BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22290.1
Length=748
Score E
Sequences producing significant alignments: (Bits) Value
Ahg899521 jgi|Araly1|899521|Al_scaffold_0004_171 1005 0.0
Ahg943990 jgi|Araly1|943990|scaffold_700219.1 503 8e-142
> Ahg899521 jgi|Araly1|899521|Al_scaffold_0004_171
Length=624
Score = 1005 bits (544), Expect = 0.0
Identities = 596/622 (96%), Gaps = 0/622 (0%)
Strand=Plus/Plus
Query 125 ATGGCGTCGGTGTCACCATTAGCGAAATATAAACTGGTGTTCTTAGGAGATCAATCTGTC 184
|||||||||||||||||||| || ||||||||| |||||||| |||||||||||||||||
Sbjct 1 ATGGCGTCGGTGTCACCATTGGCAAAATATAAATTGGTGTTCCTAGGAGATCAATCTGTC 60
Query 185 GGCAAAACCAGCATCATCACTCGTTTCATGTATGATAAGTTCGACACAACCTACCAGGCT 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGCAAAACCAGCATCATCACTCGTTTCATGTATGATAAGTTCGACACAACCTACCAGGCT 120
Query 245 ACTATTGGAATTGACTTCTTATCGAAAACAATGTACCTTGAAGATCGAACTGTTCGTCTG 304
||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||
Sbjct 121 ACTATTGGAATAGACTTCTTATCTAAAACAATGTACCTTGAAGATCGCACTGTTCGTTTG 180
Query 305 CAGCTATGGGATACAGCTGGACAAGAAAGATTCAGGAGTTTAATACCAAGTTACATAAGA 364
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 181 CAGCTATGGGATACTGCTGGACAAGAAAGATTCAGGAGTCTAATACCAAGTTACATCAGA 240
Query 365 GATTCTTCTGTTGCAGTTGTTGTTTATGATGTAGCCAATAGACTCTCATTTCTCAACACA 424
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATTCTTCTGTTGCTGTTGTTGTTTATGATGTAGCCAATAGACTCTCATTTCTCAACACA 300
Query 425 TCCAAGTGGATAGAAGAAGTCCGTAATGAAAGAGCCGGCGATGTTATCATTGTTCTTGTC 484
||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 301 TCCAAGTGGATCGAAGAAGTCCGTACTGAAAGAGCTGGCGATGTTATCATTGTTCTTGTC 360
Query 485 GGTAACAAGACTGATCTTGTCGAAAAACGGCAAGTTTCTATTGAGGAAGGAGATAGCAAA 544
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 361 GGTAACAAGACTGATCTTGTCGAAAAAAGGCAAGTTTCTATTGAAGAAGGAGATAGCAAA 420
Query 545 GGTCGTGAATACGGAGTTATGTTCATTGAGACGAGCGCGAAAGCAGGATTCAATATTAAG 604
||||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 421 GGTCGTGAATATGGAGTTATGTTCATCGAGACAAGCGCGAAGGCAGGATTCAATATTAAG 480
Query 605 CCTTTGTTTCGCAAAATCGCTGCGGCATTACCGGGAATGGAATCGTATTCAAACACTAAA 664
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 481 CCTTTGTTTCGCAAAATCGCTGCGGCTTTACCGGGAATGGAATCGTATTCAAACACTAAA 540
Query 665 AATGAGGATATGGTTGATGTAAACCTGAAACCAACTTCGAATTCATCCCAAGGTGATCAA 724
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 AATGAGGATATGGTTGACGTAAACCTGAAACCGACTTCGAATTCATCCCAAGGTGATCAA 600
Query 725 CAAGGAGGAGCTTGTTCATGTT 746
|||||||||| |||||| ||||
Sbjct 601 CAAGGAGGAGGTTGTTCCTGTT 622
> Ahg943990 jgi|Araly1|943990|scaffold_700219.1
Length=686
Score = 503 bits (272), Expect = 8e-142
Identities = 514/628 (82%), Gaps = 28/628 (4%)
Strand=Plus/Plus
Query 125 ATGGCGTCGGTGTCACCATTAGCGAAA-TATAAACTGGTGTTCTTAGGAGATCAATCTGT 183
|||||| |||| ||||| || || ||| | ||||||||||||||||||||||||||||||
Sbjct 21 ATGGCGGCGGTTTCACCTTTGGC-AAAGTTTAAACTGGTGTTCTTAGGAGATCAATCTGT 79
Query 184 CGGCAAAACCAGCATCATCACTCGTTTCATGTATGATAAGTTCGACACAACCTACCAGGC 243
||| |||||||||||||||||||||||||||||||| || |||||||| || |||||| |
Sbjct 80 CGGAAAAACCAGCATCATCACTCGTTTCATGTATGACAAATTCGACACCACTTACCAGCC 139
Query 244 TACTATTGGAATTGACTT-CTTATCGAAAACAATGTACCTTGAAGATCGAACTGTTCGTC 302
||| || ||||| || || ||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 140 TACCATCGGAATCGATTTTCTT-TCGAAAACAATGTACCTCGAAGATCGAACAGTTCGTT 198
Query 303 TGCAGCTATGGGATACAGCTGGACAAGAAAGATTCAGGAGTTTAATACCAAGTTACATAA 362
|||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||| |
Sbjct 199 TGCAGCTATGGGATACGGCTGGACAAGAAAGATTCAGGAGTCTAATCCCAAGTTACATCA 258
Query 363 GAGATTCTTCTGTTGC-AGTTGTTGTTTATGATGTAGCCAATAGACTCTCATTTCTCAAC 421
|||||||||||||||| | ||||||| ||||||||| ||||||| | | ||||| ||
Sbjct 259 GAGATTCTTCTGTTGCCA-TTGTTGTATATGATGTATCCAATAGGCAAACGTTTCTGAAT 317
Query 422 AC-ATCCAAGTGGATAGAAGAAGTCCGTA-ATGAAAGAGC-CG--GCGATGTTATCATTG 476
|| | | || ||||| || || || | | | ||||||| | || ||||||| ||||
Sbjct 318 ACCA-CGAAATGGATTGAGGATGTACACAGA-GAAAGAGGTCAAAGCAATGTTATTATTG 375
Query 477 TTCTTGTCGGTAACAAGACTGATCTTGTCGAAAAACGGCAAGTTTCTATTGAG-GAAGGA 535
||||||| || ||||| ||||||||||| |||||| ||||||| || || || |||||
Sbjct 376 TTCTTGTTGGAAACAAAACTGATCTTGTTGAAAAAAGGCAAGTATCAATC-AGTGAAGGG 434
Query 536 GATAG-CAAAGGTCGTGAATACGGAGTTATGTTCATTGAGACGAGCGCGAAAGCAGGATT 594
|| || ||| ||| || || ||||| |||||||||||||| || || |||| | |||
Sbjct 435 GA-AGACAAGGGTAAAGAGTATGGAGTGATGTTCATTGAGACCAGTGCCAAAGAAA-ATT 492
Query 595 -CAATATTAAGCCTTTGTTTCGCAAAATCGCTGCGGCATTACCGGGAATGGA-ATCGTAT 652
||| |||||| ||||||| || || || ||||| || |||||||| |||| | | |||
Sbjct 493 TCAACATTAAGGCTTTGTTCCGGAAGATTGCTGCAGCTTTACCGGGTGTGGACA-CATAT 551
Query 653 TCAAACACTAA--AAAT--GAGGATATGGTTGATGTAAACCTGAA-ACCAACTTCGAATT 707
||| | || |||| ||||| ||||||||||| || || || |||| |||| ||||
Sbjct 552 TCATTGGC-AACGAAATCCGAGGACATGGTTGATGTGAATCTAAAGACCA-CTTCAAATT 609
Query 708 CATCCCAAGGTGATCAACAAGGAGGAGC 735
|||| |||||||| ||||||||||||||
Sbjct 610 CATCACAAGGTGAGCAACAAGGAGGAGC 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27562868991
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5