BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22180.1
Length=1102
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932182 jgi|Araly1|932182|scaffold_400170.1 1419 0.0
> Ahg932182 jgi|Araly1|932182|scaffold_400170.1
Length=911
Score = 1419 bits (768), Expect = 0.0
Identities = 858/899 (95%), Gaps = 15/899 (2%)
Strand=Plus/Plus
Query 207 GTAACTCCCACCTTTCTCCGATGGAGGGGCCACGGCGTCCTCCTTCCGCCACCGCCCCTG 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTAACTCCCACCTTTCTCCGATGGAGGGGCCACGGCGTCCTCCTTCCGCCACCGCCCCTG 60
Query 267 ACTCTGACGATGACAAACCCGATGATCCTCCGTCCGTTTGGCACCGTCCAACCTCTAGCC 326
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 AATCTGACGATGACAAACCCGATGATCCTCCGTCCGTTTGGCACCGTCCAACCTCCAGCC 120
Query 327 TCCCCGCATTGCCATCTTTAGATCCTCCATCGCACGGTTCACACCATTGGCGTAATCATT 386
||||||||||||||||| |||| ||| || || ||||||||||||||||||||||
Sbjct 121 TCCCCGCATTGCCATCTCTAGA---TCC-TC-CA----TCACACCATTGGCGTAATCATT 171
Query 387 CTCTTAATCTGTCTCCACTCCCAACGACATCTTCTCCGCCTCTTCCTCCTCCGGATTCAA 446
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 172 CTCTTAATCTCTCTCCACTCCCAACGACATCTTCTCCGTCTCTTCCTCCTCCGGATTCAA 231
Query 447 TCCCTGAGTTAGAGACGTACGTTGTCCAAGTCCCGAGAGATCAAGTCTATTGGACCCCTC 506
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 232 TCCCTGAGTTAGAGACGTACGTTGTCCAAGTCCCAAGAGATCAAGTCTATTGGACCCCTC 291
Query 507 CTCCGGAACATGCAAAATACGTCGAGAAACGCAGCAAGAACCCGGAGAAAAACAAAAAGA 566
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 292 CTCCGGAACATGCAAAATACGTCGAAAAACGCCGCAAGAACCCGGAGAAAAACAAAAAGA 351
Query 567 AAGGGTGTTCTAAACGTCTTTTGTGGTTCTTCATTATCTTGGTCATTTTCGGATTC-TTA 625
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 352 AAGGGTGTTCTAAACGTCTTTTGTGGTTCTTCATTATCTTGGTCATTTTCGGATTCATT- 410
Query 626 CTCGGTGCAATCATTCTCATCCTCCATTTCGCTTTCAACCCCACTCTTCCTGTTTTCGCG 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 CTCGGTGCAATCATTCTCATCCTCCATTTCGCTTTCAACCCCACTCTTCCTGTTTTCGCG 470
Query 686 GTCGAGAGATTGACCGTAAATCCTAGTAATTTTGAGGTCACATTAAGAGCCGAGAATCCA 745
||||| ||||| |||||||| ||||||||||| |||||||| || ||||| |||||||||
Sbjct 471 GTCGAAAGATTAACCGTAAAACCTAGTAATTTCGAGGTCACGTTGAGAGCTGAGAATCCA 530
Query 746 ACGTCTAACATGGGAGTACGCTACATGATGGAAAAGAACGGGGTCGTTTCCTTAACGTAC 805
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 531 ACGTCTAACATGGGGGTACGCTACATGATGAAAAAGAACGGGGTCGTTTCCTTAACGTAC 590
Query 806 AAGAATAAGAGCCTGGGGA-GCGGGAAATTTCCGGGGTTGTCCCAGGCCGCATCTGGATC 864
|||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 591 AAGAATAAGAGCCT-GGGAGGCGGGACATTTCCGGGGTTGTCCCAGGCCGCATCTGGATC 649
Query 865 CGACAAGGTCAATGTGAAGCTTAATGGGTCGACCAAGAACGCAGTTGTACAACCTCGTGG 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 CGACAAGGTCAATGTGAAGCTTAATGGGTCGACCAAGAACGCAGTTGTACAACCTCGTGG 709
Query 925 ATCGAAGCAACCGGTTG-TTCTGATGCTGAATATGGAGCTGAAGGCTGAGTATGAAGCAG 983
||||||| |||| ||| || |||||||||| ||||||||||| ||||||||||||||||
Sbjct 710 CTCGAAGCTACCG-TTGGTTATGATGCTGAAGATGGAGCTGAATGCTGAGTATGAAGCAG 768
Query 984 GGCCGGTCAAACGGAACAAGGAAGTGGTGGTGACTTGTGATGTTAAGGTTAAGGGACTAT 1043
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 769 GGCCGGTCAAACGGAACAAGGAAGTGGTGGTGACTTGTGATCTGAAGGTTAAGGGACTAT 828
Query 1044 TAGATGCGAAGAAGGTTGAGATTGTGTCGGAGAATTGTGAGAGTGAGTTCAAGAACTGA 1102
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 829 TAGATGCGAAGAAGGTTGAGATTGTGTCGGAGAATTGTGAAAGTGAGTTCAAGAACTGA 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41058381609
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5