BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22475.1
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481108 jgi|Araly1|481108|fgenesh2_kg.4__168__AT2G22475.1 1389 0.0
Ahg353023 jgi|Araly1|353023|fgenesh1_pg.C_scaffold_7000196 785 0.0
> Ahg481108 jgi|Araly1|481108|fgenesh2_kg.4__168__AT2G22475.1
Length=1152
Score = 1389 bits (752), Expect = 0.0
Identities = 972/1072 (91%), Gaps = 39/1072 (4%)
Strand=Plus/Plus
Query 40 ATCCTTGCAAAATTCAAACTCAAACAAACCGTTTATCTCACGCGCCGCCGTACTCGCCAC 99
||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1 ATCCTTGCAGAATTCAAACTCAAACAAGCCGTTTATCTCACGCGCCGCCGTACGCGCCAC 60
Query 100 GATCCGTCTTTGGAGACCAATTTATGGAGCCGCCGAAGGGAGATACCGTAGTGAAGACTG 159
|||||||| ||||||| ||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 61 GATCCGTCCTTGGAGATCAATTGATGGAGCCGCCGAAGGGAGATACCGAAGTGAAGACTG 120
Query 160 AGGTCCCGGTGAAGGATCCATCGCTAAGCGTCGTCGATTCGAAAACGAAGGGAGTCGAGG 219
| || ||||| |||||||||||||| | | || | | |||||||
Sbjct 121 ATGTTCCGGTCAAGGATCCATCGCT----G-AG-CG--T------C-------GTCGAGG 159
Query 220 ATGCGAACACTGAGATAGCCTTGTCCGATGAGGTTGAAATCGAGACGAAGGGAAGCGATT 279
|||||| ||| |||||| | ||||||||||||||| ||||| | | ||| ||||||
Sbjct 160 ATGCGAGCACGGAGATATCTTTGTCCGATGAGGTT-TTATCGA-A-G--GGG-AGCGATA 213
Query 280 CGACACCGGTGAAAGCTCCGAGTCGAACATCGTCTGGATCGAAGAAATCTGTACATTGGA 339
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 214 CAACACCGGTGAAAGCTCCGAGTCGAACATCGTCTGGATCGAAGAAATCTGTACACTGGA 273
Query 340 GCCCCGAATTGGTGTCTGGATCTCAGGAACCGGATCAGAAAGCTG---CATCGTCTTCTT 396
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 274 GCCCCGAATTGGTGTCTGGGCCTCAGGAACCGGATCAGAAAGCTGCATCATCGTCTTCTT 333
Query 397 CGGCTGGATCTAATCCGTATATTGCTCGTTCTCCAGCTGAGAC-T--TCAGATGCTTCGT 453
||| |||||||||||||||||||||||||||||| |||||||| | |||||||| ||||
Sbjct 334 CGGGTGGATCTAATCCGTATATTGCTCGTTCTCCGGCTGAGACGTCGTCAGATGCGTCGT 393
Query 454 TGAAAGATACGATGGAGACTGTGAAAGGAGTGCTTGGTAGATGGGGAAAGAGGGTTGCAG 513
| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 394 T---AGATACGATGGAGTCTGTGAAAGGAGTGCTTGGTAGATGGGGAAAGAAGGTTGCAG 450
Query 514 AAGCAGCAAAGAAGACGGAGAGCCTTGCCGGGAACACATGGCAACACCTGAGAACTGCTC 573
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 AAGCAGCGAAGAAGACGGAGAGCCTTGCCGGGAACACATGGCAACACCTGAGAACTGCTC 510
Query 574 CGAGTTTTGCGGATGCTGCAATGGGAAGAATTGCACAGAGTACAAAGGTCTTTGCAGAAG 633
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 511 CGAGTTTTGCGGATGCTGCTATGGGAAGAATTGCACAGAGTACTAAGGTCTTTGCAGAAG 570
Query 634 GAGGATATGAGAAGATATTCCGACAAACCTTTGAGACAGATCCCGAAGAACAGTTGCTAA 693
||||||||||||||||||| ||||||||||||||||||| ||| |||||||| ||||||
Sbjct 571 GAGGATATGAGAAGATATTTCGACAAACCTTTGAGACAGTTCCTGAAGAACAACTGCTAA 630
Query 694 ATTCTTTTGCATGTTACTTGTCAACATCAGCTGGCCCAGTTATGGGAGTTCTATATATAT 753
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 631 ATTCTTTTGCATGTTACTTGTCAACATCAGCTGGCCCAGTTATGGGAGTTGTATATATAT 690
Query 754 CCAGTGCCAAACTTGCTTACTGTAGTGACAACCCTCTCTCCTATAAAAACGGTGATCAAA 813
| | ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 691 CAACTGCCAAACTTGCTTACTGTAGTGACAATCCTCTCTCCTATAAAAATGGTGATCAAA 750
Query 814 CCGAATGGAGCTATTACAAGGTAGTAATTCCATTACATCAACTTAAAGCAGTGAATCCAT 873
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 751 CCGAATGGAGCTATTACAAGGTAGTAATCCCATTACATCAACTTAAAGCAGTGAACCCAT 810
Query 874 CAGCGAGCATAGTCAATCCTGCAGAGAAGTACATACAGGTGATTTCGGTAGACAATCATG 933
|| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 811 CAACAAGCATAGTCAATCCTGCAGAGAAGTACATTCAGGTGATTTCGGTAGACAATCATG 870
Query 934 AGTTTTGGTTCATGGGTTTTTTAAACTACGACGGCGCTGTCACGTCTCTGCAAGATTCTT 993
|||| |||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 871 AGTTCTGGTTCATGGGTTTCTTAAACTACGAAGGCGCCGTCACATCTCTGCAAGATTCTT 930
Query 994 TGCAAGCCGGTGCTTTAAGGTCGGTGTGATACATAACTGGATGACTGATGACCATAAAAG 1053
||||||| ||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 931 TGCAAGCTGGTGCTTTACGGTCGGTGTGATACATA-CTGGATGAATGATGACCATAAAAG 989
Query 1054 CATGTTGATCTCCACCTCTTC-TTGCTTAGTCATATCAGAAGACTCAAATTT 1104
| || || ||| || | || ||||||||||||||||||||||||| ||||
Sbjct 990 CCTGCTGGTCTGCAACG-TTGATTGCTTAGTCATATCAGAAGACTCAGATTT 1040
Score = 122 bits (66), Expect = 4e-27
Identities = 84/92 (91%), Gaps = 3/92 (3%)
Strand=Plus/Plus
Query 1166 AAATTTACTTTAAAATGTTTTATCTTTTGATATTTTTATGAGAAGACAGCTTAATTGCAA 1225
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1061 AAATTTAATTTAAAATGTTTTATCTTTTGATATTTTTATGAGAGGACAGCTTAATTGTAA 1120
Query 1226 TT--T-ATTCAATAGCAGTTGCTTTTAGTTTC 1254
|| | ||||| |||||||| |||||||||||
Sbjct 1121 TTCATCATTCAGTAGCAGTTCCTTTTAGTTTC 1152
> Ahg353023 jgi|Araly1|353023|fgenesh1_pg.C_scaffold_7000196
Length=930
Score = 785 bits (425), Expect = 0.0
Identities = 635/737 (86%), Gaps = 11/737 (1%)
Strand=Plus/Plus
Query 293 AGCTCCGAGTCGAACATCGTCTGGATCGAAGAAATCTGTACATTGGAGCCCCGAATTGGT 352
||| |||| ||||||| |||||||||||| |||||| || ||||||| || ||||||||
Sbjct 198 AGCACCGACTCGAACAGCGTCTGGATCGAGGAAATCGGTCCATTGGAATCCTGAATTGGT 257
Query 353 GTCTGGATCTCAGGAACCGGATCAGAAA-GCTGCATCGTCTTCTT-CG--GCTGGATCTA 408
|||| ||||| || ||||||||||||| || |||||| |||| || || |||||||
Sbjct 258 TTCTGAATCTCCGGCACCGGATCAGAAATCCT-TATCGTCGTCTTCCGCCGCGGGATCTA 316
Query 409 ATCCGTATATTGCTCGTTCTCCAGCTGAGACTTCAGATGCTTCGTTGAAAGATACGATGG 468
||||||| | |||||| |||| ||||| ||||| ||||| ||||||||||| |||||||
Sbjct 317 ATCCGTACGTCGCTCGTGCTCCTGCTGAAACTTCGGATGCCTCGTTGAAAGAAACGATGG 376
Query 469 AGACTGTGAAAGGAGTGCTTGGTAGATGGGGAAAGAGGGTTGCAGAAGCAGCAAAGAAGA 528
| ||||||||||| |||||||| |||||||||| |||||||| |||||| |||| ||||
Sbjct 377 AAACTGTGAAAGGTGTGCTTGGGAGATGGGGAAGGAGGGTTGGAGAAGCTGCAATGAAGG 436
Query 529 CGGAGAGCCTTGCCGGGAACACATGGCAACACCTGAGAACTGCTCCGAGTTTTGCGGATG 588
|||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 437 CGGAGAGCCTTGCCGGTAACACGTGGCAACACCTGAAAACTGCTCCGAGTTTTGCGGATG 496
Query 589 CTGCAATGGGAAGAATTGCACAGAGTACAAAGGTCTTTG-CAGAAGGAGGATATGAGAAG 647
|||||||||||||||||||||||||||||||||| | || |||||||||| ||||||||
Sbjct 497 CTGCAATGGGAAGAATTGCACAGAGTACAAAGGT-TCTGGCAGAAGGAGGGTATGAGAAA 555
Query 648 ATATTCCGACAAACCTTTGAGACAGATCCCGAAGAACAGTTGCTAAATTCTTTTGCATGT 707
|| ||| | ||||||||||| |||| ||| || || ||| ||| |||||| ||||| ||
Sbjct 556 ATTTTCAGGCAAACCTTTGAAACAGTTCCAGAGGAGCAGCTGCAAAATTCATTTGCGTGC 615
Query 708 TACTTGTCAACATCAGCTGGCCCAGTTATGGGAGTTCTATATATATCCAGTGCCAAACTT 767
|||||||||||||||||||| ||||| ||||||||||| || ||||||| ||| ||||||
Sbjct 616 TACTTGTCAACATCAGCTGGTCCAGTCATGGGAGTTCTTTACATATCCACTGCTAAACTT 675
Query 768 GCTTACTGTAGTGACAACCCTCTCTCCTATAAAAACGGTGATCAAACCGAATGGAGCTAT 827
|| |||||||| || ||||||||||| |||||||| || |||||| ||||||||||||
Sbjct 676 GCCTACTGTAGCGATAACCCTCTCTCGTATAAAAATTCTGGTCAAACTGAATGGAGCTAT 735
Query 828 TACAAGGTAGTAATTCCATTACATCAACTTAAAGCAGTGAATCCATCAGCGAGCATAGTC 887
|| ||||||||||||||||||||||| |||||| | || || || || || |||||||||
Sbjct 736 TATAAGGTAGTAATTCCATTACATCAGCTTAAATCGGTTAACCCCTCGGCAAGCATAGTC 795
Query 888 AATCCTGCAGAGAAGTACATACAGGTGATTTCGGTAGACAATCATGAGTTTTGGTTCATG 947
||||||||||| |||||||| ||||| || ||||| ||| | ||||||||||||||||||
Sbjct 796 AATCCTGCAGAAAAGTACATCCAGGTAATCTCGGTCGACGACCATGAGTTTTGGTTCATG 855
Query 948 GGTTTTTTAAACTACGACGGCGCTGTCAC-GTCTCTGCAAGATTCTTTGCAAGCCGGTGC 1006
||||| ||||||||||| |||||||| || | ||||||||||| | ||||||||||||||
Sbjct 856 GGTTTCTTAAACTACGAAGGCGCTGTTACAG-CTCTGCAAGATACATTGCAAGCCGGTGC 914
Query 1007 TTTA-AGGTCGGTGTGA 1022
||| || || ||||||
Sbjct 915 CTTACAG-TCTGTGTGA 930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46853064993
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5