BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22270.1
Length=1243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481091 jgi|Araly1|481091|fgenesh2_kg.4__151__AT2G22270.1 1411 0.0
Ahg932189 jgi|Araly1|932189|scaffold_400177.1 65.8 7e-10
> Ahg481091 jgi|Araly1|481091|fgenesh2_kg.4__151__AT2G22270.1
Length=1114
Score = 1411 bits (764), Expect = 0.0
Identities = 908/976 (93%), Gaps = 15/976 (2%)
Strand=Plus/Plus
Query 91 ATCCGCATCATTCCACCGCCGATCTTCTTTCTTGGTCTGAGATCCGCCGTCCTGACTATT 150
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 74 ATCCGCATCATTCCACCGCCGATCTTCTTTCTTGGTCTGAGATCCGTCGTCCTGACTATT 133
Query 151 CCACCGCCGCTAATCGCTCTAACCAGCCGTCTGATGGAATGAACGATGTACTTGGCGGCG 210
|||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||
Sbjct 134 CCACCGCCGCTAATCGCTCTAACCAGCCGTCTGATGGAATGAGCGAGGTGCTTGGCGGCG 193
Query 211 GCGGTCAGATCACTAACGCGGAAACTAAATCACTTAATACGAATGTTTCGCATAGGAAGA 270
||||||||||||||||||||||| | |||| ||||||| ||||||||| |||||||||
Sbjct 194 GCGGTCAGATCACTAACGCGGAATCCGAATCGCTTAATAAGAATGTTTCTTATAGGAAGA 253
Query 271 ACTGTTCTGGGCATAAGCTAAAAGAAATGACTGGTAGTGACATATTCTCTGATGATGGTA 330
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 254 ATTGTTCTGGGCATAAGCTAAAAGAAATGACTGGTAGTGACATATTCTCTGATAATGGTA 313
Query 331 AATATGATCCAAATCACCAGACAAGAATCCATTACCATCAGGATCAGCTGAGCCAGATAT 390
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 314 AAGATGATCCAAATCACCAGACAAGAATCCATTACCATCAGGATCAGCTAAGCCAGATAT 373
Query 391 CATTCAGCGGCGAAGAGAATG-CA--ACAA-C-TCCCATGAATGGCAAAGATGATCCAAA 445
||||||||||||||||||||| || | || | | || ||||| ||||||||||||||
Sbjct 374 CATTCAGCGGCGAAGAGAATGCCATGA-AACCAAACGAT-AATGGTAAAGATGATCCAAA 431
Query 446 TCACCAGACAAGAATCCATTACCATCAAGATCAGAGAAGCCAGATATCTTTCAGCGGTGA 505
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 432 TCACCAGACAAGAATCCATTACCATCAAGATCAGCGAAGCCAGATATCTTTCAGCGGCGA 491
Query 506 AGAGAATGTGACTCCAAAGAAACCAACCACTTTAAACGAGGCTGCTAAGCAAAAGGAGTT 565
||||||||||||||| |||||||||||||||| ||||||||| || ||||||||||||||
Sbjct 492 AGAGAATGTGACTCCGAAGAAACCAACCACTTCAAACGAGGCGGCAAAGCAAAAGGAGTT 551
Query 566 GAGCAGGACTGTAGAAACCCAAGCAGATTCGAAGTGTAAGAAGAAACAGATATCGAACAC 625
|||||||||| |||||||||||||||||| ||| |||||||||||||| || ||||||
Sbjct 552 GAGCAGGACTATAGAAACCCAAGCAGATTTAAAGAGTAAGAAGAAACAGGCATTGAACAC 611
Query 626 CAAGAATAAAGCAATGAGTGGGCATGACATCTTTGCATCTCCTGAAAGCCAACCTCGCCG 685
||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 612 CAAGACCAAAGCAATGAGTGGTCATGACATCTTCGCATCTCCTGAAAGCCAACCTCGCCG 671
Query 686 CTTGTTTGGTGGTGCAACACAATC-AGAAGTTAAAGGAAATAAGAACACGGAGGAATCTG 744
|||| || |||||||||||| | ||||||| |||||||||||||||||| ||||||||
Sbjct 672 CTTG-TT--CGGTGCAACACAA-CAAGAAGTTGAAGGAAATAAGAACACGGGGGAATCTG 727
Query 745 CACCGAGGAGCTCGCGTGCATCTGTCAAAACCTCAAACGGGC-AA--AGCAGCAACAGAT 801
||||||| ||||||||||||||||| ||| ||| ||||||| || ||||||||||||
Sbjct 728 CACCGAGAAGCTCGCGTGCATCTGTTAAAGCCTTTAACGGGCAAAGCAGCAGCAACAGAC 787
Query 802 TGTTTAGTGAAGAACATGTTGTGAAGTCATCAAAGAAGATACATAACCAGAAGTCTCAGT 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 TGTTTAGTGAAGAACATGTTGTGAAGTCATCAAAGAAGATACATAACCAGAAGTCTCAGT 847
Query 862 TTCAGGGGCTCACAAGCAATGGTATCTTCAAATCTGATAAAATCCCTCCTGGTTATTCAG 921
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 848 CTCAGGGACTCACAAGCAATGGTATCTTCAAATCTGATAAAATCCCTCCTGGCTATTCTG 907
Query 922 AGAAGATGCAAAGCTCAGCCAAAAAGCGGGAAATGAGCGGACACAATATATTTGCAGACG 981
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 908 AGAAGATGCAAAGCTCAGCTAAAAAGCGGGAAATGAGCGGACACAATATATTTGCAGACG 967
Query 982 GGAAGTCGGAATATCGGGATTACTATGGTGGTGCGAGGAGACCTCCTGGTGGCGAGAGCA 1041
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 968 GGAAATCGGAATATCGGGATTACTATGGTGGTGCGAGGAGACCTCCTGGTGGTGAGAGCA 1027
Query 1042 GCATTTCATTGGTCTA 1057
||||||| ||||||||
Sbjct 1028 GCATTTCGTTGGTCTA 1043
Score = 135 bits (73), Expect = 6e-31
Identities = 86/92 (93%), Gaps = 2/92 (2%)
Strand=Plus/Plus
Query 321 GATGATGGTAAATATGATCCAAATCACCAGACAAGAATCCATTACCATCAGGATCAGCTG 380
||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 409 GATAATGGTAAAGATGATCCAAATCACCAGACAAGAATCCATTACCATCAAGATCAGC-G 467
Query 381 A-GCCAGATATCATTCAGCGGCGAAGAGAATG 411
| |||||||||| |||||||||||||||||||
Sbjct 468 AAGCCAGATATCTTTCAGCGGCGAAGAGAATG 499
Score = 130 bits (70), Expect = 3e-29
Identities = 82/88 (93%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 426 AATGGCAAAGATGATCCAAATCACCAGACAAGAATCCATTACCATCAAGATCAGAGAAGC 485
||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 307 AATGGTAAAGATGATCCAAATCACCAGACAAGAATCCATTACCATCAGGATCAGCTAAGC 366
Query 486 CAGATATCTTTCAGCGGTGAAGAGAATG 513
|||||||| |||||||| ||||||||||
Sbjct 367 CAGATATCATTCAGCGGCGAAGAGAATG 394
> Ahg932189 jgi|Araly1|932189|scaffold_400177.1
Length=964
Score = 65.8 bits (35), Expect = 7e-10
Identities = 43/46 (93%), Gaps = 3/46 (7%)
Strand=Plus/Plus
Query 148 ATTCCACCGCCGCTAATCGCTCTAACCAGCCGTCT---GATGGAAT 190
||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 25 ATTCCACCGCCGCTAATCGCTCTAACCAGCCGTCTTCTGATGGAAT 70
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46433712906
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5