BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G22320.1

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg343793 jgi|Araly1|343793|fgenesh1_pg.C_scaffold_4000135           455    1e-127


> Ahg343793 jgi|Araly1|343793|fgenesh1_pg.C_scaffold_4000135
Length=321

 Score =  455 bits (246),  Expect = 1e-127
 Identities = 300/325 (92%), Gaps = 8/325 (2%)
 Strand=Plus/Plus

Query  16   ATGGCGGGAGTGGATTATCAAGAATGGGGACTTAGTATTGAGGAGTGGGAGCTTCAAGAA  75
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1    ATGGCGGGAGTGGATTATCAAGAATGGGGACTTAGTATTGAGGAATGGGAGCTTCAAGAA  60

Query  76   TCCGTAGTTCCGCTCCATTTGCTTGCTGATGATTTTAaagaagaagaa---caaga-aga  131
            || || ||||||| ||||||| |||||||||||||| |||||||||||   | ||| | |
Sbjct  61   TCTGTGGTTCCGCCCCATTTGATTGCTGATGATTTTGAAGAAGAAGAACTTCGAGACA-A  119

Query  132  agaTCATCAAGACAATGATGATGATGATAGAGTTTTAGATGGCTTAGCGGTTAAACAATC  191
            |||| ||   ||  |||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct  120  AGATGAT---GATGATGATGATGATGATAGAGGTTTAGATGGCTTAGCGGTTAAAGAATC  176

Query  192  TGTCACTCGTGACATTAGAGCTTCGGTTGGGAAATTTATTGAGCAATCTATGTCACATAT  251
            ||||||| ||| |||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct  177  TGTCACTTGTGGCATTAGAGCTTCGGTTGGGAAATTGATTGAGCAATCTATCTCACATAT  236

Query  252  GATTGTTCACCTCAAACAGCTTAAGTTCTTAACACTTCTTCTTGAGAACTTTTTGTTTAC  311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  237  GATTGTTCACCTCAAACAGCTTAAGTTCTTAACACTTCTTCTTGAGAACTTTTTGTTTAG  296

Query  312  CCATGTTCTTGATTTTCTTTTGTAA  336
            |||||||||||||||||||||||||
Sbjct  297  CCATGTTCTTGATTTTCTTTTGTAA  321



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11904543768


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5