BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22470.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481107 jgi|Araly1|481107|fgenesh2_kg.4__167__AT2G22470.1 1035 0.0
> Ahg481107 jgi|Araly1|481107|fgenesh2_kg.4__167__AT2G22470.1
Length=685
Score = 1035 bits (560), Expect = 0.0
Identities = 643/683 (94%), Gaps = 5/683 (1%)
Strand=Plus/Plus
Query 1 ACACCATCAACAAAAATAAAG--AAGAGTTTATAACATTAAACAGAGAGAGTTTCAAGAT 58
|||||||||||||||| |||| ||||||||| ||||| ||||| | |||||||||||||
Sbjct 1 ACACCATCAACAAAAACAAAGAAAAGAGTTTAAAACATCAAACAAACAGAGTTTCAAGAT 60
Query 59 TCAGACAAAGAAGAGATAATCTAAAAATGAATTCTAAGGCAATGCAAGCTTTGATCTTTC 118
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCAGACAAAGAAGAGAGATTCTAAAAATGAATTCTAAGGCAATGCAAGCTTTGATCTTTC 120
Query 119 TTGGTTTCTTGGCCACTTCATGTCTCGCTCAAGCTCCTGCACCAGCACCAACCACCGTTA 178
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 121 TTGGTTTCTTGGCCACTTCATGTCTCGCTCAAGCGCCTGCACCTGCACCAACCACCGTTA 180
Query 179 CTCCTCCACCAACGGCGCTTCCTCCAGTGACAGCAGAAACACCTTCACCAATTGCTTCAC 238
|||||||||||||||| |||||||| |||||||||||||||||||||||| |||| ||||
Sbjct 181 CTCCTCCACCAACGGCACTTCCTCCGGTGACAGCAGAAACACCTTCACCAGTTGCCTCAC 240
Query 239 CGCCTGTTCCAGTTAACGAGCCAACTCCAGCTCCTACCACTTCTCCAACAACATCCCCGG 298
|||| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 241 CGCCGGTCCCAGTTAACGAGCCAACTCCAGCTCCAACCACTTCTCCAACAACATCTCCGG 300
Query 299 TTGCTTCTCCTCCTCAGACCGATGCTCCTGCTCCCGGTCCTTCCGCTGGATTAACTCCAA 358
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 301 TTGCTTCTCCTCCTCAGACCGATGCTCCTGCTCCTGGTCCCTCCGCTGGATTAACTCCAA 360
Query 359 CTTCGTCTCCAGCTCCAGGACCAGACGGTGCTGCTGATGCACCAAGTGCCGCATGGGCTA 418
|| || ||||||||||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 361 CTCCGGCTCCAGCTCCAGGACCAGACGGTGCCGCTGATGCACCAAGCGCCGCGTGGGCTA 420
Query 419 ACAAAGCTTTCCTTGTGGGAACAGCTGTTGCCGGAGCTTTATACGCTGTCGTTTTGGCTT 478
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 421 ACAAAGCTTTCCTTGTAGGAACAGCTGTTGCCGGAGCTTTATACGCTGTCGCTTTGGCTT 480
Query 479 AGAGAGCTTTTGAGTTTGGTGGATTTGGATCCTCTGCTTTCTATTACTGTTTTATTTTAA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 AGAGAGCTTTTGAGTTTGGTGGATTTGGATCCTCTGCTTTCTATTACTGTTTTATCTTAA 540
Query 539 TTACTTCTTCTCGTTCATATTTGTTATTTACTACTATTATCATTTTGACGTGGACACTTG 598
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||
Sbjct 541 TTACTTCTTCTCGTTCATATTTGTTATTTACTTCTATTATTATTTTGACGTGGACACATG 600
Query 599 T-TG-TT-GTTGGGGATGAGATGAACATAGAGACAATATGGTGTAATATCTATTCTTTTA 655
| | || ||||||| |||||||||||||||||| | ||||||||||||||||||||||
Sbjct 601 TATAATTTGTTGGGGTTGAGATGAACATAGAGACGAGATGGTGTAATATCTATTCTTTTT 660
Query 656 TATAAATCAAAATAATTCTTTTA 678
|||||||||||||||||||||||
Sbjct 661 TATAAATCAAAATAATTCTTTTA 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25084879386
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5