BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G22155.1

Length=306
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932180 jgi|Araly1|932180|scaffold_400168.1                        521    9e-148
  Ahg932176 jgi|Araly1|932176|scaffold_400164.1                        191    3e-48 


> Ahg932180 jgi|Araly1|932180|scaffold_400168.1
Length=349

 Score =  521 bits (282),  Expect = 9e-148
 Identities = 298/306 (97%), Gaps = 0/306 (0%)
 Strand=Plus/Plus

Query  1    ATGGAATCTAAGACGATGAAGATTATAATTTTTCTTATGGTTTTTGTTTTTGCAATGACT  60
            |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  24   ATGGAAACTAAGACGATGAAGATTATATTTTTTCTTATGGTTTTTGTTTTTGCAATGACT  83

Query  61   TGGTCTCCTTCGAGTGCTCAACCAACGGATCCGGAGGGGTGTTTTAAGGCGTTTAAAAGC  120
            |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  84   TGGTTTCCTACGAGTGCTCAACCAACGGATCCGGAGGGGTGTTTTAAGGCGTTTAAAAGC  143

Query  121  ACATCAAGAGGATGTCTCGAAAGCATAAAAGGAATTTTACATGGACATGTCCATGGGATC  180
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct  144  ACATCAAGAGGATGTCTTGAAAGCATAAAAGGAATTTTACATGGACATGTCCATGGGATT  203

Query  181  AAGAAAGAATGTTGTGAAACCGTTAGTATAGTTTCTGATATGTGTTGGCCAATAATTTTC  240
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  204  AAGAAAGAATGTTGTGAAACCGTTAGTATAGTTTCTGATGTGTGTTGGCCAATAATTTTC  263

Query  241  CCAAGCATGCCTTACATTCGTTTTGTATTAAAGGGTATTTGTACTATTAAATACTCTTTG  300
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  264  CCAAGCATGCCTTACATCCGTTTTGTATTAAAGGGTATTTGTACTATTAAATACTCTTTG  323

Query  301  CATTGA  306
            ||||||
Sbjct  324  CATTGA  329


> Ahg932176 jgi|Araly1|932176|scaffold_400164.1
Length=218

 Score =  191 bits (103),  Expect = 3e-48
 Identities = 130/142 (92%), Gaps = 5/142 (4%)
 Strand=Plus/Plus

Query  1    ATGGAATCTAAGACGATGAAGATTATAATTTT-TCTTATGGTTTTTGTTTTTGCAATGAC  59
            |||||||| | ||||||||||||||| ||||| ||||||||||||||||||||   |   
Sbjct  21   ATGGAATCGAGGACGATGAAGATTAT-ATTTTATCTTATGGTTTTTGTTTTTG---TTTT  76

Query  60   TTGGTCTCCTTCGAGTGCTCAACCAACGGATCCGGAGGGGTGTTTTAAGGCGTTTAAAAG  119
            ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  77   TTGGGATCCTTCGAGTGCTCAACCAACGGATCCGGAGGGGTGTTTTAAGGCGTTTAAAAG  136

Query  120  CACATCAAGAGGATGTCTCGAA  141
            ||||||||||||||||||||||
Sbjct  137  CACATCAAGAGGATGTCTCGAA  158



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10759876098


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5