BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G22270.1 Length=1243 Score E Sequences producing significant alignments: (Bits) Value Ahg481091 jgi|Araly1|481091|fgenesh2_kg.4__151__AT2G22270.1 1411 0.0 Ahg932189 jgi|Araly1|932189|scaffold_400177.1 65.8 7e-10 > Ahg481091 jgi|Araly1|481091|fgenesh2_kg.4__151__AT2G22270.1 Length=1114 Score = 1411 bits (764), Expect = 0.0 Identities = 908/976 (93%), Gaps = 15/976 (2%) Strand=Plus/Plus Query 91 ATCCGCATCATTCCACCGCCGATCTTCTTTCTTGGTCTGAGATCCGCCGTCCTGACTATT 150 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 74 ATCCGCATCATTCCACCGCCGATCTTCTTTCTTGGTCTGAGATCCGTCGTCCTGACTATT 133 Query 151 CCACCGCCGCTAATCGCTCTAACCAGCCGTCTGATGGAATGAACGATGTACTTGGCGGCG 210 |||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||| Sbjct 134 CCACCGCCGCTAATCGCTCTAACCAGCCGTCTGATGGAATGAGCGAGGTGCTTGGCGGCG 193 Query 211 GCGGTCAGATCACTAACGCGGAAACTAAATCACTTAATACGAATGTTTCGCATAGGAAGA 270 ||||||||||||||||||||||| | |||| ||||||| ||||||||| ||||||||| Sbjct 194 GCGGTCAGATCACTAACGCGGAATCCGAATCGCTTAATAAGAATGTTTCTTATAGGAAGA 253 Query 271 ACTGTTCTGGGCATAAGCTAAAAGAAATGACTGGTAGTGACATATTCTCTGATGATGGTA 330 | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 254 ATTGTTCTGGGCATAAGCTAAAAGAAATGACTGGTAGTGACATATTCTCTGATAATGGTA 313 Query 331 AATATGATCCAAATCACCAGACAAGAATCCATTACCATCAGGATCAGCTGAGCCAGATAT 390 || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 314 AAGATGATCCAAATCACCAGACAAGAATCCATTACCATCAGGATCAGCTAAGCCAGATAT 373 Query 391 CATTCAGCGGCGAAGAGAATG-CA--ACAA-C-TCCCATGAATGGCAAAGATGATCCAAA 445 ||||||||||||||||||||| || | || | | || ||||| |||||||||||||| Sbjct 374 CATTCAGCGGCGAAGAGAATGCCATGA-AACCAAACGAT-AATGGTAAAGATGATCCAAA 431 Query 446 TCACCAGACAAGAATCCATTACCATCAAGATCAGAGAAGCCAGATATCTTTCAGCGGTGA 505 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 432 TCACCAGACAAGAATCCATTACCATCAAGATCAGCGAAGCCAGATATCTTTCAGCGGCGA 491 Query 506 AGAGAATGTGACTCCAAAGAAACCAACCACTTTAAACGAGGCTGCTAAGCAAAAGGAGTT 565 ||||||||||||||| |||||||||||||||| ||||||||| || |||||||||||||| Sbjct 492 AGAGAATGTGACTCCGAAGAAACCAACCACTTCAAACGAGGCGGCAAAGCAAAAGGAGTT 551 Query 566 GAGCAGGACTGTAGAAACCCAAGCAGATTCGAAGTGTAAGAAGAAACAGATATCGAACAC 625 |||||||||| |||||||||||||||||| ||| |||||||||||||| || |||||| Sbjct 552 GAGCAGGACTATAGAAACCCAAGCAGATTTAAAGAGTAAGAAGAAACAGGCATTGAACAC 611 Query 626 CAAGAATAAAGCAATGAGTGGGCATGACATCTTTGCATCTCCTGAAAGCCAACCTCGCCG 685 ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 612 CAAGACCAAAGCAATGAGTGGTCATGACATCTTCGCATCTCCTGAAAGCCAACCTCGCCG 671 Query 686 CTTGTTTGGTGGTGCAACACAATC-AGAAGTTAAAGGAAATAAGAACACGGAGGAATCTG 744 |||| || |||||||||||| | ||||||| |||||||||||||||||| |||||||| Sbjct 672 CTTG-TT--CGGTGCAACACAA-CAAGAAGTTGAAGGAAATAAGAACACGGGGGAATCTG 727 Query 745 CACCGAGGAGCTCGCGTGCATCTGTCAAAACCTCAAACGGGC-AA--AGCAGCAACAGAT 801 ||||||| ||||||||||||||||| ||| ||| ||||||| || |||||||||||| Sbjct 728 CACCGAGAAGCTCGCGTGCATCTGTTAAAGCCTTTAACGGGCAAAGCAGCAGCAACAGAC 787 Query 802 TGTTTAGTGAAGAACATGTTGTGAAGTCATCAAAGAAGATACATAACCAGAAGTCTCAGT 861 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 788 TGTTTAGTGAAGAACATGTTGTGAAGTCATCAAAGAAGATACATAACCAGAAGTCTCAGT 847 Query 862 TTCAGGGGCTCACAAGCAATGGTATCTTCAAATCTGATAAAATCCCTCCTGGTTATTCAG 921 |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 848 CTCAGGGACTCACAAGCAATGGTATCTTCAAATCTGATAAAATCCCTCCTGGCTATTCTG 907 Query 922 AGAAGATGCAAAGCTCAGCCAAAAAGCGGGAAATGAGCGGACACAATATATTTGCAGACG 981 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 908 AGAAGATGCAAAGCTCAGCTAAAAAGCGGGAAATGAGCGGACACAATATATTTGCAGACG 967 Query 982 GGAAGTCGGAATATCGGGATTACTATGGTGGTGCGAGGAGACCTCCTGGTGGCGAGAGCA 1041 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 968 GGAAATCGGAATATCGGGATTACTATGGTGGTGCGAGGAGACCTCCTGGTGGTGAGAGCA 1027 Query 1042 GCATTTCATTGGTCTA 1057 ||||||| |||||||| Sbjct 1028 GCATTTCGTTGGTCTA 1043 Score = 135 bits (73), Expect = 6e-31 Identities = 86/92 (93%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 321 GATGATGGTAAATATGATCCAAATCACCAGACAAGAATCCATTACCATCAGGATCAGCTG 380 ||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 409 GATAATGGTAAAGATGATCCAAATCACCAGACAAGAATCCATTACCATCAAGATCAGC-G 467 Query 381 A-GCCAGATATCATTCAGCGGCGAAGAGAATG 411 | |||||||||| ||||||||||||||||||| Sbjct 468 AAGCCAGATATCTTTCAGCGGCGAAGAGAATG 499 Score = 130 bits (70), Expect = 3e-29 Identities = 82/88 (93%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 426 AATGGCAAAGATGATCCAAATCACCAGACAAGAATCCATTACCATCAAGATCAGAGAAGC 485 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 307 AATGGTAAAGATGATCCAAATCACCAGACAAGAATCCATTACCATCAGGATCAGCTAAGC 366 Query 486 CAGATATCTTTCAGCGGTGAAGAGAATG 513 |||||||| |||||||| |||||||||| Sbjct 367 CAGATATCATTCAGCGGCGAAGAGAATG 394 > Ahg932189 jgi|Araly1|932189|scaffold_400177.1 Length=964 Score = 65.8 bits (35), Expect = 7e-10 Identities = 43/46 (93%), Gaps = 3/46 (7%) Strand=Plus/Plus Query 148 ATTCCACCGCCGCTAATCGCTCTAACCAGCCGTCT---GATGGAAT 190 ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 25 ATTCCACCGCCGCTAATCGCTCTAACCAGCCGTCTTCTGATGGAAT 70 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46433712906 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5