BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G22155.1 Length=306 Score E Sequences producing significant alignments: (Bits) Value Ahg932180 jgi|Araly1|932180|scaffold_400168.1 521 9e-148 Ahg932176 jgi|Araly1|932176|scaffold_400164.1 191 3e-48 > Ahg932180 jgi|Araly1|932180|scaffold_400168.1 Length=349 Score = 521 bits (282), Expect = 9e-148 Identities = 298/306 (97%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 1 ATGGAATCTAAGACGATGAAGATTATAATTTTTCTTATGGTTTTTGTTTTTGCAATGACT 60 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 24 ATGGAAACTAAGACGATGAAGATTATATTTTTTCTTATGGTTTTTGTTTTTGCAATGACT 83 Query 61 TGGTCTCCTTCGAGTGCTCAACCAACGGATCCGGAGGGGTGTTTTAAGGCGTTTAAAAGC 120 |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 84 TGGTTTCCTACGAGTGCTCAACCAACGGATCCGGAGGGGTGTTTTAAGGCGTTTAAAAGC 143 Query 121 ACATCAAGAGGATGTCTCGAAAGCATAAAAGGAATTTTACATGGACATGTCCATGGGATC 180 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 144 ACATCAAGAGGATGTCTTGAAAGCATAAAAGGAATTTTACATGGACATGTCCATGGGATT 203 Query 181 AAGAAAGAATGTTGTGAAACCGTTAGTATAGTTTCTGATATGTGTTGGCCAATAATTTTC 240 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 204 AAGAAAGAATGTTGTGAAACCGTTAGTATAGTTTCTGATGTGTGTTGGCCAATAATTTTC 263 Query 241 CCAAGCATGCCTTACATTCGTTTTGTATTAAAGGGTATTTGTACTATTAAATACTCTTTG 300 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 264 CCAAGCATGCCTTACATCCGTTTTGTATTAAAGGGTATTTGTACTATTAAATACTCTTTG 323 Query 301 CATTGA 306 |||||| Sbjct 324 CATTGA 329 > Ahg932176 jgi|Araly1|932176|scaffold_400164.1 Length=218 Score = 191 bits (103), Expect = 3e-48 Identities = 130/142 (92%), Gaps = 5/142 (4%) Strand=Plus/Plus Query 1 ATGGAATCTAAGACGATGAAGATTATAATTTT-TCTTATGGTTTTTGTTTTTGCAATGAC 59 |||||||| | ||||||||||||||| ||||| |||||||||||||||||||| | Sbjct 21 ATGGAATCGAGGACGATGAAGATTAT-ATTTTATCTTATGGTTTTTGTTTTTG---TTTT 76 Query 60 TTGGTCTCCTTCGAGTGCTCAACCAACGGATCCGGAGGGGTGTTTTAAGGCGTTTAAAAG 119 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 77 TTGGGATCCTTCGAGTGCTCAACCAACGGATCCGGAGGGGTGTTTTAAGGCGTTTAAAAG 136 Query 120 CACATCAAGAGGATGTCTCGAA 141 |||||||||||||||||||||| Sbjct 137 CACATCAAGAGGATGTCTCGAA 158 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10759876098 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5