BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22450.1
Length=1761
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932206 jgi|Araly1|932206|scaffold_400194.1 2407 0.0
Ahg496632 jgi|Araly1|496632|fgenesh2_kg.8__2448__AT5G64300.1 392 4e-108
> Ahg932206 jgi|Araly1|932206|scaffold_400194.1
Length=1468
Score = 2407 bits (1303), Expect = 0.0
Identities = 1412/1464 (96%), Gaps = 9/1464 (1%)
Strand=Plus/Plus
Query 88 TCTTCAAAACTCCGGTGAAAATGGCGTCGCTTACTCTCCGGTGCGATTCGACGCATCTTT 147
|||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 2 TCTT-AAAACTCCGGTGAAAATGGCGTCTCTTACTCTCCGGTGCGACTCGACGCATCTTT 60
Query 148 TGCCTTCCCGTGATGTTGTCAAGGGAACAAAACCATTTGGAACGAGCTTGGTGTATCCTA 207
| ||||| |||||||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct 61 TTCCTTCGCGTGATGTTGTCAAGGGAACAAAACCATTTAGAACGAGCTTGGTGTGTACTA 120
Query 208 GGATCATATCGAAGAAGTTTAATGTTAGAATGAGAGTGATACCTGAGGAAGGAGATGTGT 267
|||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GGATTATATCGAAGAGGTTTAATGTTAGAATGAGAGTGATATCTGAGGAAGGAGATGTGT 180
Query 268 TCTCTTCTTCTAAGAGTAATGGATCATCAATGGGGATTGAGTTACAGCCAGATTTGGTTT 327
||||||| ||||||||||||||||||||||||||||||||||| || || |||||||| |
Sbjct 181 TCTCTTCCTCTAAGAGTAATGGATCATCAATGGGGATTGAGTTGCAACCGGATTTGGTAT 240
Query 328 CGTTTGGAACATTAGCAGCTGAAATGATTCCTACAACAATGGATTCTCCTGAAGTTGAGG 387
||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||
Sbjct 241 CGTTTGGAACATTAGCAGCTGAAATGATTCCCACAACAATGGATTCTTCTGATGTTGAGG 300
Query 388 ATGAAGAGTTTGATTTAGATCGACCTACTGATGGATTTGCGTCTATTCCTCAAGCTATTG 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGAAGAGTTTGATTTAGATCGACCTACTGATGGATTTGCGTCTATTCCTCAAGCTATTG 360
Query 448 AAGATATTCGACAT-GGCAAGATGGTAGTTGTTGTAGATGATGAAGATAGAGAAAACGAA 506
| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGGATATTCGAC-TGGGCAAGATGGTAGTTGTTGTAGATGATGAAGATAGAGAAAACGAA 419
Query 507 GGAGATTTGATAATGGCGGCATCTTTGGCT-ACACCTGAAGCTATGGCTTTTGTTGTAAA 565
||||||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||
Sbjct 420 GGAGATTTGATAATGGCTGCATCGTTGG-TAACACCTGAAGCTATGGCTTTTGTTGTAAA 478
Query 566 GCATGGGACTGGAATCGTGTGTGTGAGCATGAAAGGCGAAGACTTGGAGAGGTTAGAGCT 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GCATGGGACTGGAATCGTGTGTGTGAGCATGAAAGGCGAAGACTTGGAGAGGTTAGAGCT 538
Query 626 TCCTTTAATGGTAACGCGTAAGGATAACGAGGAAAAACTCCGCACGGCCTTCACGGTTTC 685
|||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||
Sbjct 539 TCCTTTAATGGTGACGCGAAAGGGTAACGAGGAAAAACTCCACACGGCCTTCACGGTTTC 598
Query 686 AGTGGACGCAAAAAAGGGAACATCCACAGGTGTCTCAGCTCGTGATAGGGCGCAAACAAT 745
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGTGGACGCGAAAAAGGGAACATCCACAGGTGTCTCAGCTCGTGATAGGGCGCAAACAAT 658
Query 746 ATTAACCCTTGCATCAAAAGATTCAAAACCTGAAGATTTCAATCGTCCTGGTCATATTTT 805
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 659 ATTAACCCTTGCATCAAAAGATTCAAAACCTCAAGATTTCAATCGTCCTGGTCATATTTT 718
Query 806 TCCTTTGAGATACAGAGAAGGTGGTGTTCTTAAAAGAGCAGGGCATACAGAAGCCTCTGT 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TCCTTTGAGATACAGAGAAGGTGGTGTTCTTAAAAGAGCAGGGCATACAGAAGCCTCTGT 778
Query 866 TGACTTGACTGTGTTGGCCGGTTTAGAACCAGTATCTGTTTTATGTGAGATTGTAGATGA 925
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 779 TGACTTGACTGTGTTGGCCGGTTTAGAACCAGTATCGGTTTTATGTGAGATTGTAGATGA 838
Query 926 TGATGGTTCCATGGCTAGATTACCAAGACTCCGCCAATTCGCTCAAGAGAACAACTTGAA 985
|||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||
Sbjct 839 TGATGGTTCCATGGCTAGATTACCAAGACTTCGCCAATTCGCTAAAGAGAACGACTTGAA 898
Query 986 ATTAATTTCAATCGCTGATTTAATCAGATACCGAAGGAAAAGAGAGAGACTGGTTGAGTT 1045
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AATAATTTCAATCGCTGATTTAATCAGATACCGAAGGAAAAGAGAGAGACTGGTTGAGTT 958
Query 1046 TACTGCGGTTGCGCCTATACCGACAATGTGGGGACCATTCAAAGCACATTGCTTTAAGTC 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TACTGCGGTTGCGCCTATACCGACAATGTGGGGACCATTCAAAGCACATTGCTTTAAGTC 1018
Query 1106 ATTACTTGATGGAGTTGAGCACATTGCAATGGTCAAGGGAGAAATCGGAGATGGGAAGGA 1165
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1019 ATTACTTGATGGAGTTGAGCACATTGCAATGGTCAAGGGGGAAATCGGAGATGGGAAGGA 1078
Query 1166 TATTCTCGTGAGAGTACACGCGGAGTGTATCACAGATGATATATTCGGAAATAGCTCTGG 1225
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 1079 TATTCTCGTGAGAGTACACGCAGAGTGTATCACGGATGATATATTCGGAAATAGCTCGGG 1138
Query 1226 TGGAAAACAGTTAGCGATTGCAATGAGACTGATTGAAGAAAATGGGAGAGGTGTTTTTGT 1285
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1139 TGGAAAACAGTTAGCGATTGCAATGAGACTGATTGAAGAAACTGGGAGAGGTGTTTTTGT 1198
Query 1286 CTACTTACGTGGTCCTGAAAGTAAAGGCATTGATCTAAGCCACAAGCCTCGTACTTACAA 1345
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1199 CTACTTACGTGGTCCTGAAAGTAAAGGCATTGACCTAAGCCATAAGCCTCGTACTTACAA 1258
Query 1346 CACCAATTCAGATCAAGCCGAGGGTGTTTCATTTCCCGTTGCTTCACGGGAATACGGCAT 1405
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CACCAATTCAGATCAAGCCGAAGGTGTTTCATTTCCCGTTGCTTCACGGGAATACGGCAT 1318
Query 1406 TGGAGCACAAATTCTAAGGGATCTTGGAGTTAGAGAGATGAAGGTGATGACGAATAATCC 1465
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1319 TGGAGCACAAATTCTGAGGGATCTTGGAGTTAGAGAGATGAAAGTGATGACGAATAATCC 1378
Query 1466 AGCACATTACGTTGGTCTTAAAGGCTATGGTTTATCAATTTCTGGTAAGGTTCCACTCAT 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 AGCACATTACGTTGGTCTTAAAGGCTATGGTTTATCAATTTCTGGTAAGGTTCCACTCAT 1438
Query 1526 TACTACTCCTTAAGTGTTG-TTTT 1548
|| | | | |||||||||| ||||
Sbjct 1439 TAGT-C-C-TTAAGTGTTGGTTTT 1459
> Ahg496632 jgi|Araly1|496632|fgenesh2_kg.8__2448__AT5G64300.1
Length=1978
Score = 392 bits (212), Expect = 4e-108
Identities = 614/804 (76%), Gaps = 44/804 (5%)
Strand=Plus/Plus
Query 429 TCTATTCCTCAAGCTATTGAAGATATTCGACATGGCAAGATGGTAGTTGTTGTAGATGAT 488
||||| ||||| || |||||||| || || || || ||| | || || ||||| ||||||
Sbjct 437 TCTATCCCTCAGGCCATTGAAGACATACGCCAAGGAAAGCTTGTGGTGGTTGTGGATGAT 496
Query 489 GAAGATAGAGAAAACGAAGGAGATTTGATAATGGCGGCATC-TTTGGCTACACCTGAAGC 547
|||||||||||||| ||||| |||||| | ||||| || || ||||| |||||||||||
Sbjct 497 GAAGATAGAGAAAATGAAGGCGATTTGGTGATGGCTGC-TCAATTGGCAACACCTGAAGC 555
Query 548 TATGGCTTTTGTTGT-AAAGCATGGGACTGGAATCGTGTGTGTGAGCATGAAAGGCGAAG 606
|||||||||| |||| ||| ||||| ||||| || || |||||||||||||||| || |
Sbjct 556 TATGGCTTTTATTGTGAAA-CATGGAACTGGGATAGTTTGTGTGAGCATGAAAGAAGATG 614
Query 607 ACT-TGGAGAGGTTAG-AGCTTCCTTTAATGGT-AACGC-GTAAGGATAACGAGGAAAAA 662
| | | ||||| || | | |||||| ||||||| || | | ||||| ||||| |||||
Sbjct 615 A-TCTCGAGAGATT-GCACCTTCCTCTAATGGTGAA-TCAG-AAGGAAAACGAAGAAAAG 670
Query 663 CTCCGC-ACGGCCTTCACGGTTTCAGTGGACGCAAAAAAGGGAACATCCACAGGTGTCTC 721
|| | | || || || || || | ||||| |||||| | || ||| | ||||| || ||
Sbjct 671 CT-CTCTACTGCATTTACAGTGACTGTGGATGCAAAACATGGTACAACAACAGGAGTATC 729
Query 722 AGCTCGTGATAGGGCGCA-AACAATATTAACCCTTGCATCAAAAGATTCAAAACCTGAAG 780
||||||||| ||||| | ||| ||||| | |||||||||| ||||||||| ||||| |
Sbjct 730 AGCTCGTGACAGGGC-AACAACGATATTGTCTCTTGCATCAAGAGATTCAAAGCCTGAGG 788
Query 781 ATTTCAATCGTCCTGGTCATATTTTTCCTTTG-AGATA-CAGAGAAGGTGGTGTTCTTAA 838
||||||| ||||| |||||||| || || || || || | | ||||| || ||||| ||
Sbjct 789 ATTTCAACCGTCCAGGTCATATCTTCCCGCTGAAG-TATC-GGGAAGGCGGGGTTCTGAA 846
Query 839 AAGAGCAGGGCATACAGAAGCCTCTGTTGA-CTTGACTGTGTTGGCCGGTTTAGAACCAG 897
||| || || || || ||||| |||||||| ||| ||||| || || || | || || |
Sbjct 847 AAGGGCTGGCCACACTGAAGCATCTGTTGATCTT-ACTGTTTTAGCTGGACTGGATCCTG 905
Query 898 TAT-CTGT-TTTATGTGAGATTGTAGATGATGATGGTTCCATGGCTAGATTACCAAGACT 955
| | || || ||||| ||||| ||||||||||||||||||||||||||||||| |||
Sbjct 906 T-TGGAGTACTT-TGTGAAATTGTTGATGATGATGGTTCCATGGCTAGATTACCAAAACT 963
Query 956 CCGCCAATTCGCT-CAAGAGAACAACTTGAAA-TTAATTTCAATCGCTGATTTAATCAGA 1013
|| |||| || | ||||| ||| ||||| || |||| ||||| ||||| ||||||
Sbjct 964 TCGTGAATTTGCCGCT-GAGAATAACCTGAAAATTG-TTTCCATCGCAGATTTGATCAGA 1021
Query 1014 TACCGAAGGAAA-AGAGAGAGACTGGTTGA--GTT-TACTGCGGTTGCGCCTATACCGAC 1069
|| |||| ||| ||||| | | | || || ||| | |||| | | || || || ||
Sbjct 1022 TATAGAAG-AAAGAGAGATAAATTAGTGGAACGTTCTTCTGCTGCT-CGG--ATCCCAAC 1077
Query 1070 AATGTGGGGACCATTCAAAGCACATTGCTTTAAGTC-ATTACTTGATGGAGTTGAGCACA 1128
|||||||||||| |||| || | |||| || ||| || ||| || ||| | |||||||
Sbjct 1078 AATGTGGGGACCTTTCACTGCTTACTGCTATAGGTCCAT-ACTAGACGGAATAGAGCACA 1136
Query 1129 TTGCAATGGTCAAGGGAGAAATCGGAGATGGG-AAGGATATTCTCGTGAGAGTACACGCG 1187
| |||||||| ||||| || || || || || ||| | ||||| ||||| || || |
Sbjct 1137 TAGCAATGGTTAAGGGTGAGATTGGTGACGGTCAAG-ACATTCTTGTGAGGGTTCATTCT 1195
Query 1188 GAGTGTATCACAG-ATGATATATT 1210
|| ||| |||||| | || |||||
Sbjct 1196 GAATGTCTCACAGGA-GACATATT 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66086575075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5