BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G22320.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value Ahg343793 jgi|Araly1|343793|fgenesh1_pg.C_scaffold_4000135 455 1e-127 > Ahg343793 jgi|Araly1|343793|fgenesh1_pg.C_scaffold_4000135 Length=321 Score = 455 bits (246), Expect = 1e-127 Identities = 300/325 (92%), Gaps = 8/325 (2%) Strand=Plus/Plus Query 16 ATGGCGGGAGTGGATTATCAAGAATGGGGACTTAGTATTGAGGAGTGGGAGCTTCAAGAA 75 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1 ATGGCGGGAGTGGATTATCAAGAATGGGGACTTAGTATTGAGGAATGGGAGCTTCAAGAA 60 Query 76 TCCGTAGTTCCGCTCCATTTGCTTGCTGATGATTTTAaagaagaagaa---caaga-aga 131 || || ||||||| ||||||| |||||||||||||| ||||||||||| | ||| | | Sbjct 61 TCTGTGGTTCCGCCCCATTTGATTGCTGATGATTTTGAAGAAGAAGAACTTCGAGACA-A 119 Query 132 agaTCATCAAGACAATGATGATGATGATAGAGTTTTAGATGGCTTAGCGGTTAAACAATC 191 |||| || || |||||||||||||||||| |||||||||||||||||||||| |||| Sbjct 120 AGATGAT---GATGATGATGATGATGATAGAGGTTTAGATGGCTTAGCGGTTAAAGAATC 176 Query 192 TGTCACTCGTGACATTAGAGCTTCGGTTGGGAAATTTATTGAGCAATCTATGTCACATAT 251 ||||||| ||| |||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 177 TGTCACTTGTGGCATTAGAGCTTCGGTTGGGAAATTGATTGAGCAATCTATCTCACATAT 236 Query 252 GATTGTTCACCTCAAACAGCTTAAGTTCTTAACACTTCTTCTTGAGAACTTTTTGTTTAC 311 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 237 GATTGTTCACCTCAAACAGCTTAAGTTCTTAACACTTCTTCTTGAGAACTTTTTGTTTAG 296 Query 312 CCATGTTCTTGATTTTCTTTTGTAA 336 ||||||||||||||||||||||||| Sbjct 297 CCATGTTCTTGATTTTCTTTTGTAA 321 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11904543768 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5