BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22620.1
Length=2444
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481121 jgi|Araly1|481121|fgenesh2_kg.4__181__AT2G22620.1 3443 0.0
Ahg944044 jgi|Araly1|944044|scaffold_700273.1 675 0.0
> Ahg481121 jgi|Araly1|481121|fgenesh2_kg.4__181__AT2G22620.1
Length=2358
Score = 3443 bits (1864), Expect = 0.0
Identities = 2123/2246 (95%), Gaps = 26/2246 (1%)
Strand=Plus/Plus
Query 164 AAGAGAGAGATTACCTTCTTCATAGGAAAAGATTTCTTTCTTCTTCTGCATTCCCCAAAT 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 118 AAGAGAGAGATTACCTTCTTCATAGGAAAAGATTTCTTTCTTCTTCTGCATTCCTCAAAT 177
Query 224 TTTATCTTCCCAAGAAACCCAACACAGAAGAAAATCTTAAAGTGAATTGTGGTGGAGATG 283
|||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 178 TTTATCTTACCAAGAAACCCAAAACACAAGAAAATCTTAAAGTGAATTGTGGTGGAGATG 237
Query 284 AAAGTTGGAGCTCCGGC-AAGTAAGCCGGGTCGGATCATTGTTCAAGTTTttcttctaca 342
||||||||||||||||| || ||||||||||||||||||||| |||||| ||||||||||
Sbjct 238 AAAGTTGGAGCTCCGGCGAA-TAAGCCGGGTCGGATCATTGTGCAAGTTCTTCTTCTACA 296
Query 343 ---------acttcttcttcttcttcAAAGTGTTCATTCACAGAGATCACAAAACAAACT 393
||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 297 TCTTCTTCTTCTTCTTCTTCTTCTTCAAAGTGTTCATTCTCAGAGATCACAAAACAAACT 356
Query 394 TAACATCACAAAGCCTGGACAAAACATACCAGCCTTAACAGTTCAGCTAAGGAGAGTTGG 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TAACATCACAAAGCCTGGACAAAACATACCAGCCTTAACAGTTCAGCTAAGGAGAGTTGG 416
Query 454 CCATGAT---ACGGTGGTAGTTGATAATGGTATTGTCCAAGTTACTTTCTCGAACCCAGA 510
|||||| ||||||||| |||||||||||||||| |||||||||||||||| |||| |
Sbjct 417 TCATGATGACACGGTGGTAATTGATAATGGTATTGTTCAAGTTACTTTCTCGAGCCCACA 476
Query 511 AGGCTTAATAACTGGGATAAAATACCATGGTATCGATAATGTGTTGGACGACAAAATTGA 570
||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 477 AGGCTTAATTACTGGGATAAAATACCATGGTATCGACAATGTGTTGGACGACGAAATTGA 536
Query 571 TGATCGCGGGTATTGGGACGTAGTCTGGTATGAACCGGAAAAGAAA-CAGAAGACTGACA 629
||||| ||||||||||||||||||||||||||||||| ||||||| | | |||||||||
Sbjct 537 GGATCGTGGGTATTGGGACGTAGTCTGGTATGAACCGGGAAAGAAATC-GGAGACTGACA 595
Query 630 AATTAGAAGGAACTAAATTTGAAATTATAACTCAGAACGAAGAACAAATTGAAATTTCAT 689
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 596 AATTAGAAGGATCTAAATTTGAAATCATAACTCAGAACGAAGAACAAATTGAAATTTCAT 655
Query 690 TTACAAGAACGTGGACTATCTCTAGACGTGGCTCCTTGGTCCCCCTAAATGTAGATAAAA 749
|||||||||||||||| ||||| | ||| |||||||||||||||||||| ||||||||||
Sbjct 656 TTACAAGAACGTGGACCATCTCCAAACGAGGCTCCTTGGTCCCCCTAAACGTAGATAAAA 715
Query 750 GATATATTATTCGAAGTGGTGTGTCCGGATTATACATGTACGGTATATTGGAGAGGTTAG 809
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 716 GATATATTATTCGAAGTGGTGTCTCCGGAATATACATGTACGGTATATTGGAGAGGTTAG 775
Query 810 AAGGTTGGCCCGACGTGGACATGGACCAAATCAGGATTGTCTTCAAGCTCAACCCaaaaa 869
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 776 GAGGTTGGCCCGACGTGGACATGGACCAAATCAGGATTGTCTTCAAGCTCAACCCGAAAA 835
Query 870 aaTTTGATTTCATGGCGATATCCGATGATCGGCAGAGAAGCATGCCATCGATGGCAGATC 929
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 836 AATTTGATTTTATGGCGATATCCGATGATCGACAGAGAAGCATGCCATCGATGGCGGATC 895
Query 930 GAGAAAATTCTAAGTCATTAGCTTACAAAGAAGCTGTTCTTTTGACAAATCCAAGCAACC 989
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GAGACAATTCTAAGACATTAGCTTACAAAGAAGCTGTTCTTTTGACAAATCCAAGCAACC 955
Query 990 CTATGTTCAAAGGAGAGGTGGATGATAAGTATATGTACTCAATGGAAGACAAAGACAACA 1049
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 CTATGCTCAAAGGAGAGGTGGATGATAAGTATATGTACTCAATGGAAGACAAAGACAACA 1015
Query 1050 ATGTGCATGGTTGGATCTCATCAGACCCACCTGTTGGGTTTTGGATGATAACTCCGAGCG 1109
||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1016 ATGTGCATGGTTGGATCACATCGGACCCACCGGTTGGGTTTTGGATGATAACTCCGAGCG 1075
Query 1110 ATGAGTTCCGTCTTGGTGGCCCCATCAAGCAAGACCTCACCTCTCATGCCGGACCCATCA 1169
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1076 ATGAGTTCCGTCTTGGTGGCCCCATCAAGCAAGACCTCACCTCTCATGCTGGACCCATCA 1135
Query 1170 CACTCTCCATGTTTACGAGCACGCATTATGCGGGAAAAGAGATGAGAATGGATTATAGAA 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 CACTCTCCATGTTTACGAGCACGCATTATGCGGGAAAAGAGATGAGAATGGATTATAGAA 1195
Query 1230 ATGGAGAGCCATGGAAGAAAGTTTTTGGTCCTGTCTTGGCTTATCTCAACTCTGTCTCTC 1289
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1196 ATGGAGAGCCATGGAAGAAAGTTTTTGGTCCTGTCTTGGTTTATCTCAACTCTGTCTCTC 1255
Query 1290 CCAAAGATTCTACTCTTCGTCTCTGGAGAGATGCTAAACGACAGATGGCTGCAGAAGTCA 1349
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 CCAAAGAATCCACTCTTCGTCTCTGGAGAGATGCTAAACGACAGATGGCTGCAGAAGTCA 1315
Query 1350 AAAGCTGGCCTTATGATTTTATAACTTCAGAAGATTATCCTCTTCGCCATCAAAGAGGAA 1409
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1316 AAAGCTGGCCTTATGATTTTGTAACTTCAGAAGATTATCCTCTTCGTCATCAAAGAGGAA 1375
Query 1410 CTCTCGAAGGTCAATTCTTAATCAAAGACAGTTACGTGTCAAGGTTAAAGATATATGGAA 1469
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 CTATCGAAGGTCAATTCTTAATCAAAGACAGTTACGTGTCAAGGTTAAAGATATATGGAA 1435
Query 1470 AATTTGCTTTTGTTGGTTTGGCCCCAATTGGTGAAGCTGGTTCATGGCAAACCGAATCAA 1529
||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 1436 AATTTGCGTTTGTTGGTTTGGCACCAATTGGTGAAGCCGGTTCATGGCAAACCGAATCCA 1495
Query 1530 AGGGTTATCAATTTTGGACGAAAGCTGACAGGAGAGGGAGATTCATAATAGAGAATGTGA 1589
|||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1496 AGGGGTATCAATTTTGGACGAAAGCTGACAGAAAAGGGAGATTCATAATAGAGAATGTGA 1555
Query 1590 GGGCAGGCAATTATAGTCTCTACGCATGGGGGTCT-GGTTTTATTGGAGACTATAAGTAT 1648
|| |||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 1556 GGACAGGCAATTATAGTCTCTACGCATGGGG-TATTGGTTTTATTGGAGACTATAAGTAT 1614
Query 1649 GAGCAAAACATTACCATCACGCCAGGTAGCGAGATGAATGTAGGGCCTTTAGTGTATGAA 1708
||||||||||||| ||||||||||||||||||||| |||||||| ||| |||||||||||
Sbjct 1615 GAGCAAAACATTATCATCACGCCAGGTAGCGAGATAAATGTAGGACCTATAGTGTATGAA 1674
Query 1709 CCGCCGAGAAACGGTCCAACATTGTGGGAAATCGGTGTACCGGATCGAACCGCAGGTGAA 1768
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1675 CCGCCGAGAAACGGTCCAACATTGTGGGAAATCGGTGTACCGGATCGAACCGCGGGTGAA 1734
Query 1769 TTCTATATACCGGATCCTTACCCTACACTGATGAATAAGCTTTATGTCAACCCACTCCAA 1828
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||
Sbjct 1735 TTCTATATACCGGATCCTTATCCTACACTGATGAATAAGCTTTATGTTAACCCACTTCAA 1794
Query 1829 GACAGATTTAGGCAATATGGATTATGGGATCGTTACGCAGATTTATACCCTCAAAACGAT 1888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1795 GACAGATTTAGGCAATATGGATTATGGGATCGTTACGCAGATTTATACCCTCAAAACGAT 1854
Query 1889 CTTGTCTACACAATCGGTGTAAGTGATTATAGAAGTGATTGGTTCTTTGCACATGTGGCG 1948
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1855 CTTGTCTACACAATCGGTGTAAGTGATTATAGAAGAGATTGGTTCTTTGCACATGTCACG 1914
Query 1949 AGAAACGTTGGTAACGATACATACCAACCAACAACATGGCAAATCATATTCAACCTAAAA 2008
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1915 AGAAACTTTGGTAACGATACATACCAACCAACGACATGGCAAATCATATTCAACCTAAAA 1974
Query 2009 AACGTGAACCGTATCGGACGCTACACACTCCGAATAGCTCTAGCATCAGCAGCT-GATTC 2067
||||||||||| ||||||| ||||||||||||| |||||||||||||||| ||| | |||
Sbjct 1975 AACGTGAACCGGATCGGACTCTACACACTCCGACTAGCTCTAGCATCAGCCGCTAG-TTC 2033
Query 2068 GGAACTACAAATCCGAATCAACGATCCGAAATCCGATGCG-ATTTTCACAACCGGTTTTA 2126
||||||||||| |||||||||||||||||||||| | | ||||||||||||||||| |
Sbjct 2034 CGAACTACAAATTCGAATCAACGATCCGAAATCCGGT-CATATTTTCACAACCGGTTTAA 2092
Query 2127 TCGGAAAGGACAATGCGATCGCAAGACATGGAATTCATGGATTATATAGATTGTATAGTA 2186
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 2093 TCGGAAAGGACAATGCGATCGCGAGACATGGAATTCATGGGTTATATAGATTGTATAGTA 2152
Query 2187 TCGACGTTGCTGGAAATTTACTAAGTGTTGGTGATAATACAATATTTTTAACTCAAACCA 2246
||||| ||||||||||| ||||| ||||||||||||||||||||| |||||||||||| |
Sbjct 2153 TCGACATTGCTGGAAATCTACTACGTGTTGGTGATAATACAATATATTTAACTCAAACGA 2212
Query 2247 GAAGTAGAACACCATTTCAAGGTATTATGTATGACTATATTCGTCTTGAAAGTCCTTTTA 2306
|||||| | | ||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 2213 GAAGTATAGGAATGTTTCAAGGTGTTATGTATGATTATATTCGTCTTGAAAGTCCTTTTA 2272
Query 2307 GAACTTGAGAAAATAAATTGGATA-GAGTTAAAAATAATTTCA-TGTAGAAGAAGGTTTA 2364
|||||||| ||||||||||||||| ||||||||| |||||| | |||||||| |||||||
Sbjct 2273 GAACTTGAAAAAATAAATTGGATAAGAGTTAAAA-TAATTT-AGTGTAGAAGGAGGTTTA 2330
Query 2365 AATTTATTTATTTGAATGTAATGTGA 2390
|||||||||||||| ||||||| |||
Sbjct 2331 AATTTATTTATTTGGATGTAATATGA 2356
Score = 187 bits (101), Expect = 3e-46
Identities = 127/139 (91%), Gaps = 4/139 (3%)
Strand=Plus/Plus
Query 9 CCCCACACATCTGAATGCAGATTCTGTGAGATATATAAAGCTACTTAAGATTCTAATCCT 68
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCCC-CACATCTGAATGCAGACTCTGTGAGATATATAAAGCTACTTAAGATTCTAATCCT 59
Query 69 ATGATTATTGTAAGAACTaaaaaaaGAATAATCAGTGCATTTTAGAGAGAAGATAGAGAT 128
|| ||||||||||| ||| |||||||||||||||||| |||| |||||||||| |||||
Sbjct 60 ATAATTATTGTAAGCACTTAAAAAAGAATAATCAGTGAATTTCAGAGAGAAGAGAGAGAA 119
Query 129 -AGAGA--TTACcttcttc 144
||||| |||||||||||
Sbjct 120 GAGAGAGATTACCTTCTTC 138
> Ahg944044 jgi|Araly1|944044|scaffold_700273.1
Length=2038
Score = 675 bits (365), Expect = 0.0
Identities = 1226/1627 (75%), Gaps = 118/1627 (7%)
Strand=Plus/Plus
Query 680 GAAATTTCATTTACAAGAACGTGGACTATCTCT-AGACGTGGCTCCTTGG-TCCCC-CTA 736
|||||||| ||| | ||||| |||| ||||||| | || | || | || |||| ||
Sbjct 372 GAAATTTCTTTTTCGAGAACATGGAATATCTCTCA-ACATACCT-C-GGGAGCCCCATTA 428
Query 737 AATGTAGATAAAAGATATATTATTCGAAGTGGTGTGTCCGGATTATACATGTACGGTATA 796
|| ||||| ||||||||||| ||||||||||||||||||||| | |||||||||| | |
Sbjct 429 AACGTAGACAAAAGATATATCATTCGAAGTGGTGTGTCCGGAGTCTACATGTACGCTGTG 488
Query 797 TTGGAGAGGTTAGAAGGTTGGCCCGACGTGGACATGGACCAAATCAGGATTGTCTTCAAG 856
|| ||||| ||| ||||||||||||||||| |||||||||||| ||| || |||||||||
Sbjct 489 TTAGAGAGATTAAAAGGTTGGCCCGACGTGAACATGGACCAAACCAGAATCGTCTTCAAG 548
Query 857 CTCAACCCaaaaaaaTTTGATTTCATGGCGATATCCGATGATCGGCAGAGAAGCATGCCA 916
|| ||| ||| |||||| |||| |||||| ||||| |||| |||||||| || |||||
Sbjct 549 CTTAACACAACAAAATTCGATTACATGGCTATATCTGATGGTCGGCAGAAAATTATGCCT 608
Query 917 TCGATG--GCAGATCGAG-----AAAA-T--TC-T--AAGT-CATTAGCTTACAAAGAAG 962
|| || ||||||||| |||| | || | ||| |||| |||||||||||||
Sbjct 609 TC--TGCAACAGATCGAGATATCAAAACTGGTCGTGCTAGTCCATTGGCTTACAAAGAAG 666
Query 963 CTGTTCTTTTGACAAAT--CCAAGCAACCCTAT-GTTCAAAGGAG-AGGTGGATGATAAG 1018
|||||| ||||| |||| |||| || | ||| || ||||| | |||| || ||||||
Sbjct 667 CTGTTCATTTGATAAATCCCCAA--AATCATATACTT-AAAGG-GCAGGTAGACGATAAG 722
Query 1019 TATATGTACTCAATGGAAGACAAAGACAACAATGTGCATGGTTGGATCTCATCAGACCCA 1078
|| |||||||| |||||| ||||||||||||| || || |||||||| || | |||| |
Sbjct 723 TACATGTACTCGATGGAAAACAAAGACAACAAAGTACACGGTTGGATATCGGCGGACCAA 782
Query 1079 CCTGTTGGGTTTTGGATGATAACTCCGAGCGATGAGTTCCG-TCTTGGTGGCCCCATCAA 1137
| |||||||||||||||||| ||||| ||||||||||| || || | |||| ||||||||
Sbjct 783 CGTGTTGGGTTTTGGATGATTACTCCCAGCGATGAGTTTCGTTCAT-GTGGGCCCATCAA 841
Query 1138 GCAAGACCTCACCTCTCATGCCGGACCCATCACACTCTCCATGTTTACGAGCACGCATTA 1197
||||| ||||| ||||||| ||||||| || || || |||||||| || |||||
Sbjct 842 ACAAGATCTCACTTCTCATGTGGGACCCACCATTCTTTCAATGTTTACAAGTGTACATTA 901
Query 1198 TGCGGGAAAAGAGATGAGA-ATGGA-TTATAGAAATG-GA-GAGCCATGGAAGAAAG-TT 1252
|||||| ||| || | | | | ||||| ||| | | ||||||||| || ||| |
Sbjct 902 CGCGGGAGTAGATATTA-ACA-CAATTTATA-AAA-GCAAGGAGCCATGG-AGGAAGATG 956
Query 1253 TTTGGTCCTGTCTTGGCTTATCTCAACTCTGTCTCTCCCAAAGATTCTAC-TCTTCGTCT 1311
||||| |||||||| | ||||||||| |||| | || | |||| | | || |||
Sbjct 957 TTTGGCCCTGTCTTTGTTTATCTCAATTCTG-C-CT--C-----TTCT-CGTAATCTTCT 1006
Query 1312 CTGGAGAGATGCTAAACGACAGATGGCTGCAGAAGTCAAAAGCTGGCCTTATGATTTTAT 1371
||||| ||||||||||||||||||| | | || ||| |||| |||||||||||||| |
Sbjct 1007 CTGGACCGATGCTAAACGACAGATGGTTTCCGAGGTCCAAAGTTGGCCTTATGATTTCGT 1066
Query 1372 -AACTTCAGAAGATTATCCTCTTCGCCATCAAAGAGGAACTC-TCGAA-GGTC-AATTCT 1427
|| |||| |||||| ||||||| || |||||||||| || || || |||| || |||
Sbjct 1067 GAA-GTCAGTAGATTACCCTCTTCATCACCAAAGAGGAA-TCGTC-AAGGGTCGAA-TCT 1122
Query 1428 TAATCAAAGACAGTTACGTGTC-AAGGTTAAA-G-A--TATATGGAAAATTTGCTTTTGT 1482
| ||| || || ||| | || | ||| | | ||| ||| ||||||||||||||
Sbjct 1123 TTGTCATGGAGAGATAC--AACAAAAGCGAAACGAACTTATTTGGGAAATTTGCTTTTGT 1180
Query 1483 TGGTTTGGCCCCAATTGGTGAAGCTGGTTCATGGCAAACCGAAT-CAAAGGGTTATCAAT 1541
|| || ||| | |||||||||||||||||||||||||||| ||| ||| |||||||
Sbjct 1181 GGGATTAGCCTTACCTGGTGAAGCTGGTTCATGGCAAACCGAAAACAA-GGGATATCAAT 1239
Query 1542 TTTGGACGAA-AGCTGACAGGAG-AGGGA-GATTCATAATAGAGAATGTGAGGGCAGGCA 1598
||||||| | ||| |||| || ||||| | |||| ||||| |||||| || |||| |
Sbjct 1240 TTTGGAC-ACGAGCAGACAA-AGTAGGGATG-TTCACAATAGCGAATGTTAGACCAGGGA 1296
Query 1599 ATTATAGTCTCTACGCATGGGGGTCTGGTTTTATTGGAGACTATAAGTATGAGCAAAACA 1658
| ||||||||||||||||||| ||||| ||||| || ||||| || ||||||| |||
Sbjct 1297 AGTATAGTCTCTACGCATGGGTTTCTGGGTTTATCGGTGACTACAAATATGAGCGTGACA 1356
Query 1659 TTACCATCACGCCAGGTAGCGAGAT-GAATGTAGGGC-CTTTAGTGTATGAACCGCCGAG 1716
|||||||||| |||||||| | ||| || ||||| | | | |||||| || || |||||
Sbjct 1357 TTACCATCACACCAGGTAGGGTGATAGAC-GTAGGACGCAT-AGTGTACGAGCCACCGAG 1414
Query 1717 AAACGGTCCAACAT-TGTGGGAAATCGGTGTACCGGATCGAACCGCAGGTGAATTCTATA 1775
||| ||||| || | ||||||| ||||| | ||| || |||||||| | ||||||||||
Sbjct 1415 AAATGGTCCGAC-TCTGTGGGAGATCGGAGAACCAGACCGAACCGCCGCAGAATTCTATA 1473
Query 1776 TACCGGATCCTTACCCTACACTGATGAATAAGCTTTATGTCAAC--C-CAC-TCC--AAG 1829
| || ||||| |||| || || ||| || || ||| | || | || ||| |||
Sbjct 1474 TCCCAGATCCGGACCCAACCCTTTTGACCAAACTCTATCTAAATTACTCAAATCCTCAAG 1533
Query 1830 ACAGATTTAGGCAATATGGAT-TATGGGATCGTTAC-GCAGATTTATACCCTC-AAAACG 1886
|||||||||| |||||||| | |||||||||||||| | | ||| || |||| |||| |
Sbjct 1534 ACAGATTTAGACAATATGG-TCTATGGGATCGTTACAGT-GTTTTGTATCCTCGAAAA-G 1590
Query 1887 ATCTTGTCTACACAA-TCGGTGTAAGTGA-TTATAGAAGTGATTGGTTCTTTGCACATGT 1944
||||| | | || | | | |||||||| || || || || ||||||| ||| |||||
Sbjct 1591 ATCTTATTTTTACTACTAGA-GTAAGTGACTT-TAAAAAAGACTGGTTCTATGCCCATGT 1648
Query 1945 GG-CGAG-AAACGTTGGTAACGATACATACCAACCAACAACATGGCAAATCATA-TTCAA 2001
| || ||| | ||| || | ||||| || |||||||||||||||| | | || ||
Sbjct 1649 CAAC-AGGAAA-GCTGGAAATGGGACATATAAAGCAACAACATGGCAAATTA-AGTTTAA 1705
Query 2002 CCTAAAAA-ACGTGAACCGTA-TCGGACGCTACACACTCCGAATAGCTCTAGCAT-CAGC 2058
||||| | |||| | | | | | ||||||||| ||||||||| | || | ||||
Sbjct 1706 TTTAAAAGCA-GTGATTCAAACTAGAAT-CTACACACTTCGAATAGCTTTGGC-TGCAGC 1762
Query 2059 -AGCTGATT-CGGAACTACAAATCCGAATCAACGATCCGAAATCCGATGCGATTTTCACA 2116
| | | | | || ||| | | ||||| | | || ||| | | | |||| |
Sbjct 1763 CA-CA-ACTACTGATCTAGTGGTTTGGGTCAACCAAGCTAATTCCAAACCCCTATTCATA 1820
Query 2117 ACCGGTTTTATCGGAAAGGACAATGCGATCGCAAGACATGGAATTCATGGATTATATAGA 2176
|| || | || || ||| || |||||||| || ||||| |||||||| || || | |
Sbjct 1821 ACTGGGCTAATAGGTCGGGATAACGCGATCGCCAGGCATGGGATTCATGGGTTGTACAAA 1880
Query 2177 TTGTATAGTATCGACGTTGC-TGGAAATTTACTAAGTGTTGGTGATAATACAATATTT-T 2234
||||| | |||||| ||| | |||||| ||||| || |||||| ||||||| || ||| |
Sbjct 1881 TTGTACAATATCGATGTT-CATGGAAAGTTACTTAGGGTTGGTAATAATACTATTTTTCT 1939
Query 2235 TAACTCA 2241
|| ||||
Sbjct 1940 TA-CTCA 1945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92102212410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5