BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22330.1
Length=1883
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481097 jgi|Araly1|481097|fgenesh2_kg.4__157__AT2G22330.1 2959 0.0
Ahg490780 jgi|Araly1|490780|fgenesh2_kg.7__213__AT4G39950.1 1426 0.0
> Ahg481097 jgi|Araly1|481097|fgenesh2_kg.4__157__AT2G22330.1
Length=1854
Score = 2959 bits (1602), Expect = 0.0
Identities = 1783/1868 (95%), Gaps = 21/1868 (1%)
Strand=Plus/Plus
Query 23 TTCTCCTTCTCCTTCTTCCTTGCAAATGGATACTTTAGCTTCAAACTCTTCGGATCTCAC 82
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1 TTCTCCTTCTCCTTCTTCCTTACAAATGGATTCTTTAGCTTCAAACTCTTCGGATCTCGG 60
Query 83 GACCAAGTCAAGTCTCGGAATGTCGTCGTTTACCAACATGTATCTCCTCACAACGCTTCA 142
|||||||||||||| ||||| |||||| ||||||||||||||||| |||||||| ||||
Sbjct 61 GACCAAGTCAAGTCCCGGAACGTCGTCCTTTACCAACATGTATCTTCTCACAACATTTCA 120
Query 143 AGCCCTTGCGGCCCTTTGCT-TCTTGATGATTCTCAACAAAATAAAGTCATCTTCACGAA 201
|||||||| ||| ||| || |||||||||||||||| ||| ||||||||||||||||||
Sbjct 121 AGCCCTTGTAGCCATTT-CTCTCTTGATGATTCTCAAGAAATTAAAGTCATCTTCACGAA 179
Query 202 ACAAGAAGTTGCATCCTCTCCCGCCAGGACCCACCGGTTTTCCAATTGTTGGAATGATTC 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACAAGAAGTTGCATCCTCTCCCGCCAGGACCCACCGGTTTTCCAATTGTTGGAATGATTC 239
Query 262 CGGCGATGCTTAAAAACCGTCCAGTTTTCCGGTGGCTCCACAGCCTCATGAAGGAGCTTA 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGGCGATGCTTAAAAACCGTCCAGTTTTCCGGTGGCTCCACAGCCTCATGAAGGAGCTTA 299
Query 322 ACACGGAGATAGCTTGTGTGCGTCTAGGAAACACTCACGTGATCCCTGTGACATGTCCTA 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACACGGAGATAGCTTGTGTGCGTCTAGGAAACACTCACGTGATCCCTGTGACATGTCCTA 359
Query 382 AGATTGCACGTGAGATCTTCAAGCAACAAGACGCACTCTTTGCGTCAAGACCACTCACTT 441
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 360 AGATTGCACGTGAGATTTTCAAGCAACAAGACGCACTCTTCGCGTCAAGACCACTCACTT 419
Query 442 ATGCTCAAAAGATTCTCTCTAACGGCTACAAAACCTGCGTGATCACACCGTTTGGCGAAC 501
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATGCTCAAAAGATCCTCTCCAACGGCTACAAAACCTGCGTGATCACACCGTTTGGCGAAC 479
Query 502 AATTCAAGAAGATGAGGAAAGTGATCATGACAGAGATTGTTTGTCCAGCGAGACACCGTT 561
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 480 AATTCAAGAAGATGAGGAAAGTGATCATGACGGAGATTGTTTGTCCGGCGAGACACCGAT 539
Query 562 GGCTACACGACAATAGAGCTGAGGAAACCGATCACTTGACCGCTTGGCTCTACAACATGG 621
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 540 GGCTACACGACAATAGAGCTGAGGAAACCGATCACTTGACCGCTTGGCTTTACAACATGG 599
Query 622 TTAAGAACTCTGAACCAGTCGATCTCCGTTTTGTTACGAGGCATTATTGTGGAAATGCAA 681
|||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 600 TTAAAAACTCTGAGCCAGTCGATCTCCGTTTTGTTACGAGGCATTACTGTGGAAATGCAA 659
Query 682 TCAAGAGGCTTATGTTCGGGACGAGGACGTTCTCGGAGAAAACCGAAGCCGATGGTGGAC 741
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 660 TCAAGAGGCTTATGTTCGGGACGAGGACGTTCTCGGAGAAAACCGAAACCGATGGTGGAC 719
Query 742 CGACTTTGGAAGATATCGAGCATATGGATGCTATGTTCGAGGGGTTAGGGTTTACGTTTG 801
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 720 CGACTTTGGAAGATATCGAGCATATGGATGGTATGTTCGAGGGGTTAGGGTTTACGTTTG 779
Query 802 CGTTTTGTATATCGGATTATCTACCGATGCTTACGGGATTGGATCTAAACGGACATGAAA 861
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 780 CGTTTTGTGTATCGGATTATCTACCGATACTTACGGGATTGGATCTAAACGGACATGAAA 839
Query 862 AGATTATGAGAGAATCCAGTGCAATTATGGATAAATATCACGATCCTATAATTGATGAGA 921
|||||||||||||| | |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 840 AGATTATGAGAGAAGCTAGTGCAATCATGGATAAATATCACGATCCTATTATTGATGAGA 899
Query 922 GGATTAAGATGTGGAGAGAAGGTAAGAGAACTCAGATCGAAGATTTTCTAGACATTTTCA 981
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 900 GGATTAAGATGTGGAGAGAAGGTAAGAGAACTAAGATCGAAGATTTTCTAGATATTTTCA 959
Query 982 TCTCTATCAAGGACGAAGCTGGCCAGCCTTTGCTTACCGCTGATGAAATCAAACCAACCA 1041
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TTTCTATCAAGGACGAAGCTGGCCAGCCTTTGCTTACCGCTGATGAAATCAAACCAACCA 1019
Query 1042 TTAAGGAACTTGTAATGGCGGCGCCAGACAACCCATCAAACGCCGTGGAATGGGCCATTG 1101
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1020 TTAAGGAACTTGTAATGGCGGCGCCGGACAACCCATCAAACGCCGTGGAATGGGCCATGG 1079
Query 1102 CGGAGATGATAAACAAACCGGAGATCCTCCACAAAGCTATGGAAGAGATCGATAGAGTCG 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CGGAGATGATAAACAAACCGGAGATCCTCCACAAAGCTATGGAAGAGATCGATAGAGTCG 1139
Query 1162 TCGGAAAAGAAAGATTCGTCCAAGAATCCGATATACCAAAACTTAACTATGTTAAAGCTA 1221
|||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1140 TCGGCAAAGAAAGATTCGTCCAAGAATCCGATATCCCAAAACTTAACTACCTTAAAGCTA 1199
Query 1222 TTATCCGAGAAGCTTTCCGTCTTCATCCCGTCGCCGCCTTCAACCTCCCACACGTGGCAC 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TTATCCGAGAAGCTTTCCGTCTTCATCCCGTCGCCGCCTTCAACCTCCCACACGTGGCAC 1259
Query 1282 TCTCTGATACGACCGTCGCAGGTTACCATATTCCTAAAGGAAGTCAAGTTTTACTTAGCC 1341
|||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1260 TCTCCGACACGACCGTCGCAGGTTACCATATCCCTAAAGGAAGTCAAGTTTTACTTAGCC 1319
Query 1342 GTTACGGTCTTGGTCGTAACCCCAAGGTTTGGTCTGATCCACTTAGCTTCAAACCAGAAA 1401
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1320 GTTACGGTCTTGGTCGTAACCCTAAGGTTTGGTCTGATCCACTTAGCTTCAAACCGGAAA 1379
Query 1402 GGCATCTCAATGAGTGTTCGGAAGTGACTTTGACGGAGAATGATCTCCGTTTTATCTCGT 1461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GGCATCTCAATGAGTGTTCGGAAGTGACTTTGACGGAGAATGATCTCCGTTTTATCTCGT 1439
Query 1462 TTAGTACCGGAAAGAGAGGATGTGCTGCTCCGGCGTTAGGTACGGCGATAACGACCATGA 1521
||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1440 TTAGTACGGGAAAGAGAGGATGTGCTGCTCCGGCGTTAGGTACGGCGATAACCACTATGA 1499
Query 1522 TGCTAGCGAGGCTTTTGCAAGGGTTTAAGTGGAAACTAGCAGGAAGTGAGACACGTGTCG 1581
|||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1500 TGCTCGCCAGGCTTTTGCAAGGGTTTAAGTGGAAACTAGCCGGAAGTGAGACACGTGTCG 1559
Query 1582 AGCTTATGGAATCGAGTCATGATATGTTTCTTTCGAAGCCTTTGGTGT-TGGTCGGAGAA 1640
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||
Sbjct 1560 AGCTTATGGAATCGAGTCATGATATGTTTCTTTCGAAGCCTTTGGT-TATGGTCGGCGAA 1618
Query 1641 TTGAGATTGTCGGAGGACCTTTACCCAATGGTGAAGTGAGGCGACGGTGACGTACGGCGA 1700
|||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1619 TTGAGATTATCGGAGGACCTTTACCCAACGGTGAAGTGAGGCGACGGTGACCTACGGCGA 1678
Query 1701 GGATAATT-CCGTATATACTATGGATAACCCAAA-GTTTAGTGAATCACAAACCAAACTT 1758
||| |||| ||||||||| |||| ||||| |||| ||||||||||||| |||||||||||
Sbjct 1679 GGA-AATTTCCGTATATATTATGAATAACTCAAAAGTTTAGTGAATCATAAACCAAACTT 1737
Query 1759 TGTTCGGTTTTGGTCCTTTT-GGAAACACTTGATC-TGTGTTTTCTCTT-GCTTTTTTCT 1815
|||||||||||||||||||| |||||||||||| | ||||||| ||||| ||||||||||
Sbjct 1738 TGTTCGGTTTTGGTCCTTTTTGGAAACACTTGA-CGTGTGTTTCCTCTTTGCTTTTTTCT 1796
Query 1816 ATATGTATGTATTAATTTTGGTTTTGTTTTGATGATTAATAAGAAGGTATTCACATCGAG 1875
|||| || ||||||||||||||||||||||| | | || | |||||||||||||||
Sbjct 1797 ATAT--AT--ATTAATTTTGGTTTTGTTTTGAT-A--AG-AA-A-GGTATTCACATCGAG 1846
Query 1876 TATCTCTT 1883
||||||||
Sbjct 1847 TATCTCTT 1854
> Ahg490780 jgi|Araly1|490780|fgenesh2_kg.7__213__AT4G39950.1
Length=1865
Score = 1426 bits (772), Expect = 0.0
Identities = 1367/1653 (83%), Gaps = 46/1653 (3%)
Strand=Plus/Plus
Query 48 ATGGATAC-TTTAGCTTCAAACTCTTCGGATCTCACGACCAAGT-CAAGTCTCGGAATGT 105
||||| || |||| | ||||||||||||| |||||| ||| | | ||| | || || |
Sbjct 64 ATGGACACTTTTA-CCTCAAACTCTTCGGTTCTCACTACC-ACTGCAA--C-CGAAACAT 118
Query 106 CGTCGTTTACCAACATGTATCTCCTCACAACGCTTCAAGCCCTTGCGGCCCTTTGCTTCT 165
||||||||| || | ||||||||||| |||| ||||||||| ||| ||| | |||
Sbjct 119 CGTCGTTTAGCACCTTGTATCTCCTCTCAACACTTCAAGCCTTTGTGGCTATAACCTTAG 178
Query 166 TGATGATTCTCAACAAAATAAAGTC--ATCTTC-ACGAAACAAGAAGTTGCATCCTCTCC 222
||||| | ||||| ||| | | | | ||| | || ||| ||||| || | ||||||
Sbjct 179 TGATGCTACTCAAGAAACTGATGACAGATC-CCAAC-AAA-AAGAAACTG-A--CTCTCC 232
Query 223 CGCCAGGACCCACCGGTTTTCCAATTGTTGGAATGATTCCGGCGATGCTTAAA-AACCGT 281
|||| || ||||| || | || || | |||||||||||| |||||| |||| | ||||
Sbjct 233 CGCCGGGTCCCACAGGATGGCCGATCATCGGAATGATTCCGACGATGC-TAAAGAGCCGT 291
Query 282 CCAGTTTTCCGGTGGCTCCACAGCCTCATGAAGGAGCTTAACACGGAGATAGCTTGTGTG 341
|| ||||||||||||||||||||| |||||||| |||| || || |||||||| || |||
Sbjct 292 CCCGTTTTCCGGTGGCTCCACAGCATCATGAAGCAGCTCAATACTGAGATAGCCTGCGTG 351
Query 342 -CGTCTAGGAAACACTCACGTGATC-CCTGTGACATGTCCTAAGATTGCACGTGAGAT-C 398
|| |||||||||||||||||||| || || || || |||||||| ||||||||||| |
Sbjct 352 AGGT-TAGGAAACACTCACGTGATCACC-GTCACGTGCCCTAAGATAGCACGTGAGATGC 409
Query 399 TTCAAGCAACAAGACGCACTCTTTGCGTCAAGACCACTCACTTATGCTCAAAAGATTCTC 458
|||||||||||||||| ||||| || || || || | ||||| ||||| ||||| |||
Sbjct 410 -TCAAGCAACAAGACGCTCTCTTCGCCTCGAGGCCTTTAACTTACGCTCAGAAGATCCTC 468
Query 459 TCTAACGGCTACAAAACCTGCGTGATCACACCGTTTGGCGAACAATTCAAGAAGATGAGG 518
||||||||||||||||||||||||||||| || ||||| || ||||||||||| |||||
Sbjct 469 TCTAACGGCTACAAAACCTGCGTGATCACTCCCTTTGGTGACCAATTCAAGAAAATGAGA 528
Query 519 AAAGT-GATCATGACAGAGATT-GTTTGTCCAGCGAGACACCGTTGGCTACACGACAATA 576
||||| | | ||||| || | | |||||||||||||||||||| ||||| ||| | || |
Sbjct 529 AAAGTTG-TGATGACGGA-ACTCGTTTGTCCAGCGAGACACCGGTGGCTCCACCAGAAGA 586
Query 577 GAGCTGAGGAAACCGATCACTTGACCGCTTGGCTCTACAACATGGTTAAGAACTCTGAAC 636
|| | || |||| |||||| || ||||||||| | |||||||||||||||||||| | |
Sbjct 587 GATCAGAAGAAAACGATCATTTAACCGCTTGGGTATACAACATGGTTAAGAACTCGGG-C 645
Query 637 -CAGTCGATCTCCGTTTTGTTACGAGGCATTATTGTGGAAATGCAATCAAGAGGCTTATG 695
| || ||| |||| || | || |||||||| ||||||||||||||||||| |||||||
Sbjct 646 TCTGTAGATTTCCGGTTCATGACTAGGCATTACTGTGGAAATGCAATCAAGAAGCTTATG 705
Query 696 TTCGGGACGAGGACGTTCTCGGAGAAAACCGAAGCC-GATGGTGGACCGACTTTGGAAGA 754
|||||||| || |||||||| |||| || | | || || ||||||||||| | |||||
Sbjct 706 TTCGGGACAAGAACGTTCTCTAAGAACACTGCA-CCTGACGGTGGACCGACCGTAGAAGA 764
Query 755 TATCGAGCATATGGATGCTATGTTCGAGGGGTTAGGGTTTACGTTTGCGTTTTGTATATC 814
| | ||||| ||||| |||||||| || | ||||||||||||||||| |||||||| ||
Sbjct 765 TGTAGAGCACATGGAAGCTATGTTTGAAGCATTAGGGTTTACGTTTGCTTTTTGTATCTC 824
Query 815 GGATTATCTACCGATGCTTACGGGA-TTGGATCTAAACGGACATGAAAAGATTATGAGAG 873
||||||||||||||||| || ||| ||| |||| ||||| || || |||||||||||||
Sbjct 825 TGATTATCTACCGATGCTCACTGGACTTG-ATCTTAACGGTCACGAGAAGATTATGAGAG 883
Query 874 AATCCAGTGCAATTATGGATAAATATCACGATCCTATAATTGATGAGAGGATTAAGATGT 933
|||| ||||| ||||||||||| ||||| || || || || || |||||||| |||||||
Sbjct 884 AATCGAGTGCGATTATGGATAAGTATCATGACCCAATCATCGACGAGAGGATCAAGATGT 943
Query 934 GGAGAGAAGGTAAGAGAACTCAGATCGAAGATTTTCTAGACATTTTCATCTCTATCAAGG 993
|||||||||| ||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 944 GGAGAGAAGGAAAGAGAACTCAAATCGAAGATTTTCTTGATATTTTCATCTCTATCAAGG 1003
Query 994 ACGAAGCTGGCCAGCCTTTGCTTACCGCTGATGAAATCAAACCAACCATTAAGGAACTTG 1053
|||||| ||| | || ||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 1004 ACGAAGAAGGCAACCCATTGCTTACCGCCGATGAAATCAAACCCACCATTAAGGAGCTTG 1063
Query 1054 TAATGGCGGCGCCAGACAACCCATCAAACGCCGTGGAATGGGCCATTGCGGAGATGATAA 1113
||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| | |
Sbjct 1064 TAATGGCGGCGCCAGACAATCCATCAAACGCCGTCGAATGGGCCATGGCGGAGATGGTGA 1123
Query 1114 ACAAACCGGAGATCCTCCACAAAGCTATGGAAGAGATCGATAGAGTCGTCGGAAAAGAAA 1173
||||||||||||| |||| ||||| |||||||| ||||| |||||||||||||||||||
Sbjct 1124 ACAAACCGGAGATTCTCCGTAAAGCAATGGAAGAAATCGACAGAGTCGTCGGAAAAGAAA 1183
Query 1174 GATTCGTCCAAGAATCCGATATACCAAAACTTAACTATGTTAAAGCTATTATCCGAGAAG 1233
|| |||| || |||||||| || |||||||| ||||| || |||||||| |||| ||||
Sbjct 1184 GACTCGTTCAGGAATCCGACATCCCAAAACTAAACTACGTCAAAGCTATCCTCCGTGAAG 1243
Query 1234 CTTTCCGTCTTCATCCCGTCGCCGCCTTCAACCTCCCACACGTGGCACTCTCTGATACGA 1293
|||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| || |
Sbjct 1244 CTTTCCGTCTCCATCCCGTCGCCGCCTTTAACCTCCCACACGTGGCACTTTCTGACACAA 1303
Query 1294 CCGTCGCAGGTTACCATATTCCTAAAGGAAGTCAAGTT-TTACTTAGCCGTTACGGTCTT 1352
||||||| || || || || ||||||||||||||||| || |||||||| || || ||
Sbjct 1304 CCGTCGCCGGATATCACATCCCTAAAGGAAGTCAAGTCCTT-CTTAGCCGATATGGGCTG 1362
Query 1353 GGTCGTAACCCCAAGGTTTGGTCTGATCCACTTAGCTTCAAACCAGAAAGGCATCTCAAT 1412
|| |||||||| || |||||| | || ||||||||||| ||||| || || ||||||||
Sbjct 1363 GGCCGTAACCCGAAAGTTTGGGCCGACCCACTTAGCTTTAAACCGGAGAGACATCTCAAC 1422
Query 1413 GAGTGTTCGGAAGTGACTTTGACGGAGAATGATCTCCGTTTTATCTCGTTTAGTACCGG- 1471
|| || || ||||| |||||||| ||||| ||||| || ||||||||||||||||||||
Sbjct 1423 GAATGCTCCGAAGTCACTTTGACCGAGAACGATCTTCGGTTTATCTCGTTTAGTACCGGG 1482
Query 1472 AAAGAGAGGATGTGCTGCTCCGGCGTTAGGTACGGCGATAACGACCATGATGCTAGCGAG 1531
||| ||||| ||||||||||||||| |||| |||||| | || || |||||||| |||||
Sbjct 1483 AAA-AGAGGTTGTGCTGCTCCGGCGCTAGGAACGGCGTTGACCACGATGATGCTCGCGAG 1541
Query 1532 GCTT-TTGCAAGGGTTTAAGT-GGAAACTAGCAG-GAAGTGAGACACGTGTCGAGCTTAT 1588
||| || ||||| ||| | | |||| ||| | | ||| |||||||||||||||||| ||
Sbjct 1542 ACTTCTT-CAAGG-TTTCACTTGGAAGCTACCTGAGAA-TGAGACACGTGTCGAGCTGAT 1598
Query 1589 GGAATCGAGTCATGATATGTTTCTTTCGAAGCCTTTGGTGT-TGGTCGGAGAATTGAGAT 1647
|||||| ||||| ||| ||||||| | || || ||||| | ||||||| || ||||||
Sbjct 1599 GGAATCTAGTCACGATTTGTTTCTGGCTAAACCGTTGGT-TATGGTCGGTGAGCTGAGAT 1657
Query 1648 TGTCGGAGGACCTTTACCCAATGGTGAAGTGAG 1680
|| ||||| | || ||||| | |||||||||||
Sbjct 1658 TGCCGGAGCATCTCTACCCGACGGTGAAGTGAG 1690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70733584965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5