BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22310.2
Length=1292
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490777 jgi|Araly1|490777|fgenesh2_kg.7__210__AT4G39910.1 1038 0.0
Ahg481095 jgi|Araly1|481095|fgenesh2_kg.4__155__AT2G22310.1 361 9e-99
> Ahg490777 jgi|Araly1|490777|fgenesh2_kg.7__210__AT4G39910.1
Length=1533
Score = 1038 bits (562), Expect = 0.0
Identities = 857/996 (86%), Gaps = 33/996 (3%)
Strand=Plus/Plus
Query 216 GCTCTTTATTTTTGTGCTCCCTTT-CGTGAACAATTGCTTGAACATTATGCAAATAAT-A 273
||||||||||| |||| | ||||| |||||||||||||||||| | ||| | | |||| |
Sbjct 255 GCTCTTTATTTCTGTG-TTCCTTTCCGTGAACAATTGCTTGAATACTATACCAGTAATAA 313
Query 274 AAGC-T----GATGCTGAGGAGAATCTCT-TGACCTGCTTGGCTGACTTATTTTCGCAGA 327
|||| | |||||||| |||||||| | |||||||| |||| ||||| ||||||||||
Sbjct 314 AAGCGTCGCCGATGCTGAAGAGAATCT-TATGACCTGCCTGGCAGACTTGTTTTCGCAGA 372
Query 328 TAAGTTCCCAGAAGAAGAAAACAGGAGTTATCGCTCCGAAGCGCTTTGTGCAAAGGTTGA 387
|||||||||||||||||||||| || ||||| || || ||||| ||||| || |||||||
Sbjct 373 TAAGTTCCCAGAAGAAGAAAACTGGTGTTATTGCGCCTAAGCGATTTGTACAGAGGTTGA 432
Query 388 AGAAACAGAATGAGCT-TTTCCGGAGTTATATGCATCAGGATGCACATGAGTTCCTGAAT 446
||||||| |||||||| ||| ||||| |||||||| |||||||||||||| |||||||||
Sbjct 433 AGAAACAAAATGAGCTGTTT-CGGAGCTATATGCACCAGGATGCACATGAATTCCTGAAT 491
Query 447 TATTTGCTAAATGAACTTGTTGAGAT-CTTAGAGAAAGAGACACAAGCCACAAAAGCAG- 504
|||||||| |||||| ||||||| || | | ||||||||| || |||| |||||| | |
Sbjct 492 TATTTGCTGAATGAAGTTGTTGACATAC-TGGAGAAAGAGGCAAAAGCTACAAAAACTGA 550
Query 505 ACAATGAAA---C-T--TCATCATCTCCTGAAAAGATTGCAAATGTACTGAAAGCTCCCC 558
|| |||||| | | ||||||||||| |||||||||||||||| |||||||| ||| |
Sbjct 551 AC-ATGAAACCTCGTCATCATCATCTCCCGAAAAGATTGCAAATGGACTGAAAGTTCCTC 609
Query 559 TGGCAAATGGTG-T-T-CATAAAGAGCCAATTGTTACTTGGGTGCACAAGATTTTTCAGG 615
||||||||||| | | || |||||||| |||||||||||||||||||| ||||||||||
Sbjct 610 AGGCAAATGGTGTTGTGCACAAAGAGCCTATTGTTACTTGGGTGCACAATATTTTTCAGG 669
Query 616 GTATACTTACCAACGAGACAAGGTGTCTACGGTGTGAGACAGTAACAGCAAGAGATGAAA 675
| |||||||||||||||||||||||||| || ||||| ||||| ||||||||||| ||||
Sbjct 670 GCATACTTACCAACGAGACAAGGTGTCTGCGATGTGAAACAGTGACAGCAAGAGACGAAA 729
Query 676 CTTTCCTAGACCTGAGCCTTGATATTGAACAGAACAGTTCGATAACTAGCTGTTTGAAAA 735
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 CATTCCTAGACCTAAGCCTTGATATTGAACAGAACAGTTCGATAACTAGCTGTTTGAAAA 789
Query 736 ACTTCAGCTCCACAGAGACTCTACATGCAGAAGACAAGTT-TTTCTGTGACAAATGCTGC 794
||||||||||||||||||| || || || |||||||| || ||| |||||||||||||||
Sbjct 790 ACTTCAGCTCCACAGAGACGCTTCACGCTGAAGACAAATTCTTT-TGTGACAAATGCTGC 848
Query 795 AGTTTACAAGAAGCGCAGAAGA-GAATGAAGATTAAGAAACCGCCACACATCTTAGTTAT 853
|| ||||||||||| ||||| | |||||||||| ||||| || |||||||||||||| ||
Sbjct 849 AGCTTACAAGAAGCACAGAA-ACGAATGAAGATCAAGAAGCCACCACACATCTTAGTCAT 907
Query 854 ACATCTGAAA-CGGTTCAAATACATGGAACAGTTGGGCCGCTACAAGAAGCTATCGTA-C 911
||||| ||| || ||||||||||| |||||| | ||||||||||||||||| || || |
Sbjct 908 CCATCT-AAAGCGATTCAAATACATCGAACAGCTAGGCCGCTACAAGAAGCTCTCATATC 966
Query 912 AGAGTCGTCTTCCCTCTGGAACTGAAACTCAGCAACACAGTGGATGAATATGTGGACATT 971
|||| ||||||||| |||| || ||||| |||||||||||||| ||| | ||| |
Sbjct 967 -GAGTTGTCTTCCCTTTGGAGCTAAAACTGAGCAACACAGTGGAACCATACGCAGACGTG 1025
Query 972 GAGTACTCTCTCTTTGCAGTCGTGGTTCATGTCGGAAGTGGACCTAACCACGGTCATTAT 1031
||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 1026 GAGTACTCTCTGTTTGCAGTGGTGGTTCATGTCGGAAGTGGACCTAACCATGGTCACTAC 1085
Query 1032 GTTAGCCTCGTGAAATCCCATAACCACTGGCTCTTCTTTGATGATGAGAGTGTCGAAATA 1091
|| ||||| |||||| ||||||||| |||||||||||||||||||||| ||| || ||
Sbjct 1086 GTCAGCCTTGTGAAAAGCCATAACCATTGGCTCTTCTTTGATGATGAGAATGTTGAGATG 1145
Query 1092 ATTGAAGAATCTGCTGTTCAAACATTCTTCGGTTCATCGCAAGAGTACTCAAGTAATACT 1151
||||||||||| ||||||||||||||||| || || || || ||||| ||||| ||||||
Sbjct 1146 ATTGAAGAATCAGCTGTTCAAACATTCTTTGGATCGTCTCAGGAGTATTCAAGCAATACT 1205
Query 1152 GATCATGGCTACATCTTGTTATACGAGAGCCTCGGA 1187
|||||||| |||||| |||| || |||||||| |||
Sbjct 1206 GATCATGGTTACATCCTGTTCTATGAGAGCCTTGGA 1241
Score = 180 bits (97), Expect = 3e-44
Identities = 117/127 (92%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 48 CTAGGGCTGATGGGCGCGGCGGGGTCCAAACTCGAGAAAGCTCTCGGCGACCAGTTCCCG 107
|||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 129 CTAGGGCTAATGGGCGCCGCGGGCTCCAAACTCGAGAAAGCTCTCGGCGACCAGTTCCCC 188
Query 108 GAAGGAGAACGATACTTCGGTTTCGAAAATTTCGGCAACACTTGTTACTGTAACAGTGTT 167
||||||||||| ||||| || ||||| ||||||||||||||||| ||||||||||| |||
Sbjct 189 GAAGGAGAACGCTACTTTGGATTCGAGAATTTCGGCAACACTTGCTACTGTAACAGCGTT 248
Query 168 TTGCAGG 174
|||||||
Sbjct 249 TTGCAGG 255
> Ahg481095 jgi|Araly1|481095|fgenesh2_kg.4__155__AT2G22310.1
Length=1017
Score = 361 bits (195), Expect = 9e-99
Identities = 217/228 (95%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 768 GACAAGTTTTTCTGTGACAAATGCTGCAGTTTACAAGAAGCGCAGAAGAGAATGAAGATT 827
||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GACAAATTTTGCTGTGATAAATGCTGCAGTTTACAAGAAGCGCAGAAGAGAATGAAGATC 594
Query 828 AAGAAACCGCCACACATCTTAGTTATACATCTGAAACGGTTCAAATACATGGAACAGTTG 887
||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 595 AAGAAACCGCCACACATCTTAGTTATACATCTGAAACGGTTTAAATATATCCAACAGTTG 654
Query 888 GGCCGCTACAAGAAGCTATCGTACAGAGTCGTCTTCCCTCTGGAACTGAAACTCAGCAAC 947
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 655 GGCCGCTACAAGAAGTTATCTTACAGAGTCGTCTTCCCTCTGGAACTGAAACTCAGCAAC 714
Query 948 ACAGTGGATGAATATGTGGACATTGAGTACTCTCTCTTTGCAGTCGTG 995
|||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 715 ACAGTGGATGAATATGTGGACATTGAGTACTCTCTCTTCGCAGTCGTG 762
Score = 279 bits (151), Expect = 3e-74
Identities = 194/213 (91%), Gaps = 10/213 (5%)
Strand=Plus/Plus
Query 1082 TGTCGAAATAATTGAAGAATCTGCTGTTCAAACATTCTTCGGTTCATCGCAAGAGTACTC 1141
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 765 TGTCGAAATGATTGAAGAATCTGCTGTCCAAACATTCTTCGGTTCATCGCAAGAGTACTC 824
Query 1142 AAGTAATACTGATCATGGCTACATCTTGTTATACGAGAGCCTCGGAACAAGATAGAGAAA 1201
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 AAGCAATACTGATCATGGCTACATCTTGTTATACGAGAGCCTCGGAACAAGATAGAGAAA 884
Query 1202 AAAGCTTTTAGTCATTTGACAAGAACATAACCTCTC-C-TCTCTTACTCTCTCTTCGAA- 1258
| ||||||||||||||||||||||||||||||||| | |||||| | | ||| ||
Sbjct 885 AGGGCTTTTAGTCATTTGACAAGAACATAACCTCTCTCCTCTCTTTGTATA-CTT--AAT 941
Query 1259 GAACAT-AACCATGTACAGTTTTAA-TGACAAG 1289
||| || |||||||||||||||||| | |||||
Sbjct 942 GAA-ATCAACCATGTACAGTTTTAACT-ACAAG 972
Score = 196 bits (106), Expect = 3e-49
Identities = 209/256 (82%), Gaps = 17/256 (7%)
Strand=Plus/Plus
Query 84 AAAGCTCTCGGCGACCAGTTCCCGGAAGGAGAACGATACTTCGGTTTCGAAAATTTCGGC 143
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 AAAGCTCTGGGCGACCAGTTCCCGGAAGGAGAACGATACTTGGGTTTCGAAAATTTCGGC 60
Query 144 AACACTTGTTACTGTAACAGTGTTTTGCAG-GACTGGGTTGTTGATCTTAG-G----T-- 195
|||||||||||||||||||||||||||||| |||| || | | || ||| | |
Sbjct 61 AACACTTGTTACTGTAACAGTGTTTTGCAGAGACTTC-TTCTAG-TCCTAGAGGGGCTAA 118
Query 196 C-TGTTTTGCATT-CTATGTTTGC-TCTTTA-TTTTTGTGCTCCCT-TTCGTGAACAATT 250
| ||| | | | |||| || || | | ||||| | | ||||||||| |||
Sbjct 119 CCTGTACAGAAGAACCATGT--GCATCATCAGTTTTTAAGATATGGATTCGTGAACTATT 176
Query 251 GCTTGAACATTATGCAAATAATAAAGCTGATGCTGAGGAGAATCTCTTGACCTGCTTGGC 310
|||| |||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 177 GCTTCAACATTATGCAAATGATCAAGCTGATGCTCAGGAGAATCTCTTGACCTGCTTGGC 236
Query 311 TGACTTATTTTCGCAG 326
||||| |||||||||
Sbjct 237 AGACTTGTTTTCGCAG 252
Score = 84.2 bits (45), Expect = 2e-15
Identities = 55/59 (93%), Gaps = 4/59 (7%)
Strand=Plus/Plus
Query 561 GCAAATGGTGTTCAT--A--AAGAGCCAATTGTTACTTGGGTGCACAAGATTTTTCAGG 615
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCAAATGGTGTTCATAAATTAAGAGCCAATTGTTACTTGGGTGCACAAGATTTTTCAGG 479
Score = 75.0 bits (40), Expect = 1e-12
Identities = 44/46 (96%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 327 ATAAGTTCCCAGAAGAAGAAAACAGGAGTTATCGCTCCGAAGCGCT 372
|||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 350 ATAAGTTCCCAGAAGAAGAAAACAGGAGTTATTGCTCCCAAGCGCT 395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48301735839
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5