BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22540.1
Length=1556
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481114 jgi|Araly1|481114|fgenesh2_kg.4__174__AT2G22540.1 1325 0.0
> Ahg481114 jgi|Araly1|481114|fgenesh2_kg.4__174__AT2G22540.1
Length=1194
Score = 1325 bits (717), Expect = 0.0
Identities = 793/829 (96%), Gaps = 8/829 (1%)
Strand=Plus/Plus
Query 497 AAACCTAAGCTCTCTCTCTTGCTTCTAGGGtttttttGTTCGTTGTGATGGCGAGAGAAA 556
||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||||
Sbjct 370 AAACCTAAGCTCTCT-TCTTGCTTCTAGGG-GTTTTTCTT-GTTGTGATGGCGAGAGAAA 426
Query 557 AGATTCAGATCAGGAAGATCGACAACGCAACGGCGAGACAAGTGACGTTTTCGAAACGAA 616
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 427 AGATTCAGATCAGAAAGATCGACAACGCGACGGCGAGACAAGTGACGTTTTCGAAACGAA 486
Query 617 GAAGAGGGCTTTTCAAGAAAGCTGAAGAACTCTCCGTTCTCTGCGACGCCGATGTCGCTC 676
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 487 GAAGAGGGCTTTTCAAGAAAGCTGAAGAGCTCTCCGTTCTCTGCGACGCCGATGTTGCTC 546
Query 677 TCATCATCTTCTCTTCCACCGGAAAACTGTTCGAGTTCTGTAGCTCCAGCATGAAGGAAG 736
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 547 TCATCATCTTCTCTTCCACCGGAAAACTCTTCGAGTTCTGTAGCTCCAGCATGAAGGAAG 606
Query 737 TCCTAGAGAGGCATAACTTGCAGTCAAAGAACTTGGAGAAGCTTGATCAGCCATCTCTTG 796
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 607 TCCTAGAGAGGCATAACTTGCAGTCAAAGAATTTGGAGAAGCTTGATCAGCCATCTCTTG 666
Query 797 AGTTACAGCTGGTTGAGAACAGTGATCACGCCCGAATGAGTAAAGAAATTGCGGACAAGA 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGTTACAGCTGGTTGAGAACAGTGATCACGCCCGAATGAGTAAAGAAATTGCGGACAAGA 726
Query 857 GCCACCGACTAAGGCAAATGAGAGGAGAGGAACTTCAAGGACTTGACATTGAAGAGCTTC 916
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 727 GCCACCGACTAAGGCAAATGAGAGGAGAGGAACTTCAAGGACTTGACATTGAAGAGCTGC 786
Query 917 AGCAGCTAGAGAAGGCCCTTGAAACTGGTTTGACGCGTGTGATTGAAACAAAGAGTGACA 976
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 787 AACGGCTAGAGAAGGCCCTTGAAACTGGTTTGACGCGTGTGATTGAAACAAAGAGTGGCA 846
Query 977 AGATTATGAGTGAGATCAGCGAACTTCAGAAAAAGGGAATGCAATTGATGGATGAGAACA 1036
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 847 AGATTATGAATGAGATCAGCGAACTTCAGAGAAAGGGAATGCAATTGATGGATGAGAACA 906
Query 1037 AGCGGTTGAGGCAGCAAGGAACGCAACTAACGGAAGAGAACGAGCGACTTGGCATGCAAA 1096
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 907 AGCGGTTGAGGCAGCAAGGAACGCAACTATCGGAAGAGAACGAGCGACTTGGCATGCAAA 966
Query 1097 TATGTAACAATGTGCATGCACACGGTGGT---GCTGAATCGGAGAACGCTGCTGTGTACG 1153
|||| || |||||||||| | |||||||| |||||||| |||||||| ||||||||||
Sbjct 967 TATGGAATAATGTGCATGAATACGGTGGTACCGCTGAATCTGAGAACGCCGCTGTGTACG 1026
Query 1154 AGGAAGGACAGTCGTCGGAGTCTATTACTAACGCCGGAAACTCTACCGGAGCGCCTGTTG 1213
|||||||||| ||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct 1027 AGGAAGGACACTCGTCGGAGTCTATTACTAACGCTGGAAACTCCACCGGAGCACCTGTTG 1086
Query 1214 ACTCCGAGAGCTCCGACACTTCCCTTAGGCTCGGCTTACCGTATGGTGGTTAGAGATGGA 1273
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1087 ACTCCGAGAGCTCCGATACATCCCTTAGGCTCGGCTTACCGTATGGTGGTTAGAGATGGG 1146
Query 1274 ACAATTCAAAGAAGTTGATGGA-GTGAGGAGAGTAATGTAAATCTTTTT 1321
|||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1147 ACAATTCAAAGAAGTTGATGGACG-GAGGAGAGTAATGTAAATCTTTTT 1194
Score = 307 bits (166), Expect = 1e-82
Identities = 201/216 (93%), Gaps = 10/216 (5%)
Strand=Plus/Plus
Query 199 TTCTTTCTTTCAAATCTTTCAAAAACTAGGGTTTTTACTGTCTTGAAATCATATTTATTC 258
|||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 128 TTCTTTCTTTCAAATCCTTCAAAAACTAGGGTTTTTACTGTCTTCAAACCATATTTATTC 187
Query 259 TTCTAAATTTAGCAAAAAGAACACGATTTACTTTCCATTTCAGTCGTCTTGTCActctct 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 TTCTAAATTTAGCAAAAAGAACACGATTTACTTTCCATTTCAGTCGTCTTGTCACTCTCT 247
Query 319 ctctcttctttaaagtctccctttttagcaaaaa-ttctctctctcacaaaatttatttc 377
|||| | ||||||||||||||||||||||||||| |||||||||||||||| ||| | |
Sbjct 248 CTCT-T-CTTTAAAGTCTCCCTTTTTAGCAAAAAATTCTCTCTCTCACAAA-TTT-T--C 301
Query 378 ctctggcttcttcttcctcctcctccatctc-ttct 412
|||||| ||||||||||||||| || |||| ||||
Sbjct 302 CTCTGGGTTCTTCTTCCTCCTCATC--TCTCATTCT 335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58278074850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5