BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22370.1
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320077 jgi|Araly1|320077|fgenesh1_pm.C_scaffold_4000134 1031 0.0
> Ahg320077 jgi|Araly1|320077|fgenesh1_pm.C_scaffold_4000134
Length=660
Score = 1031 bits (558), Expect = 0.0
Identities = 626/660 (95%), Gaps = 0/660 (0%)
Strand=Plus/Plus
Query 113 ATGTCAATGGAGTGTGTGGTTCAAGGAATCATCGAGACACAGCATGTTGAAGCTCTTGAG 172
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1 ATGTCAATGGAGTGTGTGGTTCAAGGAATCATTGAGACACAGCATGTTGAAGCGCTTGAG 60
Query 173 ATTCTTCTTCAAGGTCTTTGTGGTGTTCAACGCGAACGTTTAAGAGTTCATGAGTTATGC 232
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 61 ATTCTTCTTCAAGGTCTTTGTGGTGTTAAACGCGAACGTTTGAGAGTTCATGAGTTATGT 120
Query 233 TTAAGAAGCGGCCCAAATCTTGGAGTTGTGTCATCAGAAGTTAGGCTATTATGTGATCTT 292
|||| ||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 121 TTAAAAAGTGGCCCAAATCTTGGTGTTGTGTCTTCAGAAGTTAGGCTTTTATGTGATCTT 180
Query 293 GATCAACCCGAACCCACATGGACGGTTAAACATGTTGGTGGTGCGATGAGAGGTGCAGGA 352
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 GATCAACCAGAACCCACATGGACGGTTAAACATGTTGGTGGTCCGATGAGAGGTGCAGGA 240
Query 353 GCTGATCAAATCTCTGTTTTGGTTAGAAATATGATTGAAAGTAAAGTAAGCAAGAATGCT 412
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 241 GCTGATCAAATCTCTGTTATGGTTAGAACTATGATTGAAAGTAAAGTAAGCAAGAATGCT 300
Query 413 TTGCGTATGTTCTATGCACTCGGTTACAAACTAGACCATGAGCTTCTCAAAGTCGGATTC 472
|||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||
Sbjct 301 TTGCGTATGTTCTATGCACTCGGTTACAAATTAGACCATGAACTTCTTAAAGTCGGATTC 360
Query 473 GCCTTTCATTTCCAACGGACTGCGCACATAAGTGTTTCTGTATCTTCTGTTAATAAGATG 532
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 361 GCCTTTCATTTCCAACGGACTGCGCACATTAGTGTTTCTGTATCTTCGGTTAATAAGATG 420
Query 533 CCTAAAGTTCATGCTATAGATGAGGCTGTTCCTGTAACACCTGGTATGCAGATTGTTGAT 592
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 421 CCTAAAGTTCATGCTATAGATGAGGCAGTTCCTGTAACACCTGGGATGCAGATTGTTGAT 480
Query 593 GTAACTGCTCCTGCAACTTCTGAGAATTACAGTGAAGTCGCTGCTGCTGTTTCATCTTTC 652
|| || ||||| ||||| ||||||||||||| |||||||||||||| ||||||||||||
Sbjct 481 GTTACAGCTCCAGCAACACCTGAGAATTACAGCGAAGTCGCTGCTGCGGTTTCATCTTTC 540
Query 653 TGTGAATTTCTTGCTCCGCTTGTTCACTTGTCGAAACCGTCTATCTCCACGGGGGTTGTG 712
||||||||||| || ||||||||||||||||||||||||| ||| ||||| |||||||||
Sbjct 541 TGTGAATTTCTCGCCCCGCTTGTTCACTTGTCGAAACCGTTTATTTCCACTGGGGTTGTG 600
Query 713 CCAACCGCTGCTGCGGCGGCTGCATCTCTTATGTCGGATGGAGGAGGTACTACATTGTAA 772
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CCAACCGCTGCTGCGGCTGCTGCATCTCTTATGTCGGATGGAGGAGGTACTACATTGTAA 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36254894067
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5