BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G22200.1 Length=1296 Score E Sequences producing significant alignments: (Bits) Value Ahg932184 jgi|Araly1|932184|scaffold_400172.1 826 0.0 > Ahg932184 jgi|Araly1|932184|scaffold_400172.1 Length=994 Score = 826 bits (447), Expect = 0.0 Identities = 689/796 (87%), Gaps = 56/796 (7%) Strand=Plus/Plus Query 200 TCTATTTCAATCCTCTCATGGAAACTGCTTCTCTTTCTTTCCCTGTCCCAAACACGAGCT 259 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 4 TCTATTTCAATCCTCTCATGGAAACTGCTTCTCTTCCTTTCCCTGTCCCAAACACGAGCT 63 Query 260 TCGGTGTAAACAAATCTATGCCTCTCGGTCTAAACCAGCTCACACCATACCAAATTCATC 319 ||||| ||||| || ||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 64 TCGGTTTAAACCAACCTAAACCTCTTGGTCTAAACCAGCTCACACCATACCAAATTCATC 123 Query 320 AGATTCAGAACCAGCTTAACCATAGACGTAGCACAATCTCAAACCTCTCTCCAAA-CCGT 378 |||||||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 124 AGATTCAGAACCAGCTTAACCATAGACGTAGCACAACCTCAAACCTCTCTCCAAAACCA- 182 Query 379 ATCAGAATGAAGAACTTAACACCTTCTACCTCCAAAACCAAGAATCTCTACAGAGGCGTA 438 ||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 183 ATCCGAATGAAGAACTTCTCACCTTCTTCCTCCAAAACCAAGAATCTCTACAGAGGCGTA 242 Query 439 AGGCAAAGGCACTGGGGGAAATGGGTCGCTGAGATCCGTTTGCCCAAGAACCGGACCCGT 498 || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 243 AGACAAAGGCACTGGGGAAAATGGGTCGCTGAGATCCGCTTGCCCAAGAACCGGACCCGT 302 Query 499 CTCTGGCTCGGGACATTCGAAACCGCCGAAAAAGCCGCCTTAGCTTACGACCAAGCTGCT 558 ||||||||||| ||||||||||| || ||| |||||||||| |||||||||||||||||| Sbjct 303 CTCTGGCTCGGAACATTCGAAACTGCTGAAGAAGCCGCCTTGGCTTACGACCAAGCTGCT 362 Query 559 TTTCAGCTCCGTGGAGATATCGCGAAGCTTAACTTCCCAAACCTCATACACGAAGACATG 618 ||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||| Sbjct 363 TTTCAGCTCCGTGGAGATATCACGAAGCTCAACTTCCCAAACCTCAGACACGAAGACATT 422 Query 619 AATCCTCTCCCTTCCTCTGTTGATACCAAGCTTCAAGCTATCTGCAAAAGTTTGAGAAAA 678 |||||||||||||||||||| ||| | || ||||||||||| ||||| |||||||||||| Sbjct 423 AATCCTCTCCCTTCCTCTGTCGATGCAAAACTTCAAGCTATTTGCAAGAGTTTGAGAAAA 482 Query 679 ACAGAGGA-AATTTGCTCTGTTTCTGATCAAACAAAGGAGTACTCTGTTTACTCTGTTTC 737 |||||||| || | ||||||||| | | ||||| | || | | ||| || | | Sbjct 483 ACAGAGGAGAAGTA-CTCTGTTTCAGGTAAAACA--G-AGCA-T--GTT--CT--GC--C 529 Query 738 AGATAAAACAGAGCTTTTCCTGCCAAAAGCAGAGCTTTTCTTGCCTAAAAGAGAGCATTT 797 | | ||| |||||||||||||||||||| |||||| || || Sbjct 530 A-A-AAA-CAGAGCTTTTCCTGCCAAAAACAGAGC-----------AA---------TT- 565 Query 798 GGAGACAAATGAGCTCT-CTAATGAGTCACCGAGAAGCGATGAGACCTCGTTGTTGGATG 856 ||||||||| ||| ||| | | ||||||||||| ||||||||||| ||||| Sbjct 566 GGAGACAAAGGAGTTCTTCGA-TGAGTCACCGAAAAGCGATGAGAACTCGT--------- 615 Query 857 AGTCGCAGGCGGAATATTCATCGTCGGATAAAACATTCCTGGATTTCTCGGATACTGAGT 916 ||||||||| ||||||||||||||||| |||||| ||||||||||||||| | |||| Sbjct 616 ---CGCAGGCGGGATATTCATCGTCGGATATAACATTGCTGGATTTCTCGGATTCAGAGT 672 Query 917 TTGAAGAGATTGGAAGTTTCGGGCTTCG-GAAGTTTCCTTCGGTGGAGATTGATTGGGAT 975 ||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 673 TTGAAGAGATTGGGAGTTTCGGGCTT-GTGAAGTTTCCTTCGGTGGAGATTGATTGGGAT 731 Query 976 GCAATTAGTAAACTGG 991 |||||||| ||||||| Sbjct 732 GCAATTAGCAAACTGG 747 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48454227507 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5