BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22420.1
Length=1163
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481103 jgi|Araly1|481103|fgenesh2_kg.4__163__AT2G22420.1 1808 0.0
> Ahg481103 jgi|Araly1|481103|fgenesh2_kg.4__163__AT2G22420.1
Length=1128
Score = 1808 bits (979), Expect = 0.0
Identities = 1066/1107 (96%), Gaps = 9/1107 (1%)
Strand=Plus/Plus
Query 14 GCCTTTAGTATCATTCTCGAAAACCACCAAAAACCTCTTTA-TAACCCAACAAACAAAGT 72
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1 GCCTTTAGTATCATTCTCGAAAACCACCAAAAACCTCTTTATTAA-CCAACAAACAAAGT 59
Query 73 CTCTACTTCTTCTTCAATCACTGAAACACAACACC----aa-aaaagaaaaaaGTATGTC 127
|||| |||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 60 CTCTTCTTCTTCTTCAATCACTGAAACACAACACCAAAAAAGAAAAGAAAAAAGTATGTC 119
Query 128 TCTTCTTCCCCATCTCATCCTCTACCTAACACTTTTGACGGTGGTTGTTACTGGAGAAAC 187
||||||||||||||||||||||||||||||||| || ||||||| |||||| ||||||||
Sbjct 120 TCTTCTTCCCCATCTCATCCTCTACCTAACACTCTTCACGGTGGCTGTTACCGGAGAAAC 179
Query 188 TCTCCGACCAAGATTCTACAGCGAGACATGCCCTGAAGCTGAATCCATAGTAAGAAGAGA 247
|||||| |||||||||||||| || ||||||||||||||||||||||||||||||| |||
Sbjct 180 TCTCCGGCCAAGATTCTACAGAGAAACATGCCCTGAAGCTGAATCCATAGTAAGAAAAGA 239
Query 248 AATGAAGAAAGCAATGATCAAAGAAGCAAGAAGCGTCGCTTCCGTCATGCGTTTCCAATT 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AATGAAGAAAGCAATGATCAAAGAAGCAAGAAGCGTCGCTTCCGTCATGCGTTTCCAATT 299
Query 308 TCACGACTGTTTCGTCAATGGATGTGACGCATCTCTGTTGCTTGACGACACACCAAACAT 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCACGACTGTTTCGTCAATGGATGTGACGCATCTCTGTTGCTTGACGACACACCAAACAT 359
Query 368 GCTTGGTGAAAAACTATCACTTTCCAACATCGATTCACTAAGATCTTTCGAAGTCGTTGA 427
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 360 GCTTGGTGAGAAACTATCACTTTCCAACATCGATTCTTTAAGATCTTTCGAAGTCGTTGA 419
Query 428 CGACATTAAAGAAGCTCTAGAGAAAGCTTGTCCAGCTACTGTTTCTTGTGCCGATATCGT 487
|||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 420 CGACATCAAAGAAGCTTTAGAGAAAGCTTGTCCTGCTACTGTTTCTTGTGCCGATATCGT 479
Query 488 TATCATGGCCGCTCGTGACGCCGTTGCTCTTACAGGAGGACCAGATTGGGAAGTGAAGCT 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TATCATGGCCGCTCGTGACGCCGTTGCTCTTACAGGAGGACCAGATTGGGAAGTGAAGCT 539
Query 548 AGGGAGGAAAGACAGTTTAACAGCGAGTCAGCAAGATTCCGACGATATAATGCCAAGTCC 607
||| |||| ||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 540 AGGAAGGAGAGACAGTTTAACAGCGAGTCAAAAAGATTCCGACGATGTAATGCCAAGTCC 599
Query 608 AAGAGCCAACGCAACTTTCTTGATTGATCTCTTCGAAAGATTCAATCTTTCTGTAAAAGA 667
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 AAGAGCCAACGCAACTTTCTTGATTGATCTCTTCGAAAGATTCAATCTTTCTGTGAAAGA 659
Query 668 CATGGTTGCTTTATCAGGGTCACACTCAATAGGTCAAGGTCGGTGTTTTTCAATCATGTT 727
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 CATGGTGGCTTTATCAGGGTCACACTCAATTGGTCAAGGTCGGTGTTTTTCAATCATGTT 719
Query 728 CAGACTTTATAACCAATCCGGTTCTGGTAAACCGGATCCAGCTCTTGAACCGAGTTACCG 787
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 720 TAGGCTTTATAACCAATCCGGTTCTGGTAAACCGGATCCAGCTCTCGAACCGAGTTACCG 779
Query 788 TAAGAAGCTTGATAAGCTTTGTCCTTTGGGTGGAGATGAGAATGTGACTGGAGATCTAGA 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TAAGAAGCTTGATAAGCTTTGTCCTTTGGGTGGAGATGAGAATGTGACTGGAGATCTAGA 839
Query 848 TGCAACACCTCAGGTTTTTGATAATCAGTA-TTTCAAAGACTTGGTTTCAGGGAGAGGGT 906
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 840 TGCAACACCTCAGGTTTTTGATAATCAGTACTTT-AAAGACTTGGTTTCAGGGAGAGGGT 898
Query 907 TTCTTAACTCTGATCAGACTTTGTACACGAATCTAGTGACGAGAGAGTATGTGAAGATGT 966
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 899 TTCTTAACTCTGATCAGACTTTGTACACGAATCGAGTGACGAGAGAGTATGTGAAGATGT 958
Query 967 TTAGTGAGGATCAAGATGAGTTCTTTAGGGCTTTTGCAGAAGGCATGGTGAAGTTGGGTG 1026
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 959 TTAGTGAGGATCAAGATGAGTTCTTTAGGGCTTTTGAAGAAGGGATGGTGAAGTTGGGTG 1018
Query 1027 ATTTGCAATCTGGGAGACCTGGTGAGATTAGGTTTAATTGTAGAGTTGTTAATAGAAGGC 1086
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1019 ATTTGCAATCTGGAAGACCTGGTGAGATTAGGTTTAATTGTAGGGTTGTTAATAGAAGGC 1078
Query 1087 CTATTGATGTATTGCTTGTATCTTGAA 1113
|||||||||||||||||| ||||||||
Sbjct 1079 CTATTGATGTATTGCTTGAATCTTGAA 1105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43383879546
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5