BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22570.1
Length=937
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932220 jgi|Araly1|932220|scaffold_400208.1 1229 0.0
> Ahg932220 jgi|Araly1|932220|scaffold_400208.1
Length=777
Score = 1229 bits (665), Expect = 0.0
Identities = 734/768 (96%), Gaps = 2/768 (0%)
Strand=Plus/Plus
Query 23 CTCGTATCGATATGGCGAATCATGAAACGATATTTGATCAGCTAAAGAAGCAGATTCCAG 82
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 12 CTCGTATCGATATGGCGAATCATGAAACGATATTCGATCATCTAAAGAAGCAGATACCAG 71
Query 83 TAGATGAGGAAGAACCTCTGATTTTGAATCGAGACTCAAGCGTTGGTCTCGTCATCGTTG 142
| ||||| |||||| |||| | ||||||||||||||| ||||||||||||||||||||||
Sbjct 72 TGGATGAAGAAGAATCTCTCAATTTGAATCGAGACTCGAGCGTTGGTCTCGTCATCGTTG 131
Query 143 ACGTTGTTAATGGCTTCTGCACAATTGGCTCCGGCAATATGGCTCCAACAAAGCATAATG 202
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 132 ACGTTGTTAATGGCTTCTGCACAATTGGCTCCGGCAATATGGCTCCTACAAAGCATAATG 191
Query 203 AACAGATATCGAAGATGGTGGAGGAAAGTGCAAAGCTTGCTAGAGAGTTCTGTGATCGGA 262
|||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 192 AACAAATATCGAAAATGGTGGAGGAAAGTGCAAAGCTTGCTAGAGAATTCTGTGATCGGG 251
Query 263 AATGGCCGGTTTTGGCGTTTATTGACTCTCATCATCCAGATATTCCGGAGAGACCTTATC 322
|||||||||||||||| |||||||||||||||||||| |||||||| |||| ||||||||
Sbjct 252 AATGGCCGGTTTTGGCCTTTATTGACTCTCATCATCCGGATATTCCTGAGATACCTTATC 311
Query 323 CTCCTCATTGTATTATAGGAACTGAAGAATCAGAACTTGTTCCTGCTCTGAAATGGCTTG 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 CTCCTCATTGTATTATAGGAACTGAAGAATCAGAACTTGTTCCTGCTCTGAAATGGCTTG 371
Query 383 AAAGTGAGGATTGTGCCACTCTTAGACGAAAGGATTGTATTAATGGGTTTGTGGGTTCGA 442
|||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 372 AAAGTGAGAACTGTGCCACTCTTAGACGAAAGGATTGTATTGATGGGTTTGTGGGTTCGA 431
Query 443 TGGAGAGTGATGGTTCTAATGTTTTTGTGGATTGGGTTAAGGAAAAACAGATCAAAGTTA 502
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 TGGAGAAAGATGGTTCTAATGTTTTTGTGGATTGGGTTAAGGAAAAACAGATCAAAGTTA 491
Query 503 TTGTCGTTGTAGGTATCTGTACAGACATATGTGTGTTTGATTTTGTGGCTACTGCACTTT 562
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 492 TTGTGGTTGTAGGTATCTGTACAGACATATGTGTGTTTGATTTTGTGGCTACTGCACTGT 551
Query 563 CTGCCCGAAACCACGGTGTTCTTTCTCCTGTAGAAGATGTGGTAGTGTACTCCCGTGGCT 622
||||||||||||||||||||||||||||| ||||||| |||||||| ||||| |||||||
Sbjct 552 CTGCCCGAAACCACGGTGTTCTTTCTCCTCTAGAAGACGTGGTAGTTTACTCGCGTGGCT 611
Query 623 GTGCTACTTTTGACCTTCCTCTTCATGTTGCGAAAGACATCAAAGGCGCTCAGGCTCATC 682
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 612 GCGCTACTTTTGACCTTCCTCTTCATGTTGCGAAAGATATCAAAGGCGCTCAGGCTCATC 671
Query 683 CTCAGGAGTTGATGCACCATGTAGGTCTATATATGGCTAAAGGAAGAGGAGCTCAGGTAG 742
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 672 CTCAGGAGTTGATGCACCATGTAGGTCTATATATGGCTAAAGGAAGAGGAGCTAAGGTAG 731
Query 743 TCTCTAAAATTTCTTTTGAGACTTGAAAGACTATATCTCGTTTATAAA 790
|||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 732 TCTCTAAAATTTCTTTTGAGACTTGAAAGACTAT--CTCGTTTATAAA 777
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34768100304
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5