BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G22180.1 Length=1102 Score E Sequences producing significant alignments: (Bits) Value Ahg932182 jgi|Araly1|932182|scaffold_400170.1 1419 0.0 > Ahg932182 jgi|Araly1|932182|scaffold_400170.1 Length=911 Score = 1419 bits (768), Expect = 0.0 Identities = 858/899 (95%), Gaps = 15/899 (2%) Strand=Plus/Plus Query 207 GTAACTCCCACCTTTCTCCGATGGAGGGGCCACGGCGTCCTCCTTCCGCCACCGCCCCTG 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTAACTCCCACCTTTCTCCGATGGAGGGGCCACGGCGTCCTCCTTCCGCCACCGCCCCTG 60 Query 267 ACTCTGACGATGACAAACCCGATGATCCTCCGTCCGTTTGGCACCGTCCAACCTCTAGCC 326 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 61 AATCTGACGATGACAAACCCGATGATCCTCCGTCCGTTTGGCACCGTCCAACCTCCAGCC 120 Query 327 TCCCCGCATTGCCATCTTTAGATCCTCCATCGCACGGTTCACACCATTGGCGTAATCATT 386 ||||||||||||||||| |||| ||| || || |||||||||||||||||||||| Sbjct 121 TCCCCGCATTGCCATCTCTAGA---TCC-TC-CA----TCACACCATTGGCGTAATCATT 171 Query 387 CTCTTAATCTGTCTCCACTCCCAACGACATCTTCTCCGCCTCTTCCTCCTCCGGATTCAA 446 |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 172 CTCTTAATCTCTCTCCACTCCCAACGACATCTTCTCCGTCTCTTCCTCCTCCGGATTCAA 231 Query 447 TCCCTGAGTTAGAGACGTACGTTGTCCAAGTCCCGAGAGATCAAGTCTATTGGACCCCTC 506 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 232 TCCCTGAGTTAGAGACGTACGTTGTCCAAGTCCCAAGAGATCAAGTCTATTGGACCCCTC 291 Query 507 CTCCGGAACATGCAAAATACGTCGAGAAACGCAGCAAGAACCCGGAGAAAAACAAAAAGA 566 ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 292 CTCCGGAACATGCAAAATACGTCGAAAAACGCCGCAAGAACCCGGAGAAAAACAAAAAGA 351 Query 567 AAGGGTGTTCTAAACGTCTTTTGTGGTTCTTCATTATCTTGGTCATTTTCGGATTC-TTA 625 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 352 AAGGGTGTTCTAAACGTCTTTTGTGGTTCTTCATTATCTTGGTCATTTTCGGATTCATT- 410 Query 626 CTCGGTGCAATCATTCTCATCCTCCATTTCGCTTTCAACCCCACTCTTCCTGTTTTCGCG 685 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 411 CTCGGTGCAATCATTCTCATCCTCCATTTCGCTTTCAACCCCACTCTTCCTGTTTTCGCG 470 Query 686 GTCGAGAGATTGACCGTAAATCCTAGTAATTTTGAGGTCACATTAAGAGCCGAGAATCCA 745 ||||| ||||| |||||||| ||||||||||| |||||||| || ||||| ||||||||| Sbjct 471 GTCGAAAGATTAACCGTAAAACCTAGTAATTTCGAGGTCACGTTGAGAGCTGAGAATCCA 530 Query 746 ACGTCTAACATGGGAGTACGCTACATGATGGAAAAGAACGGGGTCGTTTCCTTAACGTAC 805 |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 531 ACGTCTAACATGGGGGTACGCTACATGATGAAAAAGAACGGGGTCGTTTCCTTAACGTAC 590 Query 806 AAGAATAAGAGCCTGGGGA-GCGGGAAATTTCCGGGGTTGTCCCAGGCCGCATCTGGATC 864 |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 591 AAGAATAAGAGCCT-GGGAGGCGGGACATTTCCGGGGTTGTCCCAGGCCGCATCTGGATC 649 Query 865 CGACAAGGTCAATGTGAAGCTTAATGGGTCGACCAAGAACGCAGTTGTACAACCTCGTGG 924 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 650 CGACAAGGTCAATGTGAAGCTTAATGGGTCGACCAAGAACGCAGTTGTACAACCTCGTGG 709 Query 925 ATCGAAGCAACCGGTTG-TTCTGATGCTGAATATGGAGCTGAAGGCTGAGTATGAAGCAG 983 ||||||| |||| ||| || |||||||||| ||||||||||| |||||||||||||||| Sbjct 710 CTCGAAGCTACCG-TTGGTTATGATGCTGAAGATGGAGCTGAATGCTGAGTATGAAGCAG 768 Query 984 GGCCGGTCAAACGGAACAAGGAAGTGGTGGTGACTTGTGATGTTAAGGTTAAGGGACTAT 1043 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 769 GGCCGGTCAAACGGAACAAGGAAGTGGTGGTGACTTGTGATCTGAAGGTTAAGGGACTAT 828 Query 1044 TAGATGCGAAGAAGGTTGAGATTGTGTCGGAGAATTGTGAGAGTGAGTTCAAGAACTGA 1102 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 829 TAGATGCGAAGAAGGTTGAGATTGTGTCGGAGAATTGTGAAAGTGAGTTCAAGAACTGA 887 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41058381609 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5