BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22650.1
Length=1418
Score E
Sequences producing significant alignments: (Bits) Value
Ahg480239 jgi|Araly1|480239|fgenesh2_kg.3__2940__AT2G22650.1 2108 0.0
> Ahg480239 jgi|Araly1|480239|fgenesh2_kg.3__2940__AT2G22650.1
Length=1317
Score = 2108 bits (1141), Expect = 0.0
Identities = 1259/1317 (96%), Gaps = 3/1317 (0%)
Strand=Plus/Plus
Query 12 GGAATCCAAAGGCATTGGCGTGTAGACATGATCACTGCTGTTCTTCACCCTTGTTCTTCG 71
||||||||||||||||| ||||||||||||| |||||||||| |||| |||| |||||||
Sbjct 1 GGAATCCAAAGGCATTGTCGTGTAGACATGACCACTGCTGTTTTTCAGCCTTCTTCTTCG 60
Query 72 GCGTCTCTCTCTCTTCCCAACCGTCCTCCTCTTAGGTACGCCATCCTTGGTGCAGGTTTT 131
|| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 61 GCATCTCTCTCTCTTCCCAACCGTCCTCCTCTTAGGTACGCCGTCCTTGGTGCGGGTTTT 120
Query 132 GCTGGAATCTCTGTTGCCTGGCACCTGCTTAAGGAGAGTCCAAAAGAGCTGAGATTAAGT 191
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GCTGGAATCTCTGTTGCCTGGCACCTGCTTAAGGACAGTCCAAAAGAGCTGAGATTAAGT 180
Query 192 GTTGACGTATATGATGAAGTTGGCATAGGAGGTGGTGCTTCTGGTGTTTCTGGAGGACTC 251
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 181 GTTGACGTATATGATGAAGTTGGCATAGGAGGTGGGGCTTCTGGTGTCTCTGGAGGACTC 240
Query 252 CTCCATCCTTATTCTCCTAAAGGAAAGCTACTTTGGCATGGTGCTGAGTGTTGGAGAGAA 311
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCCACCCTTATTCTCCTAAAGGGAAGCTACTTTGGCATGGTGCTGAGTGTTGGAGAGAA 300
Query 312 TGTTTAGAGCTCTTAAATGTGGCTGAAACAGCTGCTTCTTCTAGTTACCAATCTACGGAG 371
||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||
Sbjct 301 TGTTTAGAGCTCTTAAATGTGGCCGAAACAGCTGCTTCTTCTAGTTACCCAGCTACGGAG 360
Query 372 AACAGAGACTTTAGCGAGAGTTTCGGAAATTTTATGGTTCGAAGAAGGGGAATCTTGAGA 431
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AACGGAGACTCTAGCGAGAGTTTCGGAAATTTTATGGTTCGAAGAAGGGGAATCTTGAGA 420
Query 432 CCAGCAACAAATGCCAAGACTTTAGATTTAATGAGTGATAATGCTCGAAACTGTCTTGCT 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCAGCAACAAATGCCAAGACTTTAGATTTAATGAGTGATAATGCTCGAAACTGTCTTGCT 480
Query 492 AGTTGTGTAGTAGAGACTATTGACAAAGATGGTGCACAAAATCTCGTCCCCAATCTATAC 551
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 481 AGTTGTGTAGTAGAGACTATTGACAAAGATGGTGCACGAAATCTTGTCCCCAATCTATAC 540
Query 552 CTGCCTTTGAACTGCGCCTTCTATTTTCCAGGAGCTATGAATGTTAATCCGCACCGATAT 611
|||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 541 CTGCCTTTGAACTGCGCCTTCTATTTTCCAGGAGCTATGAATGTTAATCCACAGCAATAT 600
Query 612 CTCCAGGCACTCTTTCTAGCATGCCAGAGCTCAGCAAAAACATCACTGGGAAGGAAAAAC 671
|||||||||||||||||||||||||||| ||| |||| | ||||||| ||||||||||||
Sbjct 601 CTCCAGGCACTCTTTCTAGCATGCCAGAACTCCGCAAGAGCATCACTTGGAAGGAAAAAC 660
Query 672 ATAACTTTGGTGAACAAGTCTATAACTGATGTGCTTGAACTTGAAGGAGGATATGATGCA 731
|||||||||||||| || ||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 661 ATAACTTTGGTGAAGAAATCTATAAGTGATGTGCTTGAACTTGAAGGAGAATATGATGCA 720
Query 732 GTAGTAATATGTCTTGGATCCAAGGTAGACTTTCTTCCAGGGCTTACTGGAAAGCTCCCT 791
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 721 GTAGTAATATGTCTTGGATCCAAGGTAGACTTTCTTCCAGGGCTTACTGGCAAGCTCCCT 780
Query 792 TTAAGGACATGCCGAGGTGTCATTACTCATATGCAGTTACACGAGAGTGCCAGAGGAAGT 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TTAAGGACATGCCGAGGTGTCATTACTCATATGCAGTTACACGAGAGTGCCAGAGGAAGT 840
Query 852 TACCCGGACGATGGACCTTCGATCTTGTCAGATGCGTGGCTCGCGGTTCAGGGACCCCGT 911
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 841 TACCCGGACGATGGACCTTCGATCTTGTCAGATGCGTGGCTTGCGGTTCAGGGACCTCGT 900
Query 912 AATCTGCACATGGGATCCACATGGGAATGGCAATCAAGAAATTATTCATCGGATGTCCCA 971
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AATCTACACATGGGATCCACATGGGAATGGCAATCAAGAAATTATTCATCGGATGTCCCA 960
Query 972 GCAGAGGAAGCTTCAAGAGCTCTCAACGAGCTTCTTCCGAAAGCAAGTGCAGTTTATCCA 1031
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 961 GCAGAGGAAGCTTCAAGAGCTCTCGACGAGCTTCTTCCGAAAGCAAGTACAGTTTATCCA 1020
Query 1032 GACATAGAAAAGTGGGAATTTGCGGGAGCAAGGGCGGGCTTGAGAGCAATGCCACCTGTC 1091
|||||||| |||||| ||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1021 GACATAGAGAAGTGGAAATTTGCGGGAGCAAGGGCAGGTTTGAGAGCAATGCCACCTGTC 1080
Query 1092 ACAAGCCATGGATCACTGCCGCTCTTGGGATGTGTTAATCAGCTCATAGGTGCTG--G-T 1148
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| | | |
Sbjct 1081 ACAAGCCATGGGTCACTGCCGCTCTTGGGATGTGTAAATCAGCTCATAGGTGCAGCAGGT 1140
Query 1149 CAGTTTTGCAACTTCTGGGTATTTTCAGGGCTCGGATCAAGGGGACTACTCTATCATGCT 1208
||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1141 GAGTCTTGCAAATTCTGGGTATTTTCAGGGCTCGGATCAAGGGGATTACTCTATCATGCT 1200
Query 1209 TGGCTTGGGAAACTCATGTCTAAAGCTGTTTTAAGTTGCAATGAAGAATTACTTCCTTCT 1268
|||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1201 TGGCTTGGGAAACTCATGGCTAAAGCTGTTTTAAGTTGCAAGGAAGAATTAATTCCTTCT 1260
Query 1269 GAACTAACTTCTTGGAAGAAAAACAGACAATAAGAGTACCATTGTTTACTTCTCAGT 1325
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1261 GAACTAACTTCTTGGAAGAAAAACAGACTATAAGAGTACTTTTGTTTACTTCTCAGT 1317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53021621040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5