BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G22425.1

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg481104 jgi|Araly1|481104|fgenesh2_kg.4__164__AT2G22425.2          529    9e-150


> Ahg481104 jgi|Araly1|481104|fgenesh2_kg.4__164__AT2G22425.2
Length=352

 Score =  529 bits (286),  Expect = 9e-150
 Identities = 335/357 (94%), Gaps = 9/357 (3%)
 Strand=Plus/Plus

Query  4    ATTGTTGAAAATCAGG--TTT-ACAGATTCAGTGAGAGATCAGATCGCTAAAGAAGAAAA  60
            ||||||||||||||||  ||| | ||||||||||||||||||||||||| || ||| |||
Sbjct  1    ATTGTTGAAAATCAGGTTTTTGA-AGATTCAGTGAGAGATCAGATCGCT-AA-AAG-AAA  56

Query  61   TGGATTGGCAAGGACAGAAACTGGTGGAGCAGCTGATGCAGATCTTACTGGTGATCTCCG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  57   TGGATTGGCAAGGACAGAAACTGGTGGAGCAGCTGATGCAGATCTTACTTGTGATCTCCG  116

Query  121  GCGTTGTAGCGGTGGTTGTTGGCTACACAACGGAATCGTTCAGGACGATGATGCTGATCT  180
            |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  117  GCGTCGTCGCGGTGGTTGTTGGCTACACAACGGAATCGTTCAGGACGATGATGCTGATCT  176

Query  181  ATGCCGGTGGTGTTGTTCTCACGACTTTGGTTACTGTACCTAATTGGCCTTTCTACAATC  240
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  177  ACGCCGGTGGTGTTGTTCTCACGACTTTGGTTACTGTACCTAATTGGCCTTTCTACAATC  236

Query  241  TTCATCCTCTCAAATGGTTAGATCCGAGCGAAGCCGAGAAGCATCCCAAACCAGAAGTTG  300
            |||||||||||||||||||||||||||| || ||||| ||| |||| |||||||||||||
Sbjct  237  TTCATCCTCTCAAATGGTTAGATCCGAGTGAGGCCGACAAGTATCCTAAACCAGAAGTTG  296

Query  301  TCAG-TGTTGCTTCGAAGAAGAAATTCTCTAAGAAATAGGTCTGATTCTGAAtctct  356
            |  | |||||||||||||||||||||||||||||||||||||||| |||  ||||||
Sbjct  297  TT-GCTGTTGCTTCGAAGAAGAAATTCTCTAAGAAATAGGTCTGAATCTCTATCTCT  352



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18772549788


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5