BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22250.2
Length=1744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320067 jgi|Araly1|320067|fgenesh1_pm.C_scaffold_4000124 2218 0.0
Ahg897358 jgi|Araly1|897358|Al_scaffold_0005_1324 416 3e-115
Ahg915066 jgi|Araly1|915066|Al_scaffold_0009_35 411 1e-113
Ahg894018 jgi|Araly1|894018|Al_scaffold_0006_2014 385 7e-106
> Ahg320067 jgi|Araly1|320067|fgenesh1_pm.C_scaffold_4000124
Length=1437
Score = 2218 bits (1201), Expect = 0.0
Identities = 1365/1442 (95%), Gaps = 19/1442 (1%)
Strand=Plus/Plus
Query 116 ATGGCTTCTCAGAGTTCAGTCGCCGTCATTTCCTCCG---CCGCCGCCAG-AG-GT-GAA 169
||||| ||||||| || | ||||||||||||| ||| |||||||| | || || |||
Sbjct 1 ATGGCGACTCAGAGCTCCGCCGCCGTCATTTCCGCCGCTTCCGCCGCCGGTAGAGTCGAA 60
Query 170 TCATTCCCAGATTCAAAGAAACCAATCGGGTCAGTTCGGTTCCAACAACCCCTCCGTCTC 229
|||||||||||||||||||| ||||||||||||||| |||| | |||||||| ||||||
Sbjct 61 TCATTCCCAGATTCAAAGAACCCAATCGGGTCAGTTAGGTT-C--CAACCCCTTCGTCTC 117
Query 230 TCCTTCTCGTACTGTAAGTCAGGGAATATGTCATCTAGAATCTGCGCTATGGCCAAACCA 289
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 118 TCCCTCTCGTACTGTAAGTCAGGGAATATGTCATCTAGAATCTGTGCTATGGCCAAACCA 177
Query 290 AATGATGCTGAGACTC--T--T--TCATCATCAGTAGATATGTCACTTAGCCCGCGAGTT 343
|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 178 AATGATGCTGAGACTCTGTCATCATCATCATCAGTAGATATGTCACTTAGCCCGCGAGTT 237
Query 344 CAGTCCTTAAAACCTTCCAAGACTATGGTTATAACCGATCTTGCAGCCACTCTTGTTCAA 403
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 238 CAATCCTTAAAACCTTCCAAGACTATGGTTATAACCGATCTTGCAGCTACTCTTGTTCAA 297
Query 404 TCCGGTGTTCCGGTTATTAGACTAGCTGCGGGAGAACCCGATTTCGACACTCCCAAAGTC 463
||||||||||| ||||| ||||||||||| |||||||| || ||||||||||||||||||
Sbjct 298 TCCGGTGTTCCCGTTATCAGACTAGCTGCAGGAGAACCTGACTTCGACACTCCCAAAGTC 357
Query 464 GTAGCTGAGGCTGGGATCAACGCGATTCGAGAAGGTTTTACTAGGTATACGTTAAATGCA 523
||||||||||| ||| |||| ||||||||| ||||||| |||||||||||||||||||||
Sbjct 358 GTAGCTGAGGCCGGGGTCAATGCGATTCGACAAGGTTTCACTAGGTATACGTTAAATGCA 417
Query 524 GGTATTACAGAACTCAGAGAAGCAATATGTCGA-AAGCTAAAAGAGGAGAATGGATTGTC 582
||| ||||||||||||||||||| ||||||| | ||| ||||||||||||| ||||||||
Sbjct 418 GGTCTTACAGAACTCAGAGAAGCGATATGTC-ACAAGTTAAAAGAGGAGAACGGATTGTC 476
Query 583 TTATGCGCCTGATCAGATCTTGGTTAGTAATGGAGCTAAACAAAGTCTCTTACAAGCAGT 642
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TTATGCTCCGGATCAGATCTTGGTTAGTAATGGAGCTAAACAAAGTCTCTTACAAGCAGT 536
Query 643 GCTTGCAGTTTGTTCTCCTGGAGATGAAGTTATAATTCCTGCACCGTATTGGGTGAGTTA 702
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GCTCGCAGTTTGTTCTCCTGGAGATGAAGTTATAATTCCTGCACCGTATTGGGTGAGTTA 596
Query 703 CACAGAACAGGCGAGATTGGCTGATGCAACGCCCGTGGTTATTCCTACCAAGATTTCTAA 762
|||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 597 CACAGAACAGGCGAGATTAGCTGATGCAACACCCGTGGTCATTCCTACCAAGATTTCTAA 656
Query 763 CAATTTTTTGTTGGATCCAAAGGATCTTGAGTCTAAATTGACTGAAAAATCTAGACTTCT 822
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 657 TAATTTCTTGTTGGATCCAAAGGATCTTGAGTCTAAATTGACTGAAAAATCTAGACTT-T 715
Query 823 T-ATTCTCTGCTCTCCTTCCAACCCTACTGGATCTGTTTACCCCAAGAGTTTGCTCGAAG 881
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 716 TAATTCTCTGCTCTCCTTCCAACCCTACTGGATCTGTTTACCCCAAGAGTTTGCTTGAAG 775
Query 882 AGATTGCACGGATCATTGCTAAGCATCCAAGACTTCTGGTGCTTTCGGATGAAATATATG 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 AGATTGCACGGATCATTGCTAAGCATCCAAGACTTCTGGTGCTTTCGGATGAAATATATG 835
Query 942 AACACATTATTTATGCACCTGCAACACACACAAGCTTTGCTTCTTTGCCTGACATGTATG 1001
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 836 AACACATTATTTATGCACCGGCAACACACACAAGTTTTGCTTCTTTGCCTGACATGTATG 895
Query 1002 AAAGAACTTTGACAGTAAACGGTTTCTCAAAGGCTTTCGCAATGACGGGTTGGAGGCTTG 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 AAAGAACTTTGACAGTAAACGGTTTCTCAAAGGCTTTCGCAATGACGGGTTGGAGGCTTG 955
Query 1062 GATATCTTGCTGGTCCTAAACATATTGTGGCAGCTTGCAGTAAATTACAAGGCCAGGTTA 1121
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 956 GATATCTTGCTGGTCCTAAGCATATAGTTGCAGCTTGCAGTAAATTACAAGGCCAGGTTA 1015
Query 1122 GTTCAGGAGCTAGTAGCATTGCTCAGAAAGCAGGTGTTGCTGCGCTTGGGTTAGGCAAAG 1181
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 1016 GTTCAGGAGCTAGTAGCATTGCTCAAAAAGCAGGTGTTGCTGCACTTGGGTTAGGAAAAG 1075
Query 1182 CTGGAGGAGAAACGGTTGCAGAGATGGTTAAAGCTTATAGAGAAAGACGAGATTTCTTGG 1241
||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1076 CTGGAGGAGAAACAGTTGCAGAGATGGTTAAAGCATATAGAGAACGACGAGATTTCTTGG 1135
Query 1242 TTAAAAGCTTAGGTGATATCAAAGGTGTTAAGATCTCTGAACCTCAGGGAGCTTTTTATC 1301
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1136 TTAAAAGCTTAGGTGAAATCGAAGGTGTTAAGATCTCTGAACCTCAGGGAGCTTTTTATC 1195
Query 1302 TCTTTATTGACTTCAGTGCTTACTATGGATCAGAAGCTGAAGGTTTTGGTTTGATCAATG 1361
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TGTTTATTGACTTCAGTGCTTACTATGGATCAGAAGCTGAAGGTTTTGGTTTGATCAATG 1255
Query 1362 ATTCGTCGTCTCTTGCACTATACTTTCTTGACAAGTTTCAGGTTGCAATGGTTCCTGGTG 1421
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 ATTCGTCATCTCTTGCATTATACTTTCTTGACAAGTTTCAGGTTGCAATGGTTCCTGGTG 1315
Query 1422 ATGCTTTTGGAGATGATAGTTGTATCCGAATATCTTATGCCACATCTCTCGACGTTCTTC 1481
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1316 ATGCTTTTGGAGATGATAGTTGTATCCGAATATCTTATGCCACATCTCTCGACGTTCTAC 1375
Query 1482 AAGCAGCTGTTGAGAAGATCAGGAAAGCCCTTGAGCCACTCCGTGCCACTGTCTCCGTTT 1541
|||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1376 AAGCCGCAGTTGAGAAGATCAGAAAAGCCCTTGAGCCACTCCGTGCCACTGTCTCCGTGT 1435
Query 1542 AA 1543
||
Sbjct 1436 AA 1437
> Ahg897358 jgi|Araly1|897358|Al_scaffold_0005_1324
Length=330
Score = 416 bits (225), Expect = 3e-115
Identities = 248/259 (96%), Gaps = 2/259 (1%)
Strand=Plus/Plus
Query 919 GGTGCTTTCGGATGAAATATATGAACACATTATTTATGCACCTGCAACACACACAAGCTT 978
||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 72 GGTGCTTTCGGGTGAAATATGTGAACACATTATTTATGCACCGGCAACACACACAAGCTT 131
Query 979 TGCTTCTTTGCCTGACATGTATGAAAGAACTTTGACAGTAAACGGTTTCTCAAAGGCTTT 1038
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 TGCTTCTTTGCCAGACATGTATGAAAGAACTTTGACAGTAAACGGTTTCTCAAAGGCTTT 191
Query 1039 CGCAATGACGGGTTGGAGGCTTGGATATCTTGCTGGTCCTAAACATATTGTGGCAGCTTG 1098
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 192 TGCAATGACGGGTTGGAGGCTTGGTTATCTTGCTGGTCCTAAACATATTGTGGCAGCTTG 251
Query 1099 CAGTAAATTACAAGGCCAGGTTAGTTCAGGAGCTAGTAGCATTGCTCAGAAAGC--AGGT 1156
||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct 252 CAGTAAATTACAAGGCCAGGTTACTTCAGGAGCTAGTAGCATTGCTCAGAAAGCGCATGT 311
Query 1157 GTTGCTGCGCTTGGGTTAG 1175
|||||||| ||||||||||
Sbjct 312 GTTGCTGCACTTGGGTTAG 330
> Ahg915066 jgi|Araly1|915066|Al_scaffold_0009_35
Length=249
Score = 411 bits (222), Expect = 1e-113
Identities = 238/246 (97%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 869 AGTTTGCTCGAAGAGATTGCACGGATCATTGCTAAGCATCCAAGACTTCTGGTGCTTTCG 928
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 AGTTTGCTTGAAGAGATTGCACGGATCATTGCTAAGCATCCAAGACTTCTAGTGCTTTCG 60
Query 929 GATGAAATATATGAACACATTATTTATGCACCTGCAACACACACAAGCTTTGCTTCTTTG 988
| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 GGTGAAATATGTGAACACATTATTTATGCACCGGCAACACACACAAGCTTTGCTTCTTTG 120
Query 989 CCTGACATGTATGAAAGAACTTTGACAGTAAACGGTTTCTCAAAGGCTTTCGCAATGACG 1048
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 CCAGACATGTATGAAAGAACTTTGACAATAAACGGTTTCTCAAAGGCTTTCGCAATGACG 180
Query 1049 GGTTGGAGGCTTGGATATCTTGCTGGTCCTAAACATATTGTGGCAGCTTGCAGTAAATTA 1108
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGTTGGAGGCTTGGTTATCTTGCTGGTCCTAAACATATTGTGGCAGCTTGCAGTAAATTA 240
Query 1109 CAAGGC 1114
||||||
Sbjct 241 CAAGGC 246
> Ahg894018 jgi|Araly1|894018|Al_scaffold_0006_2014
Length=234
Score = 385 bits (208), Expect = 7e-106
Identities = 224/232 (97%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 1312 CTTCAGTGCTTACTATGGATCAGAAGCTGAAGGTTTTGGTTTGATCAATGATTCGTCGTC 1371
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3 CTTCAGTGCTTACTATGGATCAAAAGCTGAAGGTTTTGGTTTGATCAATGATTCGTCGTC 62
Query 1372 TCTTGCACTATACTTTCTTGACAAGTTTCAGGTTGCAATGGTTCCTGGTGATGCTTTTGG 1431
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 TCTTGCATTATACTTTCTTGACAAGTTTCAGGTTGCAATGGTTCCTGGTGATGCTTTTGG 122
Query 1432 AGATGATAGTTGTATCCGAATATCTTATGCCACATCTCTCGACGTTCTTCAAGCAGCTGT 1491
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 123 AGATGATAGTTGTATCCGAATATCTTATGCCACATCTCTCGACGTTCTACAAGCCGCAGT 182
Query 1492 TGAGAAGATCAGGAAAGCCCTTGAGCCACTCCGTGCCACTGTCTCCGTTTAA 1543
||||||||||||||||| |||||||||||| ||||||||||||||||| |||
Sbjct 183 TGAGAAGATCAGGAAAGTCCTTGAGCCACTTCGTGCCACTGTCTCCGTGTAA 234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65439040910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5