BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G22340.1 Length=1077 Score E Sequences producing significant alignments: (Bits) Value Ahg326521 jgi|Araly1|326521|fgenesh1_pm.C_scaffold_6001741 571 3e-162 Ahg948196 jgi|Araly1|948196|scaffold_800083.1 416 2e-115 Ahg919615 jgi|Araly1|919615|scaffold_100896.1 407 9e-113 Ahg948195 jgi|Araly1|948195|scaffold_800082.1 206 4e-52 > Ahg326521 jgi|Araly1|326521|fgenesh1_pm.C_scaffold_6001741 Length=1131 Score = 571 bits (309), Expect = 3e-162 Identities = 571/693 (82%), Gaps = 35/693 (5%) Strand=Plus/Plus Query 405 ATTTCTTATGACGCTAACATTGTCTAAAGATGGTGAT-GTTTACTCATTACCATGGTTGG 463 ||||||| || || ||| ||||||| | ||||||||| |||| | ||||||| ||||||| Sbjct 444 ATTTCTTGTGCCGTTAAAATTGTCTGATGATGGTGATGGTTT-CCCATTACCTTGGTTGG 502 Query 464 AATATTTGC-TCTCGTCTATTGATTCTATGGGATGT-GGAGTATATGGTTCTAAAATGAA 521 ||| ||| | |||||| ||||||| |||||| | | ||| |||||||||| ||| | || Sbjct 503 AAT-TTTTCGTCTCGTGGATTGATTGTATGGG-TTTAGGATTATATGGTTCCAAAGTTAA 560 Query 522 GGTG--GCAATTTTCTTTGAGGATGATGATGTTCATTACTTTTCATGGACGGAAGCCTCT 579 |||| | | |||| ||| | ||||| |||| | |||||||| | ||| ||||||||| | Sbjct 561 GGTGATG-ACTTTT-TTTTATGATGACGATGGTGATTACTTTCCTTGGTCGGAAGCCTTT 618 Query 580 CTTTTACCGGAAGGAG---ATTGTTTTATTCAATTGAATTGTCTTTGGTATAAACCC-AA 635 |||||| | ||| ||| || ||| |||||| |||| |||||||||||| ||||| || Sbjct 619 CTTTTATCAGAACGAGTTCATCGTTATATTCAGTTGACTTGTCTTTGGTA-CAACCCGAA 677 Query 636 AGAAG-ACACGAGCGTGATGGGACGGAAGATGGCCT-CA-AGTGACTGTGATAGTGATGT 692 ||| | |||||||||||| || ||||||||| | | ||||| |||||| ||||||| Sbjct 678 TCAAGTA-ACGAGCGTGATGAGAAGGAAGATGG--TGAAGAGTGATTGTGATGGTGATGT 734 Query 693 TCTCTCTTTCTCTTTGTTGGAAAATTTA-ACTGCAATGAAA-GGAGAAATCA-AGATCAC 749 | |||||||| | | || |||||| | | | | | |||||| ||| |||||| | | || Sbjct 735 TTTCTCTTTCCCGTGGTCGGAAAA-TCACATTTCTATGAAATGGA-AAATCATGGGT-AC 791 Query 750 AAATAGGCAACGATGCGTTAGGTGTTTCCAGCATATCATATTGAGTTTCAAAAGACAAGA 809 || ||||||| ||||| || ||||| || ||||| |||||||||||||||||||||| Sbjct 792 CAACCGGCAACGTTGCGTAAGACGTTTCGAGTATATCGTATTGAGTTTCAAAAGACAAGA 851 Query 810 AGCAGAATCATATCAAGCAACAATTCAGGTTTTTCTTTTAACT-AAAGTAATGCGAAAAG 868 | |||||||| |||||||||| | ||| |||||||||||| | | |||||||||||||| Sbjct 852 ATTAGAATCATTTCAAGCAACACTACAGTTTTTTCTTTTAA-TCAGAGTAATGCGAAAAG 910 Query 869 CATTTTGGAGTTTCATCTATATGGTGATAGCCAATTATGAGTATGTAAAGGAGGGACGTA 928 ||||||||||||||||||||| | |||||||||| || |||||||| |||| |||||||| Sbjct 911 CATTTTGGAGTTTCATCTATAAGATGATAGCCAACTACGAGTATGTGAAGGGGGGACGTA 970 Query 929 ACAGATTTTATCTGTTAGCCTGTAAGGCTTCCGATCGGCAAGCATGGTCAATTCCACTTC 988 ||||||||||||||||||| ||||||||||||||| || ||||| ||||| ||| ||| | Sbjct 971 ACAGATTTTATCTGTTAGCATGTAAGGCTTCCGATTGGAAAGCAGGGTCACTTCTACTCC 1030 Query 989 TTTATCGAAATTGT-TATCAATTTCTTTTATTTGTGTCAATGGTTGTATATGAGTGGTTT 1047 || ||||||||||| | |||||||| ||||||||||||||||||||||||||||||||| Sbjct 1031 TTCATCGAAATTGTGT-TCAATTTCCTTTATTTGTGTCAATGGTTGTATATGAGTGGTTC 1089 Query 1048 ATATATCTTGTAAAACT-T-TTTAT-GATATAA 1077 ||||||| ||||||||| | ||||| | ||||| Sbjct 1090 ATATATCATGTAAAACTCTCTTTATTG-TATAA 1121 > Ahg948196 jgi|Araly1|948196|scaffold_800083.1 Length=467 Score = 416 bits (225), Expect = 2e-115 Identities = 383/456 (84%), Gaps = 24/456 (5%) Strand=Plus/Plus Query 634 AAAGAAGACACGAGCGTGATGGGACGGAAGATGGCCTCA--AGTGACTGTGATAGTGATG 691 ||| ||| |||||||||||||||| ||||||||| | | |||| |||||| |||||| Sbjct 3 AAACAAGTCACGAGCGTGATGGGAAGGAAGATGG--TGATGGGTGATTGTGATGGTGATG 60 Query 692 TTCTCTCTTTCTCTTTGTTGGAAAAT-TTAACTGCAAT-GAAAGGAGAAATCA-AGATCA 748 |||| | |||| ||| || | ||||| || || || ||||| ||||||| || | | Sbjct 61 TTCTTTATTTCCCTTGGTCGAAAAATATT-GCTTTTATAAAAAGG-GAAATCACAGCT-A 117 Query 749 CAAATAGGCAACGATGCGTTAGGTGTTTCCAGCATATCATATTGAGTTTCAAAAGACAAG 808 | || ||||||||||||| ||| || || |||||||| ||||||||||||||||||||| Sbjct 118 CTAACCGGCAACGATGCGTAAGGCGTCTCGAGCATATCGTATTGAGTTTCAAAAGACAAG 177 Query 809 AAGCAGAATCATATCAAGCAACAATTCAGGTTT-TTCTTTTAACT-AAAGTAATGCGAAA 866 || |||||||| ||||||||||||| | |||| ||||||||| | | |||||||||||| Sbjct 178 AATTAGAATCATTTCAAGCAACAATT-AAGTTTCTTCTTTTAA-TCAGAGTAATGCGAAA 235 Query 867 AGCATTTTGGAGTTTCATCTATATGGTGATAGCCAATTATGAGTATGTAAAGGAGGGACG 926 |||||||||||||||||| |||| | ||||||||||| | |||||||| ||||||||||| Sbjct 236 AGCATTTTGGAGTTTCATTTATAAGATGATAGCCAATAACGAGTATGTGAAGGAGGGACG 295 Query 927 TAACAGATTTTATCTGTTAGCCTGTAAGGCTTCCGATCGGCA-AGCATGGTCAATTCCAC 985 |||||||||||||||||||||||||||||||||||| || | |||| ||||| |||||| Sbjct 296 TAACAGATTTTATCTGTTAGCCTGTAAGGCTTCCGAAAGG-ATAGCAGGGTCACTTCCAC 354 Query 986 TTCTTT-ATCGAAATTGT-TATCAATTTCTTTTATTTGTGTCAATGGTTGTATATGAGTG 1043 | |||| ||||||||||| | |||||||| | |||||||||||| |||||||| ||| || Sbjct 355 T-CTTTCATCGAAATTGTGT-TCAATTTCCTCTATTTGTGTCAACGGTTGTATGTGAATG 412 Query 1044 GTTTATATATCT-TGTAAAACTT-TTTATGATATAA 1077 ||| || ||| | ||||||| || |||||||||||| Sbjct 413 GTTCATGTAT-TGTGTAAAA-TTCTTTATGATATAA 446 > Ahg919615 jgi|Araly1|919615|scaffold_100896.1 Length=1090 Score = 407 bits (220), Expect = 9e-113 Identities = 469/584 (80%), Gaps = 37/584 (6%) Strand=Plus/Plus Query 405 ATTTCTTATGACGCTAACATTGTCTAAAGATGGTGAT-GTTTACTCATTACCATGGTTGG 463 ||||||| || || ||| ||||||| | ||||||||| |||| | ||||||| ||||||| Sbjct 527 ATTTCTTGTGCCGTTAAAATTGTCTGATGATGGTGATGGTTT-CCCATTACCTTGGTTGG 585 Query 464 AATATTTGC-TCTCGTCTATTGATTCTATGGGATGT-GGAGTATATGGTTCTAAAATGAA 521 ||| ||| | |||||| ||||||| |||||| | | ||| |||||||||| ||| | || Sbjct 586 AAT-TTTTCGTCTCGTGGATTGATTGTATGGG-TTTAGGATTATATGGTTCCAAAGTTAA 643 Query 522 GGTG--GCAATTTTCTTTGAGGATGATGATGTTCATTACTTTTCATGGACGGAAGCCTCT 579 |||| | | |||| ||| | ||||| |||| | |||||||| | ||| ||||||||| | Sbjct 644 GGTGATG-ACTTTT-TTTTATGATGACGATGGTGATTACTTTCCTTGGTCGGAAGCCTTT 701 Query 580 CTTTTACCGGAAGGAG---ATTGTTTTATTCAATTGAATTGTCTTTGGTATAAACCC-AA 635 |||||||| ||| ||| || | | ||||||||||| |||||||||||| ||||| || Sbjct 702 CTTTTACCAGAACGAGTTCATCGGTATATTCAATTGACTTGTCTTTGGTA-CAACCCGAA 760 Query 636 AGAAG-ACACGAGCGTGATGGGACGGAAGATGGCCT-CA-AGTGACTGTGATAGTGATGT 692 ||| | |||||||||||| || ||||||||| | | ||||| |||||| ||||||| Sbjct 761 TCAAGTA-ACGAGCGTGATGAGAAGGAAGATGG--TGAAGAGTGATTGTGATGGTGATGT 817 Query 693 TCTCTCTTTCTCTTTGTTGGAAAATTTA-ACTGCAATG-AAAGGAGAAATCA-AGATCAC 749 | |||||||| | | || |||||| | | | | | ||| |||||| |||||| | | || Sbjct 818 TTTCTCTTTCCCGTGGTCGGAAAA-TCACATTTCTATGAAAAGGA-AAATCATGGGT-AC 874 Query 750 AAATAGGCAACGATGCGTTAGGTGTTTCCAGCATATCATATTGAGTTTCAAAAGACAAGA 809 || | ||||| ||||| || ||||| || ||||| |||||||||||||||||||||| Sbjct 875 CAACCGACAACGTTGCGTAAGACGTTTCGAGTATATCGTATTGAGTTTCAAAAGACAAGA 934 Query 810 AGCAGAATCATATCAAGCAACAATTCAGGTTTTTCTTTTAACT-AAAGTAATGCGAAAAG 868 | |||||||| |||||||||| | ||| |||||||||||| | | |||||||||||||| Sbjct 935 ATTAGAATCATTTCAAGCAACACTACAGTTTTTTCTTTTAA-TCAGAGTAATGCGAAAAG 993 Query 869 CATTTTGGAGTTTCATCTATATGGTGATAGCCAATTATGAGTATGTAAAGGAGGGACGTA 928 ||||||||||||||||||||| | |||||||||| || |||||||| |||| ||| | | Sbjct 994 CATTTTGGAGTTTCATCTATAAGATGATAGCCAACTACGAGTATGTGAAGG-GGG--G-A 1049 Query 929 ACAGATTTTATCTGTTAGCCTGTAAGGCTTCCGATCGGCAAGCA 972 | | ||| |||||||||| ||||||||||||||| || ||||| Sbjct 1050 -C-G-TTT-ATCTGTTAGCATGTAAGGCTTCCGATTGGAAAGCA 1089 > Ahg948195 jgi|Araly1|948195|scaffold_800082.1 Length=665 Score = 206 bits (111), Expect = 4e-52 Identities = 149/167 (89%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 225 TGTCTTTCTTCATAGAAAGTTTGTTTCCGGTGTGCTT-GTTCATTGCCGGTGGAATTTCC 283 |||| ||||| |||||| |||||||||||||| | || | ||| ||||||||||||| || Sbjct 170 TGTCCTTCTTTATAGAAGGTTTGTTTCCGGTGCG-TTCGCTCAGTGCCGGTGGAATTACC 228 Query 284 GGCTATTAACCGGTGAATGTACTCTTACCCAATGGTATGG-AGTTTCTACATGGGTTTTT 342 || ||| || |||||| ||| ||||||||||||||||||| ||||| ||||||||||||| Sbjct 229 GGTTATCAATCGGTGATTGTCCTCTTACCCAATGGTATGGAAGTTT-TACATGGGTTTTT 287 Query 343 GATCCCGGAATCAATGGAGGAATCAATCTACTTGATGGAATCAGAAT 389 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 288 GATCCCGGAATCAATGGAGGAATCAATCTACTTGACAGAATCAGAAT 334 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40105308684 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5