BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22400.1
Length=2678
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320078 jgi|Araly1|320078|fgenesh1_pm.C_scaffold_4000135 2425 0.0
> Ahg320078 jgi|Araly1|320078|fgenesh1_pm.C_scaffold_4000135
Length=2517
Score = 2425 bits (1313), Expect = 0.0
Identities = 1419/1472 (96%), Gaps = 0/1472 (0%)
Strand=Plus/Plus
Query 88 ATGGGAAGAGGAGGAAGACATAGAGGTCGTACTCAGAGAAAAGATTTCAAAGAAAGCAGA 147
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGAGGAGGAAGACATAGAGGTCGTTCTCAGAGAAAAGATTTCAAAGAAAGCAGA 60
Query 148 GAGAATGTTTGGAAACGACCCAAATCCGATGCTTCCGTTGATGGTTCCGACAACGCCGTA 207
||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||
Sbjct 61 GAGAATGTTTGGAAACGTCCCAAATCCGAAGCTTCCGTTGATGGTTCCGATAACGCCGTA 120
Query 208 CCGGAACAAAAACCCACTTGGGAACCTATTGTCACTGTTAACCCTAACTTCGAGGAATAT 267
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 CCGGAACAAAAACCTACTTGGGAACCTATTGTCACTGTTAACCCTAATTTCGAGGAATAT 180
Query 268 TACAAGAAACAAGGGATAGTGAAAGCTGAAGAGTGGGATTTGTTCATGGAGATTCTTCGT 327
|||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 181 TACAAGGAACAAGGGATAGTGAAAGCACAAGAGTGGGATTTGTTTATGGAGATTCTTCGT 240
Query 328 AAGCCTTTACCTGCTGCGTTTAGGGTTAACTCCAATGGCCAATTTTGCGATGAGATTATA 387
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 241 AAGCCTTTACCTGCTGCGTTTAGGGTTAATTCAAATGGCCAATTTTGCGATGAGATTATA 300
Query 388 TCGATCTTGGAGAATGACTTTATGAAATCACTTCAGGCTGAGGCCATAGAAGGTGGTGAA 447
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 TCGATATTGGAGAATGACTTTATGAAATCACTTCAGGCTGAGGCTATAGAAGGTGGTGAA 360
Query 448 TTGGAGGCTATTAAGCCCTTGCCTTGGTATCCAAAGAATCTCGCTTGGCATTCTAATTTT 507
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 TTGGAGGCTATTAAGCCCTTGCCTTGGTATCCGAAGAATCTCGCTTGGCATTCTAATTTT 420
Query 508 TCTCGAAAGGAGATAAGAAAAAATCAGACACTTGAGAGGTTTCATGAGTTTCTGAAGTTA 567
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 421 TCTCGAAAGGAGATTAGAAAAAATCAGACACTTGAGAGGTTTCATGAATTTCTGAAATTA 480
Query 568 GAAAATGAAGTTGGAAATATTACTAGGCAGGAAGCTGTTAGCATGGTACCTCCTCTCTTC 627
||||||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 481 GAAAATGAAGTTGGAAACATAACCCGGCAGGAAGCTGTTAGCATGGTACCTCCTCTCTTC 540
Query 628 CTAGACGTACATCCAGATCATTTCGTACTTGACATGTGTGCTGCACCGGGTTCCAAAACA 687
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 541 CTAGACGTACATCCAGATCATTTTGTACTTGACATGTGTGCTGCACCGGGTTCCAAAACA 600
Query 688 TTTCAGCTGCTTGAGATTATACATGAAGCATCAGAACCAGGATCTCTTCCTAATGGATTG 747
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 TTTCAGCTGCTTGAGATTATACATGAAGCATCAGAACCAGGATCTCTACCTAATGGATTG 660
Query 748 GTGGTGGCTAATGATGTTGATTTTAAAAGATCTAACCTTCTCATTCACCAAACAAAGAGA 807
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 GTGGTGGCTAATGATGTTGATTTTAAAAGATCTAACCTTCTCATTCACCAAACTAAGAGA 720
Query 808 ATGTGCACATCCAACTTGATAGTGACAAATCATGAAGGGCAACAGTTTCCTGGTTGCCGT 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 ATGTGCACATCCAACTTGATAGTGACAAATCATGAAGGGCAACAGTTTCCTGGTTGCCGT 780
Query 868 TTGAACAAATCCCGAGCTTCTGAGAAAGGAATAAGTGAAAATATGCCTATTAATCAACTT 927
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 781 TTGAACAAATCCCGAGCTTCCGAGAAAGGAATAAGTGAAAATATGCCCATTAATCAACTT 840
Query 928 GCCTTTGACCGTGTTCTATGCGATGTTCCGTGCAGTGGTGATGGTACACTGCGCAAGGCT 987
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 841 GCCTTTGACCGTGTTCTATGTGATGTTCCGTGCAGTGGTGATGGTACACTGCGCAAGGCT 900
Query 988 CCAGATATCTGGCGCAAATGGAACTCTGGTATGGGCAATGGACTTCATAGCCTTCAGATT 1047
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 901 CCAGACATCTGGCGGAAATGGAACTCTGGAATGGGCAATGGACTTCATAGCCTTCAGATT 960
Query 1048 ATTCTTGCTATGAGAGGTTTATCTCTGTTGAAAGTTGGTGGGAAGATGATATACTCAACC 1107
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 961 ATTCTTGCTATGAGAGGTTTATCTCTGTTGAAAATTGGTGGGAAGATGATATACTCAACC 1020
Query 1108 TGCTCAATGAACCCAGTGGAGGATGAAGCTGTTGTTGCTGAGATTCTAAGGAGGTGTGGA 1167
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1021 TGCTCAATGAACCCAGTGGAGGACGAAGCTGTTGTTGCTGAGATTCTAAGGAGGTGTGGA 1080
Query 1168 GACTCTGTTGAACTTTTAGATGTTTCCGATAAGCTTCCTGAACTTATACGAAGACCAGGA 1227
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GACTCTGTTGAACTTTTAGATGTTTCCGATAAGCTTCCTGAACTTATACGAAGACCAGGT 1140
Query 1228 CTTAAGGCATGGAAGGTGCGTGATAAAGGTGGGTGGTTTACTTCTTACAAAGATGTTCCA 1287
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1141 CTTAAGAAATGGAAGGTGCGTGATAAAGGTGGGTGGTTTACTTCTTACAAAGATGTCCCA 1200
Query 1288 CAAAACCGGAGAGGTGGAGTTCTTGTGAGCATGTTTCCTTCTGGGAAATACCTCAAGGAC 1347
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1201 CAAAACCGGAGAGGGGGAGTTCTTGTGAGCATGTTTCCTTCTGGGAAAAACCTCAAGGAC 1260
Query 1348 TCAACTGAAACCACGGAAAAGAACGAGAATGGTGATGTTAATGGCTGTGAGGATGGACTC 1407
||||||||||||||| | ||||| ||||| ||||||||||| |||||||| |||||||||
Sbjct 1261 TCAACTGAAACCACGCAGAAGAATGAGAACGGTGATGTTAACGGCTGTGAAGATGGACTC 1320
Query 1408 AAAGAAACAGATATTTCTGTGGTGGATGCTACTCCTGAAGAACAAGCTGAGGAAGTCTCT 1467
|||||| ||||| || |||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1321 AAAGAAGCAGATGTTCCTGTGGTGGATGCTACTCCTGATGAACAAGCCGAGGAAGTCTCT 1380
Query 1468 GATCTTCCACTTGAACGTTGCATGAGGATAATACCTCATGATCAGAACACCGGAGCCTTC 1527
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1381 GATCTTCCACTTGAACGTTGCATGAGGATAATGCCTCATGATCAGAACACCGGAGCCTTC 1440
Query 1528 TTCATTGCGGTCCTTCaaaaaaaaTCTCCCTT 1559
|||||||||||||||||||||| ||||||||
Sbjct 1441 TTCATTGCGGTCCTTCAAAAAATTTCTCCCTT 1472
Score = 1271 bits (688), Expect = 0.0
Identities = 732/754 (97%), Gaps = 0/754 (0%)
Strand=Plus/Plus
Query 1562 CAGAATTTCAGGAGAAACCAAATACGAAAAGGAACTCAACTGCTAAGTCTACTGACTCGA 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1529 CAGAATTTCAGGAGAAACCAAATACGAAAAGGAACTCAACTGCTAAGTCTACTGACTCGA 1588
Query 1622 CAGAAAAGTCTCCGAGTAAAGAATCTGTTGTTACAGTGGATGCTGGTGTACCAGATGAGA 1681
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1589 CAGAAAAGTCTCTGAGTAAAGAATCTGTTGTTACAGTGGATGCTGCTGTACCAGATGAGA 1648
Query 1682 GTGCAGTGGAGAAAGTTATTGAAGCAGATTCAAACATTGAGAAAAATGATAGCTTGGAGC 1741
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1649 GTGCAGTGGAAAAAGTTATTGAAGCAGATTCAAACAATGAGAAAAATGATAGCTTGGAGC 1708
Query 1742 CTGAGAAGAAAATCACAGAAGGAGAAAGCATCACGGAAGATAAAGAGGCCAATTCGAGTA 1801
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1709 CTGAGAAGAAAATCACAGAAGAAGAAAGCATCACGGAAGATAAAGAAGCCAATTCGAGTA 1768
Query 1802 ATGCGGGAGGCAAGAGAAAAGTACCGATGCAAGGGAAGTGGAAAGGCTTTGACCCAGTTG 1861
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1769 ATGCGGGAGGCAAGAGAAAAGTACCAATGCAAGGGAAGTGGAAAGGCTTTGACCCTGTTG 1828
Query 1862 TTTTCGTGAAAGATGAAACAGTAATCAATGGCATCAAGGAATTCTACGGTATCAAAGATG 1921
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1829 TTTTCGTGAAAGATGAAAAAGTAATCAATGGCATCAAGGAATTCTACGGTATCAAAGATG 1888
Query 1922 AATCATTTCCATTACATGGTCATCTCGTGGCAAGAAACACCGACACAAGCAGCGTTAAGA 1981
||||||||||||| ||||||||||| ||||||||||||| |||||||||||||| ||||
Sbjct 1889 AATCATTTCCATTGCATGGTCATCTTGTGGCAAGAAACAATGACACAAGCAGCGTCAAGA 1948
Query 1982 GGATTTACTATGTTTCAAAATCAGTTAAGGAAGTTCTTCAGTTGAATTTTGCAGTCGGGC 2041
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1949 GGATTTACTATGTTTCAAAATCGGTTAAGGAAGTTCTTCAGTTGAATTTTGCAGTCGGGC 2008
Query 2042 AGCAGCTTAAGATCGCTTCTGTTGGCCTCAAAATGTTTGAGAGACAATCGGCAAAAGAAG 2101
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2009 AGCAGCTTAAGATCGCTTCTGTTGGCCTCAAGATGTTTGAGAGACAATCGGCAAAAGAAG 2068
Query 2102 GTTCAAGCACGCTGTGCCCATTCCGTATATCATCCGAGGGACTACCTGTGATTCTTCCAT 2161
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2069 GTTCAAGCACACTGTGCCCATTCCGTATATCATCCGAGGGACTACCTGTGATCCTTCCAT 2128
Query 2162 ACATTACCAAACAAGTACTTTATACTCCAATGGCAGACTTCAAACTTCTCCTGCAAGACA 2221
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2129 ACATTACCAAACAAGTACTTTATACTCCAATGGCAGACTTCAAACTTCTTCTGCAAGACA 2188
Query 2222 AATCAATCAAGTTTCACGATTTTGTCAATCCACAGTTGGCCCAGAAAGCAACTGACCTTG 2281
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2189 AATCAATCAAGTTTCTGGATTTCGTCAATCCACAGTTGGCCCAGAAAGCAACTGACCTTG 2248
Query 2282 TTATGGGAAGCTGCGTGGTGATTCTCAGCGATGG 2315
||||||||||||||||||||||||||||||||||
Sbjct 2249 TTATGGGAAGCTGCGTGGTGATTCTCAGCGATGG 2282
Score = 303 bits (164), Expect = 3e-81
Identities = 186/197 (94%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 2314 GGTGAAGTACCGGTGAAAGCGGATGCATCAACAATTGCCATCAGTTGCTGGAGAGGGAAG 2373
||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 2314 GGTGAAGAACCGGTGAAAGTGGATGCGTCAACAATTGCCATCAGTTGCTGGAGAGGGAAG 2373
Query 2374 GCTAGTTTGGCTGTTATGGCCACTGTCGCAGATTGCCAGGAGCTGCTAGAGAGATTTGCC 2433
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2374 GCTAGTTTGGCTGTTATGGCCACTGCCGCAGATTGCCAGGAGCTGCTAGAGAGATTTGCC 2433
Query 2434 GAGAAAACACCAAAAACAGAAGGTGGTTCGGTAAATGGAAGCAACGGCGATTCGGACGGT 2493
||||||||||||||||| ||||||||||| |||||||||||||| ||||||| || ||||
Sbjct 2434 GAGAAAACACCAAAAACGGAAGGTGGTTCAGTAAATGGAAGCAATGGCGATTTGGGCGGT 2493
Query 2494 CCACTAGCTATGGAGAC 2510
|| | ||||||||||||
Sbjct 2494 CCTCAAGCTATGGAGAC 2510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101015329740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5