BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22230.1
Length=916
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481086 jgi|Araly1|481086|fgenesh2_kg.4__146__AT2G22230.1 1216 0.0
> Ahg481086 jgi|Araly1|481086|fgenesh2_kg.4__146__AT2G22230.1
Length=884
Score = 1216 bits (658), Expect = 0.0
Identities = 772/825 (94%), Gaps = 16/825 (2%)
Strand=Plus/Plus
Query 52 CTCGACAATGGCTACTACTTCTAACTCGGTACTTTTCCTAAGTTCTGACTCACT--G--A 107
||||||||||||||||||||| ||||||||||| |||||||||||||||||||| | |
Sbjct 21 CTCGACAATGGCTACTACTTCCAACTCGGTACTCTTCCTAAGTTCTGACTCACTGAGTCA 80
Query 108 T--tcatcatcatcatcat---ca--A-CCTCTCCATCTATCTTCCTCCAGATCTCACTC 159
| |||||||||||||||| || | ||||| ||||| ||||||||||||||||||||
Sbjct 81 TCATCATCATCATCATCATCAGCAGCAGCCTCTGCATCTCTCTTCCTCCAGATCTCACTC 140
Query 160 TGTTTCTCTCCCACCCAACAAGCGATCCAATTCTCTCACGCTTCGTTGTTCAACAAATGG 219
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 141 TGTTTCTCTCCCACCCAACAAGCGATCCAATTCTCTCACGCTTCGTTGTTCTACAAATGG 200
Query 220 CGATAGCACCTCAACCGAAAAGGAAACACCAATCGAACTCAAATTCCCAGCATTTCCAAC 279
||||| ||||||| | |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 201 CGATAACACCTCATCGGAAAAGGAAACACCAATCGAACTCAAATTCCCTGCATTTCCAAC 260
Query 280 GGTAATGGACATTAACCAAATCAGAGAGATATTGCCTCACAGGTTTCCGTTTCTGCTGGT 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 GGTAATGGACATTAACCAAATCAGAGAGATATTGCCTCACAGGTTTCCGTTTCTGCTGGT 320
Query 340 AGATAGAGTGATAGAGTATACGCCTGGTGTTTCAGCTGTAGCTATTAAGAATGTCACCAT 399
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 321 AGATAGAGTGATAGAGTATACGCCAGGTGTTTCAGCTGTAGCTATTAAGAATGTCACAAT 380
Query 400 CAATGACAATTTCTTCCCTGGCCATTTCCCTGAACGACCAATCATGCCTGGTGTTCTCAT 459
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 381 CAATGACAATTTCTTCCCTGGTCATTTCCCTGAACGACCCATCATGCCTGGTGTTCTCAT 440
Query 460 GATTGAGGCAATGGCGCAAGTCGGAGGTATAGTAATGCTGCAGCCGGAAGTAGGAGGCTC 519
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 441 GATTGAGGCAATGGCGCAAGTGGGAGGTATAGTAATGCTGCAGCCGGAAGTAGGAGGCTC 500
Query 520 TCAAGATAACTTCTTCTTTGCTGGTATTGATAAAGTGAGATTTCGCAAACCAGTGATTGC 579
||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 501 TCAAGATAACTTCTTCTTTGCAGGTATTGACAAAGTGAGATTCCGCAAACCAGTGATTGC 560
Query 580 AGGAGACACGCTAGTCATGAGGATGACTCTTCTCAAGTTCCAGAAGCGGTTCGGGCTCGC 639
|||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 561 AGGAGACACGCTGGTCATGAGAATGACTCTTCTCAAGTTCCAGAAACGGTTCGGGCTTGC 620
Query 640 TAAAATGGAAGGTAAAGCTTATGTGGGTGGTGCTCTGGTGTGTGAAGGCGAGTTCATGAT 699
||| |||||||||||||||||||| ||||| ||| |||| || |||||||||||||||||
Sbjct 621 TAAGATGGAAGGTAAAGCTTATGTTGGTGGCGCTTTGGTATGCGAAGGCGAGTTCATGAT 680
Query 700 GGTTTCTGCTGGTAGTTCTTGATCTCACCCATTAATGGTCTCACTTCCCACATGTGGACT 759
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 681 GGTTTCTGCTGGTAGTTCTTGATCTCACCCATTAATGGTCTCACTTGCCACATGTTGATT 740
Query 760 CTTCTTATGCTTCTTCTGTTATTCGAAAATCTAGACAAGAC-A-GCTTTATGTTTTCGAC 817
|| || |||||| ||||||||||| |||| ||||||||||| | ||||||||||||| ||
Sbjct 741 CTCCTAATGCTTTTTCTGTTATTCTAAAAACTAGACAAGACCAAGCTTTATGTTTTCCAC 800
Query 818 ATTTATATGAGCTACTTTTGCCCTT-CGTGTCTTTATTGCTGTCT 861
||||||||||||| ||||||||||| | |||||||||||||||||
Sbjct 801 ATTTATATGAGCTTCTTTTGCCCTTTC-TGTCTTTATTGCTGTCT 844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33967519047
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5