BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22190.1
Length=1259
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481085 jgi|Araly1|481085|fgenesh2_kg.4__145__AT2G22190.1 1906 0.0
Ahg888198 jgi|Araly1|888198|Al_scaffold_0007_184 806 0.0
> Ahg481085 jgi|Araly1|481085|fgenesh2_kg.4__145__AT2G22190.1
Length=1244
Score = 1906 bits (1032), Expect = 0.0
Identities = 1190/1262 (94%), Gaps = 27/1262 (2%)
Strand=Plus/Plus
Query 1 ACATTCACTCTCATTTCCATCAAAATTATAACTTCATTTTACA-TTTTGATTAATATCCT 59
||||||| ||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 1 ACATTCAGTCTCATTTCCATCAAAATTATAACTTCATTTCA-AGTTTTGATTAATATCCT 59
Query 60 AAAATGGTTAGATTCATCGAAGAAAATATTACTAAAATGTTGGAGACAAAGGCCATCTCA 119
||||||||||||||| ||||||| |||| ||||||||||||||||||||||| |||||||
Sbjct 60 AAAATGGTTAGATTCGTCGAAGAGAATACTACTAAAATGTTGGAGACAAAGGTCATCTCA 119
Query 120 AACTCGGAGGTTTTATATGTCGGAGGAGACGACGGAGACACGTCACCAACGACGAAAGTT 179
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 120 AACTCGGAGGTTTTATATGTCGGAAGAGACGACGGAGACACGTCACCATCGACGAAAGTT 179
Query 180 CTTCATGATTTTCAGATCAA---C--A-GCGGAGGAGGACTGATAAGATCATGGGTTGAT 233
|||||||||||||||||||| | | | ||||||||||||||||||||||||||||||
Sbjct 180 CTTCATGATTTTCAGATCAACGGCGGAGGAGGAGGAGGACTGATAAGATCATGGGTTGAT 239
Query 234 TCTATGAGAGCTTGTTCTCCTACTCGCCCTAAATCCTTCAATAGCCAATCTTGTTGGATT 293
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 TCCATGAGAGCTTGTTCTCCTACTCGTCCTAAATCCTTCAATAGCCAATCTTGTTGGATT 299
Query 294 AAGGAACATCCATCTGCTTTGAACATGTTCGAAGAAATACTTCATAAATCTGAAGGAAAA 353
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 300 AAGGAACATCCATCAGCTTTGAACATGTTCGAAGAAATACTTCATAAATCTAAAGGAAAA 359
Query 354 CAAATAGTTATGTTTCTTGATTATGATGGTACTCTCTCTCCCATTGTTGATGATCCTGAT 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CAAATAGTTATGTTTCTTGATTATGATGGTACTCTCTCTCCCATTGTTGATGATCCTGAT 419
Query 414 CGAGCTTTCATGTCCAAGAAGATGCGAAATACTGTGAGGAAACTTGCAAAGTGTTTTCCA 473
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 420 CGAGCTTTCATGTCCAAGAAGATGCGAAATACAGTAAGGAAACTTGCAAAGTGTTTTCCA 479
Query 474 ACAGCCATAGTTAGTGGGAGATGCAGAGAGAAGGTTTCTAGTTTTGTGAAATTAACTGAG 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACAGCCATAGTTAGTGGGAGATGCAGAGAGAAGGTTTCTAGTTTTGTGAAATTAACTGAG 539
Query 534 TTATACTACGCTGGAAGTCATGGCATGGACATCAAAGGACCAGAGCAAGGATCTAAATAC 593
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 CTATACTACGCTGGAAGTCATGGCATGGACATCAAAGGACCAGAGCAAGGACCTAAATAC 599
Query 594 AAGAAAGAAAATCAGTCTCTTCTTTGTCAACCCGCAACTGAATTCCTCCCGGTGATAAAC 653
||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||
Sbjct 600 AAGAAAGAAAATCAGTCTCTTCTTTGTCAACCCGCGACTGAGTTCCTCCCAGTGATCAAC 659
Query 654 GAGGTTTATAAAAAACTAGTCGAGAACACTCAA-TCGATTCCAGGAGCGAAAGTTGAGAA 712
|||||||||||||||||| ||||||| || ||| |||||||||||||| |||||||||||
Sbjct 660 GAGGTTTATAAAAAACTACTCGAGAAAAC-CAAATCGATTCCAGGAGCCAAAGTTGAGAA 718
Query 713 CAACAAATTTTGTGCGTCTGTTCACTTTCGATGCGTAGAAGAAAATAAATGGAGTGACTT 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CAACAAATTTTGTGCGTCTGTTCACTTTCGATGCGTAGAAGAAAATAAATGGAGTGACTT 778
Query 773 GGCCCATCAAGTTCGATCAGTCTTGAAGAATTACCCCAAGCTCATGCTTACCCAAGGAAG 832
| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 779 GACCAATCAAGTTCGATCAGTCTTGAAGAACTACCCCAAGCTCATGCTTACCCAAGGAAG 838
Query 833 AAAAGTATTGGAGATTCGTCCAATCATTAAGTGGGATAAAGGCAAAGCACTCGAGTTTTT 892
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AAAAGTGTTGGAGATTCGTCCAATCATTAAGTGGGATAAAGGCAAAGCACTCGAGTTTTT 898
Query 893 GTTAGAATCACTAGGATATGATAATTGTACCGATGTTTTTCCTATATATATTGGAGATGA 952
|||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 899 GTTAGAATCACTCGGATATAATAATTGTACTGATGTTTTTCCTATATATATTGGAGATGA 958
Query 953 TCGTACCGACGAAGACGCCTTTAAGATACTGAGAGACAAAAAACAAGGTCTTGGAATTCT 1012
||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 959 TCGTACCGACGAAGATGCCTTTAAGATATTGAGAGATAAAAAACAAGGTCTTGGAATTCT 1018
Query 1013 TGTGTCCAAATACGCAAAGGAGACTAATGCTTCTTATTCTTTGCAAGAGCCAGATGAGGT 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TGTGTCCAAATACGCAAAGGAGACTAATGCTTCTTATTCTTTGCAAGAGCCAGATGAGGT 1078
Query 1073 TATGGtttttttAGAACGTTTGGTGGAATGGAAACAGTCAAGGTGTGGGGCATGAAGAGT 1132
||||| ||||||||||||||||||||| |||||||| | ||| |||||||||||||||||
Sbjct 1079 TATGGATTTTTTAGAACGTTTGGTGGACTGGAAACAATTAAGATGTGGGGCATGAAGAGT 1138
Query 1133 TTACAAGTACAGGAGAAACTTGTTCtttttcttttttctttttACTATGTAGTATTGGTA 1192
||||||||||||||||| | |||||| ||||| |||||| ||| | || | |
Sbjct 1139 TTACAAGTACAGGAGAA--T----CTTTTTATTTTT-CTTTTT--TATTT-GT-T----A 1183
Query 1193 AAGATTCTAACGTATAAGAGAACGAGAATAAGTTTATTAA-TATAACAAGAAGACAAATA 1251
| ||||||||||||||||||||||||||| | ||| |||| |||||||| ||||||||||
Sbjct 1184 A-GATTCTAACGTATAAGAGAACGAGAATTATTTTGTTAAATATAACAAAAAGACAAATA 1242
Query 1252 TT 1253
||
Sbjct 1243 TT 1244
> Ahg888198 jgi|Araly1|888198|Al_scaffold_0007_184
Length=1050
Score = 806 bits (436), Expect = 0.0
Identities = 791/959 (82%), Gaps = 37/959 (4%)
Strand=Plus/Plus
Query 173 GAAAGTTCTTCATGATTTTCAG-ATCAACAGCGGAGGAGGACTGAT-AAGATCATGGGTT 230
|||||||||||| ||| || || ||||||| ||||||||| | || || |||||||||
Sbjct 87 GAAAGTTCTTCAAGATCTT-AGTATCAACAATGGAGGAGGATTAATCAA-TTCATGGGTT 144
Query 231 GATTCTATGAGAGCTTGTTCTCCTACTCGCCCTAAATCCTTCAAT--AGCCAATCTTGTT 288
||||| |||||||||||||||||||||| || ||||| ||| | | | || | | ||
Sbjct 145 GATTCAATGAGAGCTTGTTCTCCTACTCACCTTAAAT-CTTTGTTGAAACAAAGC-TCTT 202
Query 289 GGATTA-AGGAACATCCATCTGCTTTGAACATGTTCGAAGAAATACTTCATAAATCTGAA 347
|| | | | ||||||||||| |||||| | ||||| ||||| || ||||| ||||||
Sbjct 203 GGCTCACA-GAACATCCATCAGCTTTGGATATGTTTGAAGAGATTCTTCACCTTTCTGAA 261
Query 348 GGAAAACAAATAGTTATGTTTCTT-GATTATGATGGTACTCTCTCTCCCATTGTTGATGA 406
||||||||||| |||||| ||||| ||||||||||| ||| | |||||||||||||||||
Sbjct 262 GGAAAACAAATCGTTATG-TTCTTGGATTATGATGGCACTTTATCTCCCATTGTTGATGA 320
Query 407 TCCTGATCGAGCTTTCATGTCCAAGAAGATGCGAA-ATACTGTGAGGAAACTTGCAAAGT 465
||| ||||||||||||||||| ||||||||| ||| | |||||||||||||| ||||| |
Sbjct 321 TCCAGATCGAGCTTTCATGTCTAAGAAGATGAGAAGA-ACTGTGAGGAAACTAGCAAACT 379
Query 466 GTTTTCCAACAGCCATAGTTAGTGGGAGATGCAGAGAGAAGGTTTCTAGTTTTGTGAAAT 525
|||| || || |||||||||||||||||||||||||| ||||||| || ||||||||||
Sbjct 380 GTTTCCCGACGGCCATAGTTAGTGGGAGATGCAGAGAAAAGGTTTATAATTTTGTGAAAC 439
Query 526 TAACTGAGTTATACTACGCTGGAAGTCATGGCATGGACATCAAAGGACCAGAGCAAGGAT 585
|||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 440 TAACTGAGTTGTACTATGCTGGAAGTCATGGAATGGACATCAAAGGACCAGAGCAAGGGT 499
Query 586 CTAAA--T-A-CAAG-AA-A---GAAAATCAGTCTCTTCTTTGTCAACCCGCAACTGAAT 636
| ||| | | ||| || | || | | | ||||||||||| ||||| || || || |
Sbjct 500 CCAAATTTGAGGAAGTAAGATTTGATAGTAAATCTCTTCTTTGCCAACCAGCTACAGAGT 559
Query 637 TCCTCCCGGTGATAAACGAGGTTTATAAAAAACTAGTCGAGAAC-ACTCAATCGATTCCA 695
||||||| |||| ||||||||||||||||| |||| ||| || || ||| | |||
Sbjct 560 TCCTCCCCATGATCGACGAGGTTTATAAAAAATTAGTGGAG-ACAACAAAATTTACTCCC 618
Query 696 GGAGCGAAAGTTGAGAACAACAAATTTTGTG-CGTCTGTTCACTTTCGATGCGTAGAAGA 754
||||| |||| |||||||| |||||||||| | || |||||||| ||| | || || ||
Sbjct 619 GGAGCCCAAGTAGAGAACAATAAATTTTGTGTC-TCGGTTCACTTCCGACGTGTCGATGA 677
Query 755 AAATAAATGGAGTGACTTGGCCCATCAAGTTCGATCAGTCTTGAAGAATTACCCCAAGCT 814
|||||| |||||||| ||||| | |||||||||||||| ||||| | ||||| |||||
Sbjct 678 AAATAACTGGAGTGATTTGGCTAACCAAGTTCGATCAGTAATGAAGGACTACCCTAAGCT 737
Query 815 -CATGCTTACCCAAGGAAGAAAAGTATT-GGAGATTCGTCCAATCATTAAGTGGGATAAA 872
| | ||||| |||||||||||||| || | || ||||||| || ||||| |||||||||
Sbjct 738 CCGT-CTTACTCAAGGAAGAAAAGTTTTAGAAG-TTCGTCCTATTATTAAATGGGATAAA 795
Query 873 GGCAAAGCACTCGAGTTTTTGTTAGAATCACTAGGATATGATAATTGTACCGATGTTTTT 932
|||||||||||||||||||| ||||| ||||| ||||| | |||||||||||| || ||
Sbjct 796 GGCAAAGCACTCGAGTTTTTATTAGAGTCACTTGGATACGCTAATTGTACCGACGTGTTC 855
Query 933 CCTATATATATTGGAGATGATCGTACCGACGAAGACGCCTTTAAGATACTGAGAGACAAA 992
||| | ||||| ||||||||||| || |||||||| || ||||||||| ||||||| ||
Sbjct 856 CCTCTTTATATCGGAGATGATCGCACAGACGAAGATGCATTTAAGATATTGAGAGA-AAG 914
Query 993 AA-ACAAGGTCTTGGAATTCTTGTGTCCAAATA-CGCAAAGGAGACTAATGCTTCTTATT 1050
|| |||||||||||| |||||||| || |||| | |||||||||||| || |||||||
Sbjct 915 AAGACAAGGTCTTGGCATTCTTGTATCTAAATTTC-CAAAGGAGACTAGCGCGTCTTATT 973
Query 1051 CTTTGCAAGAGCCAGATGAGGTTATGGtttttttAG-AACGTTTGGTGGAATGGAAACA 1108
| ||||||| || ||||||||||||| || || | ||||||| ||||||||||||||
Sbjct 974 CACTGCAAGAACCCGATGAGGTTATGGAGTTCTT-GCAACGTTTAGTGGAATGGAAACA 1031
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47043679578
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5