BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22170.1
Length=788
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932181 jgi|Araly1|932181|scaffold_400169.1 1011 0.0
Ahg490755 jgi|Araly1|490755|fgenesh2_kg.7__188__AT4G39730.1 427 5e-119
> Ahg932181 jgi|Araly1|932181|scaffold_400169.1
Length=593
Score = 1011 bits (547), Expect = 0.0
Identities = 573/586 (98%), Gaps = 0/586 (0%)
Strand=Plus/Plus
Query 60 TACATCCATATCACCGATGATGCCTCGCCGTGACGTCCTCTTCCTCTCACTCCTCCTCGT 119
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 6 TACATCCATATCACCGATGATGCCTCGCCGTGACGTTCTCTTCCTCTCCCTCCTCCTCGT 65
Query 120 CATCGCCACCGTCTCCGCTGTCGCATTAGCCGACGATGAAGCAGATTGTGTCTACACATT 179
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 66 CATCGCCACCGTCTCCGCCGTCGCATTCGCCGACGATGAAGCAGATTGTGTCTACACATT 125
Query 180 CTTCCTTAGAACCGGATCAACCTTCAAAGCCGGTACAGATTCGATCATAAGCGCTAGAGT 239
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 126 CTACCTTAGAACCGGATCAATCTTCAAAGCCGGTACAGATTCGATCATAAGCGCTAGAGT 185
Query 240 CTACGACAAATACGGAGACTACATCGGGATCCGAAACCTAGAAGCATGGGGTGGTTTAAT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 CTACGACAAATACGGAGACTACATCGGGATCCGAAACCTAGAAGCATGGGGTGGTTTAAT 245
Query 300 GGGACCAGGTTACAACTACTACGAGAGGGGTAATCTCGACATTTTCAGTGGGAAAGCACC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 GGGACCAGGTTACAACTACTACGAGAGGGGTAATCTCGACATTTTCAGTGGGAAAGCACC 305
Query 360 ATGTCTTCCGAGCCCAGTCTGTTCATTAAATCTGACCTCTGACGGCTCCGGTGACCACCA 419
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 306 GTGTCTTCCGAGCCCAGTCTGTTCATTGAATCTGACCTCTGACGGCTCCGGTGACCACCA 365
Query 420 CGGTTGGTATGTTAACTACGTGGAAGTCACGACAGCCGGAGTTCATGCAAAGTGCTCGTA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 CGGTTGGTATGTTAACTACGTGGAAGTCACGACAGCCGGAGTTCATGCAAAGTGCTCGTA 425
Query 480 CCAAAGCTTTGATGTTGAGCAATGGCTTGCGTCCGATACATCGCCGTATGAGCTCAGTGC 539
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 426 CCAAAGCTTCGATGTTGAGCAATGGCTTGCCTCCGATACATCGCCGTATGAGCTCAGTAC 485
Query 540 TGTTCGGAATAACTGTCCAGTTTCGCTTAGGGAAAGTGTCGGTCGGGTCGGGTCTGAGAT 599
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 486 TGTTCGGAATAACTGTCCGGTTTCGCTTAGGGAAAGTGTCGGTCGGGTCGGGTCTGAGAT 545
Query 600 CCGGAAGACTCTCTCTTGGATCGTGTGAGAGTAGTGAATGAAATGT 645
|||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 546 CCGGAAGACTCTCTCTTGGATCGTGTGAGATTAGTGAATGAAATGT 591
> Ahg490755 jgi|Araly1|490755|fgenesh2_kg.7__188__AT4G39730.1
Length=656
Score = 427 bits (231), Expect = 5e-119
Identities = 449/553 (81%), Gaps = 19/553 (3%)
Strand=Plus/Plus
Query 79 ATGCCTCGCCGTGACGTCCT-CTTCCTCTCACTCCTCCTCGTCATCGCCACCGTCTCCGC 137
||| ||||||| ||||| | || ||| || |||||||| || ||||||||||||||||
Sbjct 32 ATGGCTCGCCGCGACGTTGTCCTCCCTTTC-CTCCTCCT--TC-TCGCCACCGTCTCCGC 87
Query 138 TGTCGCATTAGCCGACGATGAAGCAGATTGTGTCTACACATTCTTCCTTAGAACCGGATC 197
|| || || ||||| || || |||| ||||| |||||||||| ||| |||||||||||
Sbjct 88 CGTAGCTTTCGCCGAAGACGATCCAGACTGTGTTTACACATTCTACCTAAGAACCGGATC 147
Query 198 AACCTTCAAAGCCGGTACAGATTCGATCATAAGCGCTAGAGTCTACGACAAATACGGAGA 257
| || |||||||| || ||||||||||| ||||| ||||||||||| || ||||| ||
Sbjct 148 GATCTGGAAAGCCGGAACCGATTCGATCATCAGCGCAAGAGTCTACGATAAGTACGGTGA 207
Query 258 CTACATCGGGATCCGAAACCTAGAAGCATGGGGTGGTTTAATGGGACCAGGTTACAACTA 317
||||||||| ||| |||||| |||| |||||||| ||||||||||| | |||||| ||
Sbjct 208 CTACATCGGAATCAAAAACCTTCAAGCTTGGGGTGGATTAATGGGACCTGATTACAATTA 267
Query 318 CTACGAGAGGGGTAATCTCGACATTTTCAGTGGGAA-AGCACCATGTCTT-CCGAGCCC- 374
|| |||||||||||||||||||||||||||||| || |||||| ||| || || || ||
Sbjct 268 CTTCGAGAGGGGTAATCTCGACATTTTCAGTGG-AAGAGCACCGTGT-TTACCTAGTCCG 325
Query 375 AGTCTGTTCATTAAATCTGACCTCTGACGGCTCCGGTGACCACCACGGTTGGTATGTTAA 434
| ||||| | ||||| || |||||||| ||||||||||| ||||| |||||||| | |||
Sbjct 326 A-TCTGTGCCTTAAACCTAACCTCTGATGGCTCCGGTGATCACCATGGTTGGTACGCTAA 384
Query 435 CTACGTGGAAGTCACGACAGCCGGAGTTCATGCAAAGTGCTCGTAC-CAAAGCTTT-GAT 492
||||| || |||||||| || || ||||| ||| |||||||| || || | ||| ||
Sbjct 385 TTACGTTGAGGTCACGACGGCTGGTGTTCACGCACAGTGCTCG-ACGCAG-GATTTTGA- 441
Query 493 G-TTGAGCAATGGCTTGCGTCC-GATACATCGCCGTATGAGCTCAGTGCTGTTCGGAATA 550
| ||||||||||||| || | | ||||| || || |||||||||| || ||||| || |
Sbjct 442 GATTGAGCAATGGCTCGC-TACTGATACTTCTCCTTATGAGCTCACCGCCGTTCGTAACA 500
Query 551 ACTGTCCAGTTTCGCTTAGGGAAAGTGTCGGTCGGGTCGGGTCTGAGATCCGGAAGACTC 610
| ||||| || ||||||||| ||||| ||||||||||||||||||||||||| | |
Sbjct 501 ATTGTCCGGTCAAGCTTAGGGATAGTGTTAGTCGGGTCGGGTCTGAGATCCGGAAAAAGC 560
Query 611 TCTCTTGGATCGT 623
| |||||| ||||
Sbjct 561 TTTCTTGGGTCGT 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29087785671
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5