BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22340.1
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326521 jgi|Araly1|326521|fgenesh1_pm.C_scaffold_6001741 571 3e-162
Ahg948196 jgi|Araly1|948196|scaffold_800083.1 416 2e-115
Ahg919615 jgi|Araly1|919615|scaffold_100896.1 407 9e-113
Ahg948195 jgi|Araly1|948195|scaffold_800082.1 206 4e-52
> Ahg326521 jgi|Araly1|326521|fgenesh1_pm.C_scaffold_6001741
Length=1131
Score = 571 bits (309), Expect = 3e-162
Identities = 571/693 (82%), Gaps = 35/693 (5%)
Strand=Plus/Plus
Query 405 ATTTCTTATGACGCTAACATTGTCTAAAGATGGTGAT-GTTTACTCATTACCATGGTTGG 463
||||||| || || ||| ||||||| | ||||||||| |||| | ||||||| |||||||
Sbjct 444 ATTTCTTGTGCCGTTAAAATTGTCTGATGATGGTGATGGTTT-CCCATTACCTTGGTTGG 502
Query 464 AATATTTGC-TCTCGTCTATTGATTCTATGGGATGT-GGAGTATATGGTTCTAAAATGAA 521
||| ||| | |||||| ||||||| |||||| | | ||| |||||||||| ||| | ||
Sbjct 503 AAT-TTTTCGTCTCGTGGATTGATTGTATGGG-TTTAGGATTATATGGTTCCAAAGTTAA 560
Query 522 GGTG--GCAATTTTCTTTGAGGATGATGATGTTCATTACTTTTCATGGACGGAAGCCTCT 579
|||| | | |||| ||| | ||||| |||| | |||||||| | ||| ||||||||| |
Sbjct 561 GGTGATG-ACTTTT-TTTTATGATGACGATGGTGATTACTTTCCTTGGTCGGAAGCCTTT 618
Query 580 CTTTTACCGGAAGGAG---ATTGTTTTATTCAATTGAATTGTCTTTGGTATAAACCC-AA 635
|||||| | ||| ||| || ||| |||||| |||| |||||||||||| ||||| ||
Sbjct 619 CTTTTATCAGAACGAGTTCATCGTTATATTCAGTTGACTTGTCTTTGGTA-CAACCCGAA 677
Query 636 AGAAG-ACACGAGCGTGATGGGACGGAAGATGGCCT-CA-AGTGACTGTGATAGTGATGT 692
||| | |||||||||||| || ||||||||| | | ||||| |||||| |||||||
Sbjct 678 TCAAGTA-ACGAGCGTGATGAGAAGGAAGATGG--TGAAGAGTGATTGTGATGGTGATGT 734
Query 693 TCTCTCTTTCTCTTTGTTGGAAAATTTA-ACTGCAATGAAA-GGAGAAATCA-AGATCAC 749
| |||||||| | | || |||||| | | | | | |||||| ||| |||||| | | ||
Sbjct 735 TTTCTCTTTCCCGTGGTCGGAAAA-TCACATTTCTATGAAATGGA-AAATCATGGGT-AC 791
Query 750 AAATAGGCAACGATGCGTTAGGTGTTTCCAGCATATCATATTGAGTTTCAAAAGACAAGA 809
|| ||||||| ||||| || ||||| || ||||| ||||||||||||||||||||||
Sbjct 792 CAACCGGCAACGTTGCGTAAGACGTTTCGAGTATATCGTATTGAGTTTCAAAAGACAAGA 851
Query 810 AGCAGAATCATATCAAGCAACAATTCAGGTTTTTCTTTTAACT-AAAGTAATGCGAAAAG 868
| |||||||| |||||||||| | ||| |||||||||||| | | ||||||||||||||
Sbjct 852 ATTAGAATCATTTCAAGCAACACTACAGTTTTTTCTTTTAA-TCAGAGTAATGCGAAAAG 910
Query 869 CATTTTGGAGTTTCATCTATATGGTGATAGCCAATTATGAGTATGTAAAGGAGGGACGTA 928
||||||||||||||||||||| | |||||||||| || |||||||| |||| ||||||||
Sbjct 911 CATTTTGGAGTTTCATCTATAAGATGATAGCCAACTACGAGTATGTGAAGGGGGGACGTA 970
Query 929 ACAGATTTTATCTGTTAGCCTGTAAGGCTTCCGATCGGCAAGCATGGTCAATTCCACTTC 988
||||||||||||||||||| ||||||||||||||| || ||||| ||||| ||| ||| |
Sbjct 971 ACAGATTTTATCTGTTAGCATGTAAGGCTTCCGATTGGAAAGCAGGGTCACTTCTACTCC 1030
Query 989 TTTATCGAAATTGT-TATCAATTTCTTTTATTTGTGTCAATGGTTGTATATGAGTGGTTT 1047
|| ||||||||||| | |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1031 TTCATCGAAATTGTGT-TCAATTTCCTTTATTTGTGTCAATGGTTGTATATGAGTGGTTC 1089
Query 1048 ATATATCTTGTAAAACT-T-TTTAT-GATATAA 1077
||||||| ||||||||| | ||||| | |||||
Sbjct 1090 ATATATCATGTAAAACTCTCTTTATTG-TATAA 1121
> Ahg948196 jgi|Araly1|948196|scaffold_800083.1
Length=467
Score = 416 bits (225), Expect = 2e-115
Identities = 383/456 (84%), Gaps = 24/456 (5%)
Strand=Plus/Plus
Query 634 AAAGAAGACACGAGCGTGATGGGACGGAAGATGGCCTCA--AGTGACTGTGATAGTGATG 691
||| ||| |||||||||||||||| ||||||||| | | |||| |||||| ||||||
Sbjct 3 AAACAAGTCACGAGCGTGATGGGAAGGAAGATGG--TGATGGGTGATTGTGATGGTGATG 60
Query 692 TTCTCTCTTTCTCTTTGTTGGAAAAT-TTAACTGCAAT-GAAAGGAGAAATCA-AGATCA 748
|||| | |||| ||| || | ||||| || || || ||||| ||||||| || | |
Sbjct 61 TTCTTTATTTCCCTTGGTCGAAAAATATT-GCTTTTATAAAAAGG-GAAATCACAGCT-A 117
Query 749 CAAATAGGCAACGATGCGTTAGGTGTTTCCAGCATATCATATTGAGTTTCAAAAGACAAG 808
| || ||||||||||||| ||| || || |||||||| |||||||||||||||||||||
Sbjct 118 CTAACCGGCAACGATGCGTAAGGCGTCTCGAGCATATCGTATTGAGTTTCAAAAGACAAG 177
Query 809 AAGCAGAATCATATCAAGCAACAATTCAGGTTT-TTCTTTTAACT-AAAGTAATGCGAAA 866
|| |||||||| ||||||||||||| | |||| ||||||||| | | ||||||||||||
Sbjct 178 AATTAGAATCATTTCAAGCAACAATT-AAGTTTCTTCTTTTAA-TCAGAGTAATGCGAAA 235
Query 867 AGCATTTTGGAGTTTCATCTATATGGTGATAGCCAATTATGAGTATGTAAAGGAGGGACG 926
|||||||||||||||||| |||| | ||||||||||| | |||||||| |||||||||||
Sbjct 236 AGCATTTTGGAGTTTCATTTATAAGATGATAGCCAATAACGAGTATGTGAAGGAGGGACG 295
Query 927 TAACAGATTTTATCTGTTAGCCTGTAAGGCTTCCGATCGGCA-AGCATGGTCAATTCCAC 985
|||||||||||||||||||||||||||||||||||| || | |||| ||||| ||||||
Sbjct 296 TAACAGATTTTATCTGTTAGCCTGTAAGGCTTCCGAAAGG-ATAGCAGGGTCACTTCCAC 354
Query 986 TTCTTT-ATCGAAATTGT-TATCAATTTCTTTTATTTGTGTCAATGGTTGTATATGAGTG 1043
| |||| ||||||||||| | |||||||| | |||||||||||| |||||||| ||| ||
Sbjct 355 T-CTTTCATCGAAATTGTGT-TCAATTTCCTCTATTTGTGTCAACGGTTGTATGTGAATG 412
Query 1044 GTTTATATATCT-TGTAAAACTT-TTTATGATATAA 1077
||| || ||| | ||||||| || ||||||||||||
Sbjct 413 GTTCATGTAT-TGTGTAAAA-TTCTTTATGATATAA 446
> Ahg919615 jgi|Araly1|919615|scaffold_100896.1
Length=1090
Score = 407 bits (220), Expect = 9e-113
Identities = 469/584 (80%), Gaps = 37/584 (6%)
Strand=Plus/Plus
Query 405 ATTTCTTATGACGCTAACATTGTCTAAAGATGGTGAT-GTTTACTCATTACCATGGTTGG 463
||||||| || || ||| ||||||| | ||||||||| |||| | ||||||| |||||||
Sbjct 527 ATTTCTTGTGCCGTTAAAATTGTCTGATGATGGTGATGGTTT-CCCATTACCTTGGTTGG 585
Query 464 AATATTTGC-TCTCGTCTATTGATTCTATGGGATGT-GGAGTATATGGTTCTAAAATGAA 521
||| ||| | |||||| ||||||| |||||| | | ||| |||||||||| ||| | ||
Sbjct 586 AAT-TTTTCGTCTCGTGGATTGATTGTATGGG-TTTAGGATTATATGGTTCCAAAGTTAA 643
Query 522 GGTG--GCAATTTTCTTTGAGGATGATGATGTTCATTACTTTTCATGGACGGAAGCCTCT 579
|||| | | |||| ||| | ||||| |||| | |||||||| | ||| ||||||||| |
Sbjct 644 GGTGATG-ACTTTT-TTTTATGATGACGATGGTGATTACTTTCCTTGGTCGGAAGCCTTT 701
Query 580 CTTTTACCGGAAGGAG---ATTGTTTTATTCAATTGAATTGTCTTTGGTATAAACCC-AA 635
|||||||| ||| ||| || | | ||||||||||| |||||||||||| ||||| ||
Sbjct 702 CTTTTACCAGAACGAGTTCATCGGTATATTCAATTGACTTGTCTTTGGTA-CAACCCGAA 760
Query 636 AGAAG-ACACGAGCGTGATGGGACGGAAGATGGCCT-CA-AGTGACTGTGATAGTGATGT 692
||| | |||||||||||| || ||||||||| | | ||||| |||||| |||||||
Sbjct 761 TCAAGTA-ACGAGCGTGATGAGAAGGAAGATGG--TGAAGAGTGATTGTGATGGTGATGT 817
Query 693 TCTCTCTTTCTCTTTGTTGGAAAATTTA-ACTGCAATG-AAAGGAGAAATCA-AGATCAC 749
| |||||||| | | || |||||| | | | | | ||| |||||| |||||| | | ||
Sbjct 818 TTTCTCTTTCCCGTGGTCGGAAAA-TCACATTTCTATGAAAAGGA-AAATCATGGGT-AC 874
Query 750 AAATAGGCAACGATGCGTTAGGTGTTTCCAGCATATCATATTGAGTTTCAAAAGACAAGA 809
|| | ||||| ||||| || ||||| || ||||| ||||||||||||||||||||||
Sbjct 875 CAACCGACAACGTTGCGTAAGACGTTTCGAGTATATCGTATTGAGTTTCAAAAGACAAGA 934
Query 810 AGCAGAATCATATCAAGCAACAATTCAGGTTTTTCTTTTAACT-AAAGTAATGCGAAAAG 868
| |||||||| |||||||||| | ||| |||||||||||| | | ||||||||||||||
Sbjct 935 ATTAGAATCATTTCAAGCAACACTACAGTTTTTTCTTTTAA-TCAGAGTAATGCGAAAAG 993
Query 869 CATTTTGGAGTTTCATCTATATGGTGATAGCCAATTATGAGTATGTAAAGGAGGGACGTA 928
||||||||||||||||||||| | |||||||||| || |||||||| |||| ||| | |
Sbjct 994 CATTTTGGAGTTTCATCTATAAGATGATAGCCAACTACGAGTATGTGAAGG-GGG--G-A 1049
Query 929 ACAGATTTTATCTGTTAGCCTGTAAGGCTTCCGATCGGCAAGCA 972
| | ||| |||||||||| ||||||||||||||| || |||||
Sbjct 1050 -C-G-TTT-ATCTGTTAGCATGTAAGGCTTCCGATTGGAAAGCA 1089
> Ahg948195 jgi|Araly1|948195|scaffold_800082.1
Length=665
Score = 206 bits (111), Expect = 4e-52
Identities = 149/167 (89%), Gaps = 4/167 (2%)
Strand=Plus/Plus
Query 225 TGTCTTTCTTCATAGAAAGTTTGTTTCCGGTGTGCTT-GTTCATTGCCGGTGGAATTTCC 283
|||| ||||| |||||| |||||||||||||| | || | ||| ||||||||||||| ||
Sbjct 170 TGTCCTTCTTTATAGAAGGTTTGTTTCCGGTGCG-TTCGCTCAGTGCCGGTGGAATTACC 228
Query 284 GGCTATTAACCGGTGAATGTACTCTTACCCAATGGTATGG-AGTTTCTACATGGGTTTTT 342
|| ||| || |||||| ||| ||||||||||||||||||| ||||| |||||||||||||
Sbjct 229 GGTTATCAATCGGTGATTGTCCTCTTACCCAATGGTATGGAAGTTT-TACATGGGTTTTT 287
Query 343 GATCCCGGAATCAATGGAGGAATCAATCTACTTGATGGAATCAGAAT 389
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 288 GATCCCGGAATCAATGGAGGAATCAATCTACTTGACAGAATCAGAAT 334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40105308684
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5