BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G22510.1

Length=733
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932214 jgi|Araly1|932214|scaffold_400202.1                        686    0.0  


> Ahg932214 jgi|Araly1|932214|scaffold_400202.1
Length=417

 Score =  686 bits (371),  Expect = 0.0
 Identities = 400/414 (97%), Gaps = 1/414 (0%)
 Strand=Plus/Plus

Query  37   CTCAAACCCCTAATC-CCCAAAATGGCTCACTGGTTGTCATCCCTAGTCATTGCATTAAC  95
            |||||| |||||||| || ||||||||||| ||||| |||||||| ||||| ||||||||
Sbjct  1    CTCAAAACCCTAATCTCCAAAAATGGCTCAGTGGTTATCATCCCTTGTCATCGCATTAAC  60

Query  96   ATTCACAAGCTTTTTCACTGGTCTCTCAGCTAGTCGCCACCTTCTTCAATCAACACCAGC  155
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATTCACAAGCTTTTTCACTAGTCTCTCAGCTAGTCGCCACCTTCTTCAATCAACACCAGC  120

Query  156  TATTACCCCACCGGTTACAACAACATTTCCACCACTTCCCACAACCACAATGCCACCATT  215
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  TATTACCCCACCGGTTACAACAACATTTCCACCACTTCCCACAACCACAATGCCACCATT  180

Query  216  TCCTCCTTCAACTTCTCTTCCTCAGCCAACTGCGTTTCCGCCATTACCAAGCTCACAAAT  275
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  181  TCCTCCTTCAACTTCTCTTCCTCAGCCAACTGCGTTTCCGCCATTACCGAGCTCACAAAT  240

Query  276  ACCTTCTTTACCTAACCCAGCACAACCCATTAATATCCCAAACTTCCCACAAATCAATAT  335
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  ACCTTCTTTGCCTAACCCAGCACAACCCATTAATATCCCAAACTTCCCACAAATCAATAT  300

Query  336  CCCTAACTTCCCAATTTCTATCCCAAACAACTTCCCATTCAATCTTCCCACCAGCATTCC  395
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  301  CCCTAACTTCCCAATTTCTATCCCAAACAACTTCCCATTCAATCTTCCCACCAGCATACC  360

Query  396  AACAATCCCATTCTTCACTCCACCACCTTCCAAATGAGAAGCTAATTAAGCTCT  449
            ||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct  361  AACCATCCCATTCTTCACTCCACCACCTTCCAAATGAGAAGCGAAATAAGCTCT  414



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26991025236


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5