BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22630.1
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320100 jgi|Araly1|320100|fgenesh1_pm.C_scaffold_4000157 981 0.0
> Ahg320100 jgi|Araly1|320100|fgenesh1_pm.C_scaffold_4000157
Length=684
Score = 981 bits (531), Expect = 0.0
Identities = 635/686 (93%), Gaps = 4/686 (1%)
Strand=Plus/Plus
Query 1 ATGGGGAGAGGGAAGATTGTGATCCAGAAGATCGATGATTCCACGAGTAGACAAGTCACT 60
|||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1 ATGGGGAGAGGGAAGACTGTGATCCAGAAGATCGATGATTCAACGAGTAGGCAAGTCACT 60
Query 61 TTCTCCAAAAGAAGAAAGGGTCTCATCAAGAAAGCTAAAGAACTTGCTATTCTCTGCGAC 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 TTCTCCAAAAGAAGAAAGGGTCTCATCAAGAAAGCTAAAGAACTCGCTATTCTCTGCGAC 120
Query 121 GCCGAGGTCTGTCTCATCATTTTCTCCAACACTGACAAGCTCTATGACTTTGCCAGCTCC 180
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 121 GCCGAGGTCTGTCTCATCATTTTCTCCAGTACCGACAAGCTCTATGACTTTGCCAGCTCC 180
Query 181 AGTGTGAAATCTACTATTGAACGATTCAATACGGCTAAGATGGAGGAGCAAGAACTAATG 240
||||||||||||||||||||||||||||||||| | ||||||||| ||||| ||||| |
Sbjct 181 AGTGTGAAATCTACTATTGAACGATTCAATACGACCAAGATGGAGCAGCAACAACTACTC 240
Query 241 AACCCTGCATCAGAAGTTAAGTTTTGGCAGAGAGAGGCTGAAACTCTAAGGCAAGAATTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AACCCTGCATCAGAAGTTAAGTTTTGGCAGAGAGAGGCTGAAACTCTAAGGCAAGAATTG 300
Query 301 CACTCATTGCAAGAAAATTATCGGCAACTAACGGGAGTGGAATTAAATGGTTTGAGCGTT 360
||||| ||||||||||| ||||||| |||||||||| | ||||||||||||||||||||
Sbjct 301 CACTCGCTGCAAGAAAATCATCGGCACCTAACGGGAGAGCAATTAAATGGTTTGAGCGTT 360
Query 361 AAGGAGTTACAAAA-CATAGAGAGTCAACTTGAAATGAGTTTACGTGGAATTCGTATGAA 419
|||||||||| || | | ||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 AAGGAGTTACGCAATC-TCGAGAGCCAACTTGAAATGAGTTTACGTGGAATTCGTATGAA 419
Query 420 AAGGGAACAAATTTTGACCAATGAAATTAAAGAGCTAACCAGAAAGAGGAATCTTGTTCA 479
||| ||||| ||||||||||||||||| ||||| |||||||||||||||| |||| ||||
Sbjct 420 AAGAGAACATATTTTGACCAATGAAATCAAAGAACTAACCAGAAAGAGGAGTCTTCTTCA 479
Query 480 TCATGAAAACCTCGA-ATTGTCGAGAAAAGTACAAAGGATTCATCAAGAAAATGTCGAAC 538
||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 480 TCATGAAAACCTCGAGATA-TCGAGAAAAGTGCAAAGGATTCATCAAGAAAATGTCGAAC 538
Query 539 TATACAAGAAGGCTTATGGAACGTCGAACACAAATGGATTGGGACATCATGAGCTAGTAG 598
|||||||| ||| ||||| |||||| |||||||| ||||||||||| ||||||||||| |
Sbjct 539 TATACAAGCAGGTTTATGCAACGTCAAACACAAACGGATTGGGACACCATGAGCTAGTGG 598
Query 599 ATGCAGTTTATGAATCCCATGCACAGGTTAGGCTGCAGCTAAGCCAGCCTGAGCAGTCCC 658
||| || ||||||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 599 ATGGAGCCAATGAATCCCTTGTAGAGGTTAGGCTGCAGCTAAGCCAGCCTGAGCAGTCCC 658
Query 659 ATTATAAGACATCTTCAAACAGCTAA 684
||||| |||| |||||||||||||||
Sbjct 659 ATTATGAGACTTCTTCAAACAGCTAA 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33395675292
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5