BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22490.2
Length=1715
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481110 jgi|Araly1|481110|fgenesh2_kg.4__170__AT2G22490.1 1934 0.0
> Ahg481110 jgi|Araly1|481110|fgenesh2_kg.4__170__AT2G22490.1
Length=1628
Score = 1934 bits (1047), Expect = 0.0
Identities = 1325/1449 (91%), Gaps = 60/1449 (4%)
Strand=Plus/Plus
Query 260 CAAACCAAACCCCATGGCTGAGAATCTTGCTTGTGGTGAAACCAGCGAGTCATGGATCAT 319
||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 216 CAAACCAAA-CCCATGGCCGAGAATCTTGCTTGTGGTGAAACCACCGAGTCATGGATCAT 274
Query 320 TGACAACGACGATGATGATATCAACTATGGCGGCGGATTTACGAACGAGATTGATTACAA 379
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 TGACAACGACGCCGATGATATCAACTATGGCGGCGGATTTACGAACGAGATTGATTACAG 334
Query 380 TCACCAACTTTTTGCTAAAGACGACAACTTTGGCGGCAACGGATCAATTCCGATGATGGG 439
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 TCATCAACTTTTTACTAAAGACGACAACTTTGGCGGCAACGGATCAATTCCGATGATGGG 394
Query 440 ---TTCTTCTTCATCGTCCTTGAGTGAAGACAGAATCAAAGAGATGTTGGTGAGAGAGAT 496
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 395 TTCTTCTTCTTCATCGTCCTTGAGTGAAGACAGAATCAGAGAGATGTTGGAGAGAGAGAT 454
Query 497 TGAGTTTTGCCCTGGAACTGATTATGTTAAGAGATTGCTTTCTGGTGATTTGGATTTGTC 556
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 TGAGTTCTGCCCTGGAACTGATTATGTTAAGAGATTGCTTTCTGGTGATTTGGATTTGTC 514
Query 557 TGTTCGAAACCAAGCTCTTGATTGGATTCTAAAGGTTTGTGCTCATTACCATTTTGGACA 616
|||| ||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 515 TGTTAGAAGCCAAGCTCTGGATTGGATTTTAAAGGTTTGTGCTCATTACCATTTTGGACC 574
Query 617 TCTGTGCATATGCCTATCCATGAACTACTTGGATCGGTTCTTAACATCCTATGAATTGCC 676
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 575 TCTGTGCATATGTCTATCCATGAACTACTTGGATCGGTTCTTAACGTCCTATGAATTGCC 634
Query 677 GAAAGACAAGGATTGGGCTGCTCAGTTACTAGCTGTGTCTTGCTTATCATTAGCATCCAA 736
|||||||||||||||||||| |||||| |||||||| |||||||||||||||||| ||||
Sbjct 635 GAAAGACAAGGATTGGGCTGTTCAGTTGCTAGCTGTCTCTTGCTTATCATTAGCAGCCAA 694
Query 737 AATGGAAGAAACTGATGTGCCTCACATTGTTGATTTACAGGTGGAAGATCCCAAGTTTGT 796
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 695 AATGGAAGAAACTGATGTGCCTCAAATTGTTGATTTACAGGTGGAAGATCCCAAGTTTGT 754
Query 797 TTTTGAGGCCAAAACAATAAAAAGGATGGAGCTTTTGGTTGTCACCACTTTGAATTGGAG 856
|||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||||
Sbjct 755 TTTTGAGGCCAAAACAATAAAAAGGATGGAGCTTTTGGTTCTCAACACATTGAACTGGAG 814
Query 857 ATTGCAAGCTCTAACTCCATTCTCCTTCATTGATTATTTCGTTGACAAGATCAGTGGTCA 916
|||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||
Sbjct 815 ATTGCAAGCTCTAACTCCATTCTCCTTCGTTGATTATTTCGTCGACAAGATTAGTGGTCA 874
Query 917 CGTGTCGGAGAATTTGATCTATAGATCGTCAAGATTCATCTTAAACACCACCAAAGCAAT 976
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 875 TGTGTCAGAGAATTTGATCTATAGATCGTCGCGATTCATCTTAAACACCACCAAAGCAAT 934
Query 977 TGAATTCTTAGACTTCAGGCCTTCTGAGATAGCTGCAGCTGCTGCAGTGTCTGTTTCCAT 1036
|||||||| |||||||||||||||||||||||||||||| || ||||| ||||| |||||
Sbjct 935 TGAATTCTCAGACTTCAGGCCTTCTGAGATAGCTGCAGCAGCAGCAGTATCTGTCTCCAT 994
Query 1037 TTCAGGAGAAACAGAATGCATTGATGAGGAAAAGGC-ACTGTCTAGTCTCATATATGTAA 1095
||||||||||||||||||||||||||| |||||||| | |||||| |||| |||||||||
Sbjct 995 TTCAGGAGAAACAGAATGCATTGATGACGAAAAGGCGA-TGTCTAATCTCCTATATGTAA 1053
Query 1096 AACAGCAGGAGAGGGTGAAGAGATGTTTGAATCTGATGAGAAGTCTCACTGGGGAGGAGA 1155
||||| || |||| ||||||||||||||||||||||||||| |||||| |||||| | |
Sbjct 1054 AACAGGAG-AGAG--TGAAGAGATGTTTGAATCTGATGAGAACTCTCACAGGGGAG-A-A 1108
Query 1156 ATGTG-CGGGGAACTAGTTTATCGCAGGAGCAGGCGCGAGTT-GCGGTAAGAGCTG-TAC 1212
|||| |||| |||||||||||||||||||||| ||||| || || ||||||| || |||
Sbjct 1109 -TGTGTCGGG-AACTAGTTTATCGCAGGAGCAGCCGCGA-TTAGCAGTAAGAG-TGGTAC 1164
Query 1213 CTGCAAGTCCAGTTGGAGTGTTGGAAGCAACATGTTTGAGCTATAGGAGTGAAGAGAGAA 1272
| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1165 CGGCAAGTCCAATTGGAGTGTTGGAAGCAACATGTTTGAGCTATAAGAGTGAAGAGAGAA 1224
Query 1273 CAGTTGAGTCATGTACAAATTCCTCACAGAGTAGTCCAGacaacaacaacaacaacaaca 1332
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1225 CAGTTGAGTCATGTACAAATTCCTCACAGAGTAGTCCAGACAACAACAACAATA------ 1278
Query 1333 acagcaacaaGAGGAGGAGAAAACAATGAGAGAGAATAAAAGAGTCATACATTGCTTTTT 1392
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1279 ---GCAACAAGAGGAGGAGAAAACAATGAGAGAGAATAAAAGAGTCATACATTTCTTTT- 1334
Query 1393 ACAACCCAAAACCACAAGTACTCATGACATTTGAGGTTCTTAtttatttttttggttttt 1452
||||| |||| ||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1335 ACAACTCAAATCCACAAGGACTCATGACATTTGAGGTTCTTATTT-TTTTTTT------- 1386
Query 1453 tttttctacataaattttctttttctttctttgatttctcattttcAATCTGAAAATTGG 1512
||||| ||| |||||||| || |||||||||||||||||||||||| ||||||||
Sbjct 1387 -----CTACAGAAAATTTCTTTT-CTCTCTTTGATTTCTCATTTTCAATCTAAAAATTGG 1440
Query 1513 ATTG-AATATGAGAGTTTTGTGAGAAAGGAAAAAAGAAAATAagagagagagagagagCT 1571
|||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1441 ATTGGAA-ATGAGAGTTTTGTGAGAGGGGAAAAAAGAAAATAAGAGAGAGAGAGAGAGCT 1499
Query 1572 CTTTGG-AA-GGCGGCAAAATTAATAAGTCATTATTGATGATGATGAGAGACATCCCT-G 1628
||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1500 CTTACATAAAGGCGGCAAAATTAATAAGTCATTATTGATGATGATGAGAGACATCCCTAG 1559
Query 1629 TTC-T-T----GCTCCAAGGGACtttttttttt-------CTACATAATGTCAGAGATAT 1675
||| | | |||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1560 TTCATGTTCTTGCTCCAAGGGACTTTTTTTTTTTTTTTTTCTACAGAATGTCAGAGATAT 1619
Query 1676 AATTaaaaa 1684
|||||||||
Sbjct 1620 AATTAAAAA 1628
Score = 331 bits (179), Expect = 9e-90
Identities = 207/219 (95%), Gaps = 8/219 (4%)
Strand=Plus/Plus
Query 5 GGAGTGGTCTCTCCCCTCTCTACCCTAAAACACACTCACCCACTTTCCTCTGTAT-AA-G 62
||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1 GGAGTGGTCGCTCCCCTCTCTACCCT-AAACACACTCACCCACTTTCCTCTGTATAAACC 59
Query 63 Cctctctctcctctctcttctcct-ctGCCATGAAAATCGCAGTTCCTCAAGACAAAACC 121
||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||
Sbjct 60 CCTCTCTCTCCTCTCTCTTCT-CTCCTGCCATGAAAATCGCAGTTCCTCGAGACAAAACC 118
Query 122 TCCTCAGAAATCTCCCATCTTTGATGACTTTTGCTTCCTTAGTTTTCACTTT-CTTGTCC 180
|||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||
Sbjct 119 TCCTCAGAAATCTCCCATCTCTGATGACTTTTGCTTCCTTAGTTTTCACTTTACT-GTCC 177
Query 181 GAACGCTCTCAAAAACTTTGAGACCACCCCAATAAACGA 219
|||||||||||||||||||||||| ||||||||||||||
Sbjct 178 GAACGCTCTCAAAAACTTTGAGAC-ACCCCAATAAACGA 215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64334423805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5