BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22500.1
Length=1528
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481111 jgi|Araly1|481111|fgenesh2_kg.4__171__AT2G22500.1 1967 0.0
Ahg945643 jgi|Araly1|945643|scaffold_701872.1 191 1e-47
Ahg892856 jgi|Araly1|892856|Al_scaffold_0006_852 84.2 3e-15
> Ahg481111 jgi|Araly1|481111|fgenesh2_kg.4__171__AT2G22500.1
Length=1413
Score = 1967 bits (1065), Expect = 0.0
Identities = 1317/1432 (92%), Gaps = 43/1432 (3%)
Strand=Plus/Plus
Query 64 TTATGTCTCAAAGATCTCTGATTCCTCATTCTTCTTCTATAGCTTTTGGTCTCCATTCTC 123
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 TTATGTCTCAAAGACCTCTGATTCCTCATTCTTCTTCTATAGCTTTTGGTCTCCATTCTC 61
Query 124 ATCTCTTAATCTCCAGTGAGATCAGCTCCAATTCTAACTGGTCTCTCT-----aaataaa 178
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 62 ATCTCTTAATCTCCAGTGAGATCAGCTCTAATTCTAACTGGTCTCTCTAAGAAAAATAAA 121
Query 179 -a-aa--cagaaataaaaatccaacctttttcaatttt--cgttcaattttcccggaaaa 232
| || || ||||||||||| ||||||||| |||| | ||| |||||||||| ||
Sbjct 122 CACAACCCAAAAATAAAAATCTAACCTTTTT--TTTTTAACTTTCTATTTTCCCGG--AA 177
Query 233 aaaaGCGATCCTTTTGATTTTTCGATTTCTCCAAGTAACAATTCAAAATGGGTCTAAAGG 292
||||| ||| | || ||||||||||| | | | | | ||||||||||||| ||||
Sbjct 178 AAAAGGGAT-C--TT--TTTTTCGATTT-T-CGA-TTTC---TCAAAATGGGTCTCAAGG 226
Query 293 GTTTTGCTGAAGGAGGAATAGCTTCGATTGTTGCGGGTTGTTCGACCCACCCGCTTGATC 352
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 227 GTTTTGCTGAAGGAGGAATCGCTTCAATTGTTGCGGGTTGTTCGACCCACCCGCTTGATC 286
Query 353 TAATCAAGGTCCGAATGCAACTTCAAGGCGAATCAGCTCCGATTCAAACCAATCTCCGAC 412
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 287 TAATCAAGGTCCGAATGCAACTTCAAGGCGAATCAGCTCCGATTCAGACCAATCTCCGAC 346
Query 413 CAGCTCTTGCTTTTCAGACTTCGACCACCGTCAACGCGCCTCCTCTACGTGTTGGTGTAA 472
|||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 347 CAGCTCTTGCCTTTCAAACTTCGACCACCGTCAACGCGCCTCCTCTACGCGTTGGTGTAA 406
Query 473 TCGGAGTCGGATCTCGTTTAATAAGAGAAGAAGGCATGCGTGCTCTGTTTTCCGGCGTCT 532
|||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||
Sbjct 407 TCGGAGTCGGATCTCGTTTAATCCGTGAAGAAGGCTTGCGTGCTCTGTTTTCCGGCGTCT 466
Query 533 CCGCCACCGTTCTTCGTCAAACTCTGTATTCAACGACTCGTATGGGTTTATACGACATCA 592
||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 467 CCGCCACCGTTCTCCGTCAAACTCTGTATTCAACGACTCGTATGGGTTTATATGATATCC 526
Query 593 TCAAAGGAGAATGGACCGACCCGGAAACAAAAACGATGCCTTTAATGaaaaaaaTCGGTG 652
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 527 TCAAAGGAAAATGGACCGACCCGGAAACAAAAACGATGCCTTTAACAAAAAAAATCGGTG 586
Query 653 CCGGAGCCATCGCCGGAGCAATCGGAGCCGCCGTTGGGAATCCTGCTGACGTGGCGATGG 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 CCGGAGCCATCGCCGGAGCAATCGGAGCCGCCGTTGGGAATCCTGCTGACGTGGCGATGG 646
Query 713 TGAGGATGCAAGCCGATGGTCGTTTACCGTTGACTGATAGAAGAAACTACAAAAGCGTTT 772
| |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||
Sbjct 647 TTAGGATGCAAGCCGATGGTCGTTTACCGTTGGCTGAGAGAAGAAACTATAAAAGCGTTT 706
Query 773 TAGACGCGATCACGCAAATGATTCGCGGTGAAGGCGTTACGTCGTTGTGGAGAGGATCGT 832
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 707 TAGACGCGATCACGCAAATGATTCGCGGTGAAGGCGTTACGTCTTTGTGGAGAGGATCGT 766
Query 833 CTTTGACGATAAACAGAGCAATGCTTGTGACGTCATCGCAGTTGGCTTCGTATGATTCTG 892
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 767 CTTTGACGATAAACAGAGCAATGCTTGTGACGTCATCGCAGTTAGCTTCGTATGATTCTG 826
Query 893 TTAAAGAGACGATTTTGGAGAAAGGGTTGTTGAAAGATGGGCTTGGGACTCATGTGTCGG 952
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||
Sbjct 827 TTAAAGAGACGATTTTGGAGAAAGGGTTGTTGGAAGATGGGCTTGGGACTCATGTTTTGG 886
Query 953 CGAGTTTCGCGGCGGGGTTTGTTGCGAGCGTTGCGA-GTAATCCTGTTGATGTGATTAAG 1011
|||||||||| || |||||||| ||| |||||| | ||||| |||||||||||||||
Sbjct 887 CGAGTTTCGCTGCTGGGTTTGTAGCGTCCGTTGCTTCG-AATCCGGTTGATGTGATTAAG 945
Query 1012 ACGAGAGTGATGAATATGAAGGTGGTGGCTGGAGTTGCTCCGCCGTATAAAGGAGCGGTT 1071
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 946 ACGAGAGTGATGAATATGAAGGTGGTGGCTGGAGTTGCACCGCCGTATAAAGGAGCGGTA 1005
Query 1072 GATTGTGCTTTGAAAACGGTGAAAGCGGAAGGGATTATGTCTTTGTATAAAGGTTTTATC 1131
||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||| |
Sbjct 1006 GATTGTGCTTTGAAAACGGTGAAAGCGGAAGGGATTATGGCTTTATATAAAGGATTTGTG 1065
Query 1132 CCGACGGTTTCGAGACAAGCACCGTTCACGGTGGTTTTGTTTGTTACGCTTGAACAAGTT 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 CCGACGGTTTCGAGACAAGCACCGTTCACGGTGGTTTTGTTTGTTACGCTTGAACAAGTT 1125
Query 1192 AAG-AAGTTGTTCAAGGACTATGACTTTTGaaaaaaaCAAGAGTTGAATTAT-GTTGAAG 1249
| ||| |||| ||||||||||||||||||| || ||||||||||||||| | ||||
Sbjct 1126 C-GCAAGGTGTTTAAGGACTATGACTTTTGAATAA--CAAGAGTTGAATTATTGAAGAAG 1182
Query 1250 A--A-GATGAATGATGGTGGCGACAATAAGCTTCTCttttt-ttCTGGTTATAATTTTCT 1305
| | ||||||||||| ||||||||||||| || | ||||| || ||||||||||||||
Sbjct 1183 ACGATGATGAATGATGTTGGCGACAATAAGATTTTTTTTTTCTTTTGGTTATAATTTTCA 1242
Query 1306 TTTGATTATTTGAGTAGTTTTAAATTGTTTCCCATTTGTTGGAATAGATCTATGATATGA 1365
|||||||| | ||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1243 TTTGATTAATCGAGTAGTTTTAAATTGTTTTCCATTTGTTCGAATAGATCTATGATATGA 1302
Query 1366 TAATT-CTTCTCATG----GAGAAGAAAGAAAGAAAGAAACAGTTCATTTGATTCATTAT 1420
|||| ||||||||| ||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1303 -AATTTCTTCTCATGACTTGAGAAGAGAGAACGAAAGAAACAGTTCATTTGATTCATTAT 1361
Query 1421 TCAAGGCAGTGAAATACTTAGATTCGTTTATGTTAATTTTGAACTATGTAAT 1472
|||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1362 TCAAGGCAGTGAAATATTTAGATTCGTTTATGTTAATTTTGAACTATGTAAT 1413
> Ahg945643 jgi|Araly1|945643|scaffold_701872.1
Length=993
Score = 191 bits (103), Expect = 1e-47
Identities = 308/404 (76%), Gaps = 26/404 (6%)
Strand=Plus/Plus
Query 646 ATCGGTGCCGGAGCCA-TCGCCGGAGCAATCGGAGCCGCCGTTGGGAATCCTGCTGACGT 704
|||||||| || || | |||| |||| ||||||||||||||||| ||||| ||||||||
Sbjct 418 ATCGGTGCAGG-GCTAGTCGCTGGAGGTATCGGAGCCGCCGTTGGAAATCCAGCTGACGT 476
Query 705 GGCGATGGTGAGGATGCAAGCCGA-TGGTCGTTTACCGTTGA-CTG-ATAGAAGAAACTA 761
||||||||| ||||||||||| || || | || || || | | | | | | |||||
Sbjct 477 GGCGATGGTTAGGATGCAAGCTGACGGGAGGCTT-CC-TTTAGC-GCAGCGTCGTAACTA 533
Query 762 CAAAAGCGTTTTAGACGCGATCACGCA-AATGATT-CGCGGTGAAGGCGTTACGTCG-TT 818
| | || |||||| |||| | | ||| || | || |||||||| ||| | ||
Sbjct 534 CGCCGGAGTAGGAGACGCAATCAAG-AGCATGGTTAAG-GGAGAAGGCGTAACG-AGCTT 590
Query 819 GTGGAGAGGATCGTCTTTGACGATAAACAGAGCAATGCTTGTGACGTCATCGCAGTTGGC 878
||| | || ||| | |||||||| ||| |||| ||| |||||||| | | ||| | ||
Sbjct 591 ATGGCGTGGCTCGGCGTTGACGATTAACCGAGCCATGATTGTGACGGCGGCTCAGCTAGC 650
Query 879 TTCGTATGATTCTGTT-AAAG-AGACGATTTTGGAGAAAGGGT-TGTTGAAAGATGGGCT 935
||||| || || ||| || | || ||| |||||| || ||| || |||| |||||| |
Sbjct 651 GTCGTACGA-TCAGTTCAAGGAAG-GGATATTGGAG-AATGGTGTGATGAAGGATGGG-T 706
Query 936 T-GGGACTCATGT-GTCGGCGAGTTTCGCGGCGGGGTTTGTTGCGAGC-GTTGCGAGTAA 992
| |||||||| || || |||||||||||| |||||||||||||| | || ||| |||
Sbjct 707 TAGGGACTCACGTGGT-GGCGAGTTTCGCCGCGGGGTTTGTTGC-TTCGGTGGCGTCTAA 764
Query 993 TCCTGTTGATGTGATTAAGACGAGAGTGATGAATATGAAGGTGG 1036
||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 765 TCCGGTGGATGTGATAAAGACGAGAGTGATGAATATGAAGGTGG 808
> Ahg892856 jgi|Araly1|892856|Al_scaffold_0006_852
Length=1017
Score = 84.2 bits (45), Expect = 3e-15
Identities = 90/112 (80%), Gaps = 2/112 (2%)
Strand=Plus/Plus
Query 660 CATCGCCGGAGCAATCGGAGCCGCCGTTGGGAATCCTGCTGACGTGGCGATGGTGAGGAT 719
||| |||||||| | ||| | | || ||||||||||||||||||||||||||||| ||
Sbjct 468 CATAGCCGGAGCCGTTGGATCAGTAGTAGGGAATCCTGCTGACGTGGCGATGGTGAGAAT 527
Query 720 GCAAGCCGATGGTCGTTTACCGTTGA-CTGATAGAAGAAACTACAAAAGCGT 770
||||||||| || | || ||||| | | | | | ||||||||||| |||||
Sbjct 528 GCAAGCCGACGGAAGCTTGCCGTTAAACCG-TCGCAGAAACTACAAGAGCGT 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57211547990
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5