BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22260.1
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932189 jgi|Araly1|932189|scaffold_400177.1 1358 0.0
Ahg481091 jgi|Araly1|481091|fgenesh2_kg.4__151__AT2G22270.1 132 7e-30
> Ahg932189 jgi|Araly1|932189|scaffold_400177.1
Length=964
Score = 1358 bits (735), Expect = 0.0
Identities = 883/953 (93%), Gaps = 15/953 (2%)
Strand=Plus/Plus
Query 78 AATTCCACCGCCGCTAATCGCTCTAACCAGCCGTCTTCTGATGGAATCAGCGACGGTCAA 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 24 AATTCCACCGCCGCTAATCGCTCTAACCAGCCGTCTTCTGATGGAATCAGCGACGGTCAA 83
Query 138 ATCACCAATGAGGAAGCTGAATCAC-TAATTAACAAGAAGAACTGTTCAGGGCACAAGCT 196
||||||||||| ||||||||||| | | | ||| ||||| |||||||| ||| || ||||
Sbjct 84 ATCACCAATGACGAAGCTGAATCGCTTCA-TAAGAAGAACAACTGTTCTGGGTACGAGCT 142
Query 197 AAAAGAAGTAACTGATAGTGACACATTCTCTGACAATGGTAAAGATGATTCAGATACCAA 256
|| ||||||||||| ||||||||||||||||||||| | | | |||| || |||
Sbjct 143 AAGAGAAGTAACTGGTAGTGACACATTCTCTGACAA---T---G--G-TTCACTTAACAA 193
Query 257 GAAAAGATTCCATTACCATCAGGATCAGCGGAGGATGAGTTTGACATCGATTGTGGCGGT 316
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 GAAAAGACTCCATTATCATCAGGATCAGCGGAGGATGAGTTTGACATCGATTGTGGCGGT 253
Query 317 GGAGTCTCCTTCATCGAGCAACGCTCCCTCTAGAAAAACCATTGATCTTGGCCATGGAAG 376
|||| |||||||||| | | |||||||| |||||| ||||||||||||||||||||||||
Sbjct 254 GGAGACTCCTTCATCTACCGACGCTCCCACTAGAAGAACCATTGATCTTGGCCATGGAAG 313
Query 377 CGACCTCATTTACATTCAGAGGTTTCTTCCATTTCAACAATCTTGGACTTTCTTCGATTA 436
||||||||| |||||||||||||||||||| ||||||||||||||| ||||||| |||||
Sbjct 314 CGACCTCATCTACATTCAGAGGTTTCTTCCCTTTCAACAATCTTGGTCTTTCTTTGATTA 373
Query 437 TCTCGACAAGCATATTCCTTGGACCAGGCCTACTATTCGTGTCTTTGGTCGATCTTGCCT 496
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 374 TCTCGACAAGCATATTCCTTGGACCAGGCCTACTATTCGTGTCTTCGGTCGATCTTGCCT 433
Query 497 CCAGCCGAGAGATACTTGTTATGTTGCAAGTAGCGGATTGACTGCGTTGGTGTACAGTGG 556
|||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||
Sbjct 434 TCAGCCGAGAGATACTTGTTATGTTGCGAGTAGCGGATTGACTTCACTGGTGTACAGTGG 493
Query 557 ATATCGACCTACCTCCT-ATTCGTGGGATGATTTCCCACCTCTCAAGGAGATTCTGGATG 615
||||||||||| | || |||||||||||||||| |||||||||||||||||||||||||
Sbjct 494 ATATCGACCTAA-TGCTTATTCGTGGGATGATTTTCCACCTCTCAAGGAGATTCTGGATG 552
Query 616 CTATTTACAAGGTGCTTCCTGGAAGCAGATTCAACAGCTTGCTCTTAAATAGATACAAAG 675
|||||||||| | |||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 553 CTATTTACAAAGCGCTTCCTGGAAGCAGATTCAACAGCTTGCTGTTAAATAGGTACAAAG 612
Query 676 GTGCCAGTGATTATGTGGCTTGGCATGCAGATGATGAAAAGATTTATGGTCCAACTCCAG 735
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 613 GTGCCAGTGACTATGTGGCTTGGCATGCAGATGATGAAAAGATTTATGGTCCAACTCCCG 672
Query 736 AAATTGCTTCAGTCTCGTTTGGATGTGAACGTGATTTTGTGTTGAAGAAAAAGAAAGATG 795
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 673 AAATTGCTTCAGTCTCGTTTGGATGCGAACGTGATTTTGTGTTGAAGAAAAAGAAACATG 732
Query 796 AAGAATCTTCCCAAGGGAAAACAGGAGACAGTGGACCAGCTAAGAAGAGGTTAAAGAGAA 855
||||||||||||||| ||||||||| ||| |||||||||| || ||||||||||||||||
Sbjct 733 AAGAATCTTCCCAAGAGAAAACAGGGGACGGTGGACCAGCGAAAAAGAGGTTAAAGAGAA 792
Query 856 GCAGCAGAGAGGATCAACAAAGTTTGACATTGAAACATGGATCGTTGCTGGTGATGAGAG 915
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 793 GCAGCAGAGAGGATCAACAAAGTTTGACATTGAAGCATGGATCGTTGCTGGTGATGAGAG 852
Query 916 GATACACTCAAAGAGACTGGATTCATTCTGTGCCAAAGCGTGCAAAGGCAGAGGGCACTC 975
||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 853 GATACACTCAAAGGGACTGGATTCATTCTGTGCCAAAGCGGGCAAAGGCAGAAGGCACTC 912
Query 976 GTATCAACCTCACATTCAGGCTTGTTTTGTAAATTGAGCATCATATG-CAAGA 1027
||||||||||||| ||||||| ||||||||||| |||| |||||| | |||||
Sbjct 913 GTATCAACCTCACCTTCAGGCGTGTTTTGTAAACTGAGAATCATA-GACAAGA 964
> Ahg481091 jgi|Araly1|481091|fgenesh2_kg.4__151__AT2G22270.1
Length=1114
Score = 132 bits (71), Expect = 7e-30
Identities = 100/114 (88%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 173 GAAGAACTGTTCAGGGCACAAGCTAAAAGAAGTAACTGATAGTGACACATTCTCTGACAA 232
|||||| ||||| ||||| |||||||||||| | |||| |||||||| ||||||||| ||
Sbjct 249 GAAGAATTGTTCTGGGCATAAGCTAAAAGAAATGACTGGTAGTGACATATTCTCTGATAA 308
Query 233 TGGTAAAGATGATTCAGAT-ACCAAGAAAAGATTCCATTACCATCAGGATCAGC 285
||||||||||||| || || |||| || |||| |||||||||||||||||||||
Sbjct 309 TGGTAAAGATGATCCAAATCACCA-GACAAGAATCCATTACCATCAGGATCAGC 361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42735789957
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5