BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22460.1
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481106 jgi|Araly1|481106|fgenesh2_kg.4__166__AT2G22460.1 1555 0.0
> Ahg481106 jgi|Araly1|481106|fgenesh2_kg.4__166__AT2G22460.1
Length=1025
Score = 1555 bits (842), Expect = 0.0
Identities = 969/1030 (94%), Gaps = 10/1030 (1%)
Strand=Plus/Plus
Query 2 TTTTTTGCTTCATCAGAAGTATTAACAATGTCAAAGAGCAAAGTCATAGCTTCAATGGAG 61
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTTTGCTTCATCGGAAGTATTAACAATGTCAAAGAGCAAAGTCATAGCTTCAATGGAG 60
Query 62 TTTCAATCGACGGTGGTAGCAACCGTAGACTGCCAGAAACAAGTCCGGTCATGGCGTCTC 121
|||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||
Sbjct 61 TTTCAATCGACGGTGGTAACCACCGTAGACTGCCAGAAACAAGTCAGGTCATGGCGTCTC 120
Query 122 CTCCGCTCATTCATTCAGCTTTTAATCCCAACTTGCAACTGCACATTAGTCCAAGAACTC 181
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCCGCTCATTCATTCAGCTTCTAATCCCAACTTGCAACTGCACATTAGTCCAAGAACTC 180
Query 182 GAACAAGATAACACTAACTTGAGAGGCAAGAAACTCTACAATGACATCAAATCACGCACG 241
|||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 181 GAACAAGATAACACTAACTTGAGAGGAAAGAACCTCTACAACGACATCAAATCACGCACG 240
Query 242 TCTTCCTTTCGCTCCTCTTCGTCCCTTTCTTCATCTACAGTCACAGGAACAATCTTCGGA 301
||||| ||||| |||||||| ||||||||||| || || ||||| |||||||||||||||
Sbjct 241 TCTTCTTTTCGTTCCTCTTCATCCCTTTCTTCGTCGACTGTCACTGGAACAATCTTCGGA 300
Query 302 TACCGAAAAGGAAAAATCAATTTCTGTATCCAAACACCAAGAAAATCGACAAACCTTGAT 361
||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 301 TACCGCAAAGGAAAGATCAATTTCTGTATCCAAACACCAAGAAAATCAACAAACCTCGAT 360
Query 362 CTTCTCCTCGAGCTAGCAGTTCCAACGACGGTTTTAGCTCGAGAAATGAGAGAAGGAGCG 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 CTTCTCCTCGAGCTAGCAGTTCCAACGACGGTTTTAGCTCGAGAAATGAGAGAAGGCGCG 420
Query 422 TTGCGTATAGTGTTAGAACGTAACAACGAAAAACAAGACGACGACTCTTTTTTGTCAAAG 481
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 421 TTGCGTATAGTGTTAGAACGTAACAACGAAAAAGAAGACGACGACTCTATTTTGTCAAAG 480
Query 482 CCATTTTGGAACATGTATTGCAATGGAAAAAGAGTTGGTTATGCGAGAAAACGCAGTCCC 541
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 481 CCATTTTGGAACATGTATTGCAACGGAAAAAGAGTTGGGTATGCGAGAAAACGCAGTCCG 540
Query 542 TCTCAGGATGACATGACGGCGTTGACCGCTCTTAGTAAAGTGGTGGTTGGAGCAGGAGTT 601
||||| |||||||||||||||||||||||||| ||||||||| |||||||||| || |||
Sbjct 541 TCTCAAGATGACATGACGGCGTTGACCGCTCTGAGTAAAGTGATGGTTGGAGCCGGCGTT 600
Query 602 GTGACTGGGAAAGAACTTGGCCGGTTCGATGATGAATTGATGTATTTGAGAGCTAGTTTC 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTGACTGGGAAAGAACTTGGCCGGTTCGATGATGAATTGATGTATTTGAGAGCTAGTTTC 660
Query 662 AGACGAGTTAATGGTTCGAAAGAATCTGAATCTTTCCATTTGATTGATCCAGCTGGGAAT 721
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGACGAGTGAATGGTTCGAAAGAATCTGAATCTTTCCATTTGATTGATCCAGCTGGGAAT 720
Query 722 ATTGGACAAGAACTCAGTATCTTCATTGTCCCATCATCAGTCTGATTTGATTACC-CGTG 780
|| ||||||||||||||||||||||| ||||||||||| |||||| || |||||| | ||
Sbjct 721 ATCGGACAAGAACTCAGTATCTTCATCGTCCCATCATCGGTCTGAGTTAATTACCGC-TG 779
Query 781 GAGATGCTCGTACATAAGAGTTCTGTTTTCAAGTTTCTTTCCTTTTATTTTTTCCTTGGG 840
||| || |||||||||||||||||||||||||||||||| |||||| ||||||| ||||
Sbjct 780 GAG-TGATCGTACATAAGAGTTCTGTTTTCAAGTTTCTTCCCTTTTTTTTTTTCTTTGG- 837
Query 841 TCTAGAGAAAAGAACTTGTTTTTGAGTCGTGCT-AAAGCTTTTGGTTTTAGCTCTGGCTT 899
||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||
Sbjct 838 TCTAGAGAAAAGAACTTGTTTTTGAGTCGTGCTTAAAGCTATTGGCTTTAGCTCTGGCTT 897
Query 900 TGTATGTAATTTACAT-A--CCATTTCGATAGTCCATTGATTTGAGTTTTAAtttttttA 956
|||||||||| ||||| | ||| |||||||||||||||||| |||||| || | ||| |
Sbjct 898 TGTATGTAATCTACATCATACCAATTCGATAGTCCATTGATTCGAGTTT-AAGTGTTT-A 955
Query 957 TCTTGTTGCTATCATTTCTGTACTACATAAATAATGGTCTTGTCTTTaaaaaaaCTGATT 1016
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 956 TCTTGTTGCTATCATTTCTGTACTACATAAATAATGGTCTCGTCTTTAAAAAAACTGCTT 1015
Query 1017 ATTTAGAGAC 1026
|| ||||||
Sbjct 1016 ATCAAGAGAC 1025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38161039917
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5