BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22480.1
Length=1889
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481109 jgi|Araly1|481109|fgenesh2_kg.4__169__AT2G22480.1 2776 0.0
> Ahg481109 jgi|Araly1|481109|fgenesh2_kg.4__169__AT2G22480.1
Length=1814
Score = 2776 bits (1503), Expect = 0.0
Identities = 1728/1834 (94%), Gaps = 26/1834 (1%)
Strand=Plus/Plus
Query 16 TGTGttttttttGTTTTGTAAATTTGGCAAAAACTCCCTCC-aaaaaaaaaCTTAGTTGA 74
||| |||||||| ||||||||| ||| |||||||||||||| ||||||||||| | ||||
Sbjct 1 TGTTTTTTTTTTTTTTTGTAAAATTGTCAAAAACTCCCTCCAAAAAAAAAACTCAATTGA 60
Query 75 CTGAGAAAACTAAGCAAAAAGATCTCCGATCGGAATCTTCTTATTCGCCATGGATGCTCT 134
||||||||||||||||||| || ||||||||||||| || ||||||||||||||
Sbjct 61 CTGAGAAAACTAAGCAAAAGGA--TCCGATCGGAATC-TC-----GGCCATGGATGCTCT 112
Query 135 TTCTCAGGCGATCAGTTCCGGGA--T-CTCCGTTCCTTACAAGAACAATTCTTCTTCTCT 191
|||||||||||||| |||||||| | |||||||||||||||||| || |||||||||
Sbjct 113 TTCTCAGGCGATCACTTCCGGGATCTCCTCCGTTCCTTACAAGAAGAACAATTCTTCTCT 172
Query 192 CGTTCCTTCTCACGGACTCACCTCCTTAATCCTCCGGAAAT-CGAGATCTCCGGTGAATC 250
|||||||||||| |||||| ||||||||||||||||| ||| |||||||||||| |||||
Sbjct 173 CGTTCCTTCTCATGGACTCTCCTCCTTAATCCTCCGG-AATACGAGATCTCCGGCGAATC 231
Query 251 CCTCATCACG-ATCTCGCGTCTCGGTGCGAGCTTCGGAGATTCAACACAGCAAAACCTCA 309
|||||||||| |||| || |||||| ||||||||| ||||||||| ||||||||||||
Sbjct 232 CCTCATCACGAATCT--CG--TCGGTGAGAGCTTCGGCGATTCAACATAGCAAAACCTCA 287
Query 310 GCTTCATCGATCGATCTCAGCGATCCAGATTGGAAATTAAAGTATGAGAAAGATTTCGAG 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 GCTTCATCGATCGATCTCAGCGATCCAGATTGGAAATTAAAGTATGAGAAAGATTTCGAG 347
Query 370 CAACGATTCAGCATACCTCACATCACTGATGTCTTACCTGATGCTGAAGCCATTCGTTCA 429
|||||||||| ||| ||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 348 CAACGATTCAACATCCCTCACATCACTGATGTCTTACCTGATGCAGAAGCTATCCGTTCA 407
Query 430 ACGTTTTGTCTTAAGATGAGGTCTCCGACGGAAGATTTTGTTGGTGGTTACCCTTCTGAT 489
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 ACGTTTTGTCTCAAGATGAGGTCTCCGACGGAAGATTTTGTTGGTGGTTACCCTTCTGAT 467
Query 490 GAAGAATGGCATGGATACATTAATAACAATGATAGAGTTCTTCTCAAGGTTATTAGTTAC 549
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 468 GAAGAATGGCATGGATACATTAATAACAATGATAGAGTTCTTCTCAAGGTTATTAGATAC 527
Query 550 TCCTCACCTACTTCTGCTGGAGCTGAGTGCCTTGATCATGACTGTTCTTGGGTTGAACAA 609
|||||||||||||||||||||||||||||| |||||| ||||||||||||| |||| |||
Sbjct 528 TCCTCACCTACTTCTGCTGGAGCTGAGTGCATTGATCCTGACTGTTCTTGGATTGAGCAA 587
Query 610 TGGATTCACCGTGCTGGTCCGAGGGAGAAGATATACTTCAGGCCGGAAGAAGTGAAAGCT 669
||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| |||
Sbjct 588 TGGATTCACCGTGCTGGTCCGAGGGAGAAGATATATTTCAGACCGGAACAAGTGAAGGCT 647
Query 670 GCGATTATCACTTGTGGTGGCCTTTGCCCTGGTCTCAATGATGTCATCAGACATATTGTC 729
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 648 GCGATTATCACTTGTGGTGGCCTTTGTCCTGGTCTTAATGATGTCATTAGACATATTGTC 707
Query 730 ATTACTCTTGAGATTTATGGTGTTAAGAACATTGTGGGGATTCCTTTCGGTTATCGAGGC 789
|| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 708 ATCACTCTTGAGATTTATGGTGTTAAGAACATTGTCGGGATTCCTTTTGGTTATCGAGGT 767
Query 790 TTCTCTGATAAAGATCTAACTGAAATGCCGTTATCAAGGAAAGTGGTTCAGAATATTCAT 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 TTCTCTGATAAAGATCTAACTGAAATGCCGTTATCAAGGAAAGTGGTTCAGAATATTCAT 827
Query 850 TTATCTGGAGGAAGTTTGCTTGGAGTTTCACGTGGAGGCCCGAGTGTGAGTGAAATTGTC 909
||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 828 CTATCTGGAGGAAGCTTGCTTGGAGTTTCACGTGGAGGCCCGAGTGTTAGCCAAATTGTC 887
Query 910 GACAGCATGGAGGAGAGAGGAATCAACATGCTTTTCGTGCTCGGTGGAAACGGAACTCAT 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 GACAGCATGGAGGAGAGAGGAATCAACATGCTTTTCGTGCTCGGTGGAAACGGAACTCAT 947
Query 970 GCTGGCGCCAACGCTATACACAATGAGTGCCGCAAAAGAAAGATAAAGGTAGCTGTAGTT 1029
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 GCTGGCGCTGACGCTATACACAATGAGTGCCGCAAAAGAAAGATAAAGGTAGCTGTAGTT 1007
Query 1030 GGTGTGCCAAAAACCATCGACAATGATATTTTACATATGGATAAAACTTTTGGGTTTGAT 1089
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1008 GGTGTGCCAAAAACCATTGACAATGATATTTTACATATGGACAAAACTTTTGGGTTTGAT 1067
Query 1090 ACTGCTGTTGAAGAAGCTCAACGAGCAATTAACTCTGCTTACATTGAGGCACATAGTGCT 1149
||||||||||||||||| |||||||| || |||||||| ||||| |||||||| ||||||
Sbjct 1068 ACTGCTGTTGAAGAAGCACAACGAGCTATAAACTCTGCCTACATCGAGGCACACAGTGCT 1127
Query 1150 TATCATGGCATTGGCGTTGTAAAACTGATGGGTCGTAACAGTGGTTTCATTGCTATGCAA 1209
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1128 TATCATGGCATTGGTGTTGTAAAACTGATGGGTCGTAACAGTGGTTTCATCGCGATGCAA 1187
Query 1210 GCCTCTCTAGCAAGTGGACAAGTCGACATCTGTTTGATTCCTGAGGTTCCCTTCAATCTT 1269
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1188 GCCTCTCTAGCAAGTGGACAAGTTGACATCTGTTTGATTCCTGAGGTTCCCTTCAATCTT 1247
Query 1270 CATGGGCCTAATGGTGTATTGAAGCATTTGAAGTACCTTATTGAAACAAAAGGCTCTGCT 1329
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1248 CATGGGCCTAATGGTGTACTGAAGCATTTGAAGTACCTTATTGAAACAAAAGGCTCCGCT 1307
Query 1330 GTGATCTGTGTAGCAGAAGGAGCTGGACAGAATTTTCTTGAGAAAACCAATGCCAAAGAT 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 GTGATCTGTGTAGCAGAAGGAGCTGGACAGAATTTTCTTGAGAAAACCAATGCCAAAGAT 1367
Query 1390 GCATCTGGAAACGCCGTACTTGGTGATTTCGGTGTGTATATTCAACAAGAGACTAAGAAG 1449
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1368 GCATCTGGAAACGCAGTACTTGGTGATTTCGGTGTGTACATTCAACAAGAGACGAAGAAG 1427
Query 1450 TATTTCAAAGAAATAAGTACTCCAATAGATGTGAAGTATATTGATCCAACATACATGATT 1509
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 TATTTTAAAGAAATAAGTACTCCAATAGATGTGAAGTATATTGATCCAACATACATGATT 1487
Query 1510 CGCGCTGTACGTGCAAATGCCTCGGATGGTATCCTCTGCACCGTTCTTGGACAAAACGCT 1569
|||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1488 CGCGCTGTCCGTGCAAATGCCTCAGATGGTATCCTCTGTACCGTTCTTGGACAAAACGCA 1547
Query 1570 GTTCATGGTGCGTTTGCTGGATACAGTGGAATCACGGTAGGCATAATCAACACTCACTAT 1629
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1548 GTTCATGGTGCGTTTGCTGGATACAGCGGAATCACGGTAGGCATAATCAACACTCACTAT 1607
Query 1630 GCATATTTGCCAATCACTGAGGTAATTGCATATCCAAAATCAGTGGATCCTAATAGTCGA 1689
|| |||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1608 GCTTATTTGCCAATCCCTGAGGTAATTGCATATCCAAAATCAGTCGATCCAAATAGTCGA 1667
Query 1690 ATGTGGCATCGTTGCTTGACATCAACGGGCCAACCCGATTTCATCTAAAAAGATATTATT 1749
||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||
Sbjct 1668 ATGTGGCATCGTTGCTTGACATCAACGGGTCAACCCGATTTCATCTAAAAA-ATCTTATT 1726
Query 1750 ATTCAATCACGAAACAAACTGATGATAAAAATAAGCCTTGAAATGTATAGACAGTAGCAT 1809
|||||||||||||||||||| | |||| |||||||||||||||||| |||| |||||
Sbjct 1727 ---CAATCACGAAACAAACTGAT-A-AAAA-TAAGCCTTGAAATGTATATACAGCAGCAT 1780
Query 1810 TCTTGGTTCCTTGTTATGATGTATCAAATCATAT 1843
|||||||||||| |||||||||||||||||||||
Sbjct 1781 TCTTGGTTCCTTATTATGATGTATCAAATCATAT 1814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70962126435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5