expect = 4e-47
Identities = 124/135 (92%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 1 ATGGCGCTACTGGATACGTTTCGCTTTACGCAAGAATCGATAACTCAACTCTCATCTCCA 60
|||| || | ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 ATGGTGCGAATGGTTATGTTTCGCTTTACGCAAGAATCGATAACTCAACTCTCATCTCCG 502
Query 61 ATCCAAAGGATGTGTACGCAGAGGTCAAGTTCTTCGTCTACAACAGAATCTACGACAAAT 120
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
Sbjct 503 ATCCAAAGGATGTGTATGCAGAGGTCAAGTTCTTCGTCTACAACAGAGTCTACGACAAGT 562
Query 121 ACTATACCTACCAAG 135
|||| ||||| ||||
Sbjct 563 ACTACACCTATCAAG 577
> Ahg320059 jgi|Araly1|320059|fgenesh1_pm.C_scaffold_4000116
Length=441
Score = 237 bits (128), Expect = 1e-61
Identities = 153/165 (93%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 1012 AGTGGATGGATGGCCTAATGCAACAGCTAATAATAATGGATGGGGTTTCGAGAAGTTTGT 1071
|||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 264 AGTGGAGGGATGGCCTAATGCAACAACTAATAATAATGGATGGGGTTACGAGAAGTTTGT 323
Query 1072 ACCATTTGCAGATCTTAAAAATGCATCTAAAGGTTTAGTGGTGGAAGATGCGCTCAAGGT 1131
| || |||| ||||||||| ||||||||||||||||||||||||| |||||| | |||||
Sbjct 324 ATCACTTGCTGATCTTAAAGATGCATCTAAAGGTTTAGTGGTGGACGATGCGATTAAGGT 383
Query 1132 TGAAGTCGAGTTCATTGGCTTCTCTAAAACACAGACTCCACCTTA 1176
||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 384 TGAAGTCGAGTTCATTGGCTTCTCTAAAACA--GACTCCACCTTA 426
Score = 202 bits (109), Expect = 5e-51
Identities = 131/142 (92%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 785 AAGGTATATCCAAATGGAGATGGTTTTGTAAAGGGCAATTCATCGTCAGTCTATTTGTTG 844
||||| ||||||||||||||||||| || |||||||||||||| |||| |||||||| ||
Sbjct 124 AAGGTGTATCCAAATGGAGATGGTTATGGAAAGGGCAATTCATTGTCACTCTATTTGCTG 183
Query 845 AGCGAGTCTAATGAAAAGGCTTATGTTCGAGCCAAGCTAAGAGTTCTTGACCAAATCCGA 904
|| || ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 184 AGTGATTCTAATGAAAATGCTTATGTTCGAGCCAAGCTAAGAGTTCTGGACCAAATCCGA 243
Query 905 TCCAACCACGTGGAGAAGCTAG 926
||||||||||| ||||||||||
Sbjct 244 TCCAACCACGTCGAGAAGCTAG 265
Score = 191 bits (103), Expect = 1e-47
Identities = 119/127 (94%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 11 TGGATACGTTTCGCTTTACGCAAGAATCGATAACTCAACTCTCATCTCCAATCCAAAGGA 70
||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2 TGGTTATGTTTCGCTTTACGCAAGAATCGATAACTCAACTCTCATCTCCGATCCAAAGGA 61
Query 71 TGTGTACGCAGAGGTCAAGTTCTTCGTCTACAACAGAATCTACGACAAATACTATACCTA 130
|||||| |||||||||||||||||||||||||||||| |||||||||| ||||| |||||
Sbjct 62 TGTGTATGCAGAGGTCAAGTTCTTCGTCTACAACAGAGTCTACGACAAGTACTACACCTA 121
Query 131 CCAAGGT 137
||||||
Sbjct 122 TCAAGGT 128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5