BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22590.1
Length=1540
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481118 jgi|Araly1|481118|fgenesh2_kg.4__178__AT2G22590.1 1199 0.0
Ahg930477 jgi|Araly1|930477|scaffold_302934.1 265 9e-70
> Ahg481118 jgi|Araly1|481118|fgenesh2_kg.4__178__AT2G22590.1
Length=1479
Score = 1199 bits (649), Expect = 0.0
Identities = 772/831 (93%), Gaps = 9/831 (1%)
Strand=Plus/Plus
Query 710 TATGAAGCGGAGTGGTTAGGACTTACACAAGAACTTCACCGGAAACCGGTTATACCGGTC 769
|||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 650 TATGAAGCAGAGTGGTTAGGACTTATACAAGATCTTCACCGGAAACCGGTTATACCGGTG 709
Query 770 GGAGTTTTGCCTCCAAAACCGGACGAAAAGTTTGAAGATACCGACACGTGGCTGTCTGTT 829
|||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 710 GGAGTTTTACCTCCAAAACCGGAAGAAAAGTTTGAAGATACCGACACGTGGCTGACTGTT 769
Query 830 AAAAAATGGTTGGACTCACGGAAAAGTAAGTCCATTGTCTACGTAGCTTTTGGTTCAGAA 889
||||| |||||||||| |||||||||||||||| |||| |||||||||||||||||||||
Sbjct 770 AAAAAGTGGTTGGACTTACGGAAAAGTAAGTCCGTTGTTTACGTAGCTTTTGGTTCAGAA 829
Query 890 GCTAAACCGAGTCAAACGGAGCTAAATGAGATCGCTCTCGGTTTAGAGCTTTCTGGTTTA 949
||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||
Sbjct 830 GCTAAACCGAGTCAAACGGAGCTGAATGAGATAGCTCTCGGTTTAGAGCTTTCCGGTTTA 889
Query 950 CCTTTCTTTTGGGTGTTAAAGACTCGTCGTGGTCCGTGGGATACCGAACCGGTCGAGCTT 1009
|||||||| ||||||||||||| ||| |||||||||||||||||||||||||| ||||||
Sbjct 890 CCTTTCTTCTGGGTGTTAAAGAATCGGCGTGGTCCGTGGGATACCGAACCGGTTGAGCTT 949
Query 1010 CCGGAAGGATTCGAAGAGCGTACAGCGGATAGAGGGATGGTGTGGAGAGGTTGGGTTGAG 1069
| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 950 CTAGAAGGATTCGAGGAGCGTACAGCGGATAGAGGTATGGTGTGGAGAGGTTGGGTTGAG 1009
Query 1070 CAATTGCGTACATTGAGCCATGACTCGATCGGTTTGGTTCTGACTCATCCCGGTTGGGGA 1129
|||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1010 CAATTGAGAACATTGAGCCATGACTCGATCGGTTTGGTTCTAACTCATCCCGGTTGGGGA 1069
Query 1130 ACGATAATTGAAGCTATCCGGTTTGCTAAACCGATGGCAATGCTGGTTTTTGTGTATGAC 1189
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1070 ACGATAATTGAAGCTGTCCGGTTTGCTAAACCGATGGCAATGCTGGTTTTTGTGTACGAC 1129
Query 1190 CAAGGATTGAATGCGAGAGTCATTGAAGAGAAGAAAATTGGGTATATGATCCCTCGAGAC 1249
|||||||| ||||||||||| || ||||||||||||||||| |||||||||||||| ||
Sbjct 1130 CAAGGATTAAATGCGAGAGTAATCGAAGAGAAGAAAATTGGTTATATGATCCCTCGGGAT 1189
Query 1250 GAGACAGAAGGTTTCTTTACTAAAGAAAGTGTTGCGAATTCGCTAAGATTGGTAATGGTG 1309
|| ||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
Sbjct 1190 GAAACAGAAGGTTTCTTTACTAAAGAAAGTGTTGCGAAATCACTAAGATTGGTAATGGAG 1249
Query 1310 GAAGAAGAAGGAAAGGTTTATAGAGAGAATGTGAAGGAGATGAAAGGAGTGTTTGGAGAT 1369
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1250 GAAGACGAAGGAAAGGTTTATAGAGAGAATGTGTAGGAGATGAAAGGAGTGTTTGGAGAC 1309
Query 1370 ATGGATAGACAAGATCGTTATGTGGATTCATTCTTGGAATATCTTGTTACTAATCGTTAA 1429
|||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1310 ATGGATAGACAAGATCATTATGTGGATTCATTCTTGGATTATCTTGTTGCTAATCGTTAA 1369
Query 1430 CTTTGAG--T-----CTTGATCCAATGGTCGG-TTAATTGAGTGAAGTTGATCAAGTGTT 1481
|||||| | ||||||||||||| ||| |||||||| |||| |||||||||||||
Sbjct 1370 GTTTGAGCATGGAGTCTTGATCCAATGG-CGGGTTAATTGAATGAATTTGATCAAGTGTT 1428
Query 1482 GCAAGGATGATCATTGTATAATGTTATGATATTTTGGAATGGTCAAGTTTT 1532
|||| |||||||| |||||||| ||||||| ||||||||||||||||||||
Sbjct 1429 GCAACGATGATCAATGTATAATATTATGATGTTTTGGAATGGTCAAGTTTT 1479
Score = 435 bits (235), Expect = 6e-121
Identities = 257/268 (96%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 158 TCCACTCCACGTAACATCGACCGTCTCCTCCCACGGTTACCGGAAAATCTCTCCTCCGTC 217
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||
Sbjct 200 TCCACTCCACGTAACATCGATCGTCTCCTCCCACGGTTGCCGGAAAATCTCTCCTCCATC 259
Query 218 ATTAACTTCGTCAAGCTATCACTTCCCGTCGGCGACAACAAACTCCCGGAAGACGGTGAA 277
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 260 ATTAACTTCGTCAAGCTCCCACTTCCCGTCGGCGACAATAAACTCCCGGAAGACGGTGAA 319
Query 278 GCTACCACAGACGTCCCTTTCGAACTCATACCTTACTTAAAAATCGCTTACGACGGGTTA 337
|||||||| ||||| |||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 320 GCTACCACCGACGTGCCTTTCGAACTCATACCTTACTTAAAAATCGCTTTCAACGGGTTA 379
Query 338 AAAGTTCCGGTGACGGAGTTTCTTGAATCTTCGAAACCCGATTGGGTTCTTCAAGATTTC 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 AAAGTTCCGGTGACGGAGTTTCTTGAATCTTCGAAACCCGATTGGGTTCTTCAAGATTTC 439
Query 398 GCGGGGTTTTGGCTTCCTCCAATCTCTC 425
|||| |||||||||||||||||||||||
Sbjct 440 GCGGCGTTTTGGCTTCCTCCAATCTCTC 467
> Ahg930477 jgi|Araly1|930477|scaffold_302934.1
Length=543
Score = 265 bits (143), Expect = 9e-70
Identities = 179/196 (91%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 864 TTGTCTACGTAGCTTTTGGTTCAGAAGCTAAACCGAGTCAAACGGAGCTAAATG-AGATC 922
|||||||||||| |||||||||||||||||||||||||||||| ||| ||||| | |||
Sbjct 58 TTGTCTACGTAGGTTTTGGTTCAGAAGCTAAACCGAGTCAAACCGAGATAAATTCA-ATC 116
Query 923 GCTCTCGGTTTAGAGCTTTCTGGTTTACCTTTCTTT-TGGGTGTTAAAGACTCGTCGTGG 981
|||||||||||||| ||||| ||||||||||| ||| ||||||||||||||||| |||||
Sbjct 117 GCTCTCGGTTTAGAACTTTCCGGTTTACCTTT-TTTCTGGGTGTTAAAGACTCGCCGTGG 175
Query 982 TCCGTGGGATACCGAACCGGTCGAGCTTCCGGAAGGATTCGAAGAGCGTACAGCGGATAG 1041
||||||||||||||| ||||| |||||||||||||||||||| |||||||| || || ||
Sbjct 176 TCCGTGGGATACCGAGCCGGTTGAGCTTCCGGAAGGATTCGAGGAGCGTACGGCTGAGAG 235
Query 1042 AGGGATGGTGTGGAGA 1057
||||||||||||||||
Sbjct 236 AGGGATGGTGTGGAGA 251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57668630930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5