BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22200.1
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932184 jgi|Araly1|932184|scaffold_400172.1 826 0.0
> Ahg932184 jgi|Araly1|932184|scaffold_400172.1
Length=994
Score = 826 bits (447), Expect = 0.0
Identities = 689/796 (87%), Gaps = 56/796 (7%)
Strand=Plus/Plus
Query 200 TCTATTTCAATCCTCTCATGGAAACTGCTTCTCTTTCTTTCCCTGTCCCAAACACGAGCT 259
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 4 TCTATTTCAATCCTCTCATGGAAACTGCTTCTCTTCCTTTCCCTGTCCCAAACACGAGCT 63
Query 260 TCGGTGTAAACAAATCTATGCCTCTCGGTCTAAACCAGCTCACACCATACCAAATTCATC 319
||||| ||||| || ||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 64 TCGGTTTAAACCAACCTAAACCTCTTGGTCTAAACCAGCTCACACCATACCAAATTCATC 123
Query 320 AGATTCAGAACCAGCTTAACCATAGACGTAGCACAATCTCAAACCTCTCTCCAAA-CCGT 378
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 124 AGATTCAGAACCAGCTTAACCATAGACGTAGCACAACCTCAAACCTCTCTCCAAAACCA- 182
Query 379 ATCAGAATGAAGAACTTAACACCTTCTACCTCCAAAACCAAGAATCTCTACAGAGGCGTA 438
||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 183 ATCCGAATGAAGAACTTCTCACCTTCTTCCTCCAAAACCAAGAATCTCTACAGAGGCGTA 242
Query 439 AGGCAAAGGCACTGGGGGAAATGGGTCGCTGAGATCCGTTTGCCCAAGAACCGGACCCGT 498
|| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 243 AGACAAAGGCACTGGGGAAAATGGGTCGCTGAGATCCGCTTGCCCAAGAACCGGACCCGT 302
Query 499 CTCTGGCTCGGGACATTCGAAACCGCCGAAAAAGCCGCCTTAGCTTACGACCAAGCTGCT 558
||||||||||| ||||||||||| || ||| |||||||||| ||||||||||||||||||
Sbjct 303 CTCTGGCTCGGAACATTCGAAACTGCTGAAGAAGCCGCCTTGGCTTACGACCAAGCTGCT 362
Query 559 TTTCAGCTCCGTGGAGATATCGCGAAGCTTAACTTCCCAAACCTCATACACGAAGACATG 618
||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||
Sbjct 363 TTTCAGCTCCGTGGAGATATCACGAAGCTCAACTTCCCAAACCTCAGACACGAAGACATT 422
Query 619 AATCCTCTCCCTTCCTCTGTTGATACCAAGCTTCAAGCTATCTGCAAAAGTTTGAGAAAA 678
|||||||||||||||||||| ||| | || ||||||||||| ||||| ||||||||||||
Sbjct 423 AATCCTCTCCCTTCCTCTGTCGATGCAAAACTTCAAGCTATTTGCAAGAGTTTGAGAAAA 482
Query 679 ACAGAGGA-AATTTGCTCTGTTTCTGATCAAACAAAGGAGTACTCTGTTTACTCTGTTTC 737
|||||||| || | ||||||||| | | ||||| | || | | ||| || | |
Sbjct 483 ACAGAGGAGAAGTA-CTCTGTTTCAGGTAAAACA--G-AGCA-T--GTT--CT--GC--C 529
Query 738 AGATAAAACAGAGCTTTTCCTGCCAAAAGCAGAGCTTTTCTTGCCTAAAAGAGAGCATTT 797
| | ||| |||||||||||||||||||| |||||| || ||
Sbjct 530 A-A-AAA-CAGAGCTTTTCCTGCCAAAAACAGAGC-----------AA---------TT- 565
Query 798 GGAGACAAATGAGCTCT-CTAATGAGTCACCGAGAAGCGATGAGACCTCGTTGTTGGATG 856
||||||||| ||| ||| | | ||||||||||| ||||||||||| |||||
Sbjct 566 GGAGACAAAGGAGTTCTTCGA-TGAGTCACCGAAAAGCGATGAGAACTCGT--------- 615
Query 857 AGTCGCAGGCGGAATATTCATCGTCGGATAAAACATTCCTGGATTTCTCGGATACTGAGT 916
||||||||| ||||||||||||||||| |||||| ||||||||||||||| | ||||
Sbjct 616 ---CGCAGGCGGGATATTCATCGTCGGATATAACATTGCTGGATTTCTCGGATTCAGAGT 672
Query 917 TTGAAGAGATTGGAAGTTTCGGGCTTCG-GAAGTTTCCTTCGGTGGAGATTGATTGGGAT 975
||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 673 TTGAAGAGATTGGGAGTTTCGGGCTT-GTGAAGTTTCCTTCGGTGGAGATTGATTGGGAT 731
Query 976 GCAATTAGTAAACTGG 991
|||||||| |||||||
Sbjct 732 GCAATTAGCAAACTGG 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48454227507
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5