BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G22630.1 Length=901 Score E Sequences producing significant alignments: (Bits) Value Ahg320100 jgi|Araly1|320100|fgenesh1_pm.C_scaffold_4000157 981 0.0 > Ahg320100 jgi|Araly1|320100|fgenesh1_pm.C_scaffold_4000157 Length=684 Score = 981 bits (531), Expect = 0.0 Identities = 635/686 (93%), Gaps = 4/686 (1%) Strand=Plus/Plus Query 1 ATGGGGAGAGGGAAGATTGTGATCCAGAAGATCGATGATTCCACGAGTAGACAAGTCACT 60 |||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||| Sbjct 1 ATGGGGAGAGGGAAGACTGTGATCCAGAAGATCGATGATTCAACGAGTAGGCAAGTCACT 60 Query 61 TTCTCCAAAAGAAGAAAGGGTCTCATCAAGAAAGCTAAAGAACTTGCTATTCTCTGCGAC 120 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 61 TTCTCCAAAAGAAGAAAGGGTCTCATCAAGAAAGCTAAAGAACTCGCTATTCTCTGCGAC 120 Query 121 GCCGAGGTCTGTCTCATCATTTTCTCCAACACTGACAAGCTCTATGACTTTGCCAGCTCC 180 |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 121 GCCGAGGTCTGTCTCATCATTTTCTCCAGTACCGACAAGCTCTATGACTTTGCCAGCTCC 180 Query 181 AGTGTGAAATCTACTATTGAACGATTCAATACGGCTAAGATGGAGGAGCAAGAACTAATG 240 ||||||||||||||||||||||||||||||||| | ||||||||| ||||| ||||| | Sbjct 181 AGTGTGAAATCTACTATTGAACGATTCAATACGACCAAGATGGAGCAGCAACAACTACTC 240 Query 241 AACCCTGCATCAGAAGTTAAGTTTTGGCAGAGAGAGGCTGAAACTCTAAGGCAAGAATTG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AACCCTGCATCAGAAGTTAAGTTTTGGCAGAGAGAGGCTGAAACTCTAAGGCAAGAATTG 300 Query 301 CACTCATTGCAAGAAAATTATCGGCAACTAACGGGAGTGGAATTAAATGGTTTGAGCGTT 360 ||||| ||||||||||| ||||||| |||||||||| | |||||||||||||||||||| Sbjct 301 CACTCGCTGCAAGAAAATCATCGGCACCTAACGGGAGAGCAATTAAATGGTTTGAGCGTT 360 Query 361 AAGGAGTTACAAAA-CATAGAGAGTCAACTTGAAATGAGTTTACGTGGAATTCGTATGAA 419 |||||||||| || | | ||||| ||||||||||||||||||||||||||||||||||| Sbjct 361 AAGGAGTTACGCAATC-TCGAGAGCCAACTTGAAATGAGTTTACGTGGAATTCGTATGAA 419 Query 420 AAGGGAACAAATTTTGACCAATGAAATTAAAGAGCTAACCAGAAAGAGGAATCTTGTTCA 479 ||| ||||| ||||||||||||||||| ||||| |||||||||||||||| |||| |||| Sbjct 420 AAGAGAACATATTTTGACCAATGAAATCAAAGAACTAACCAGAAAGAGGAGTCTTCTTCA 479 Query 480 TCATGAAAACCTCGA-ATTGTCGAGAAAAGTACAAAGGATTCATCAAGAAAATGTCGAAC 538 ||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||| Sbjct 480 TCATGAAAACCTCGAGATA-TCGAGAAAAGTGCAAAGGATTCATCAAGAAAATGTCGAAC 538 Query 539 TATACAAGAAGGCTTATGGAACGTCGAACACAAATGGATTGGGACATCATGAGCTAGTAG 598 |||||||| ||| ||||| |||||| |||||||| ||||||||||| ||||||||||| | Sbjct 539 TATACAAGCAGGTTTATGCAACGTCAAACACAAACGGATTGGGACACCATGAGCTAGTGG 598 Query 599 ATGCAGTTTATGAATCCCATGCACAGGTTAGGCTGCAGCTAAGCCAGCCTGAGCAGTCCC 658 ||| || ||||||||| || | |||||||||||||||||||||||||||||||||||| Sbjct 599 ATGGAGCCAATGAATCCCTTGTAGAGGTTAGGCTGCAGCTAAGCCAGCCTGAGCAGTCCC 658 Query 659 ATTATAAGACATCTTCAAACAGCTAA 684 ||||| |||| ||||||||||||||| Sbjct 659 ATTATGAGACTTCTTCAAACAGCTAA 684 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33395675292 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5