BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22660.2
Length=2789
Score E
Sequences producing significant alignments: (Bits) Value
Ahg343817 jgi|Araly1|343817|fgenesh1_pg.C_scaffold_4000159 3618 0.0
> Ahg343817 jgi|Araly1|343817|fgenesh1_pg.C_scaffold_4000159
Length=2763
Score = 3618 bits (1959), Expect = 0.0
Identities = 2322/2493 (93%), Gaps = 41/2493 (2%)
Strand=Plus/Plus
Query 89 ATGGATAAGGAGAAGGATCATGAAGTGGAGTGGCTTGAAGCTCAGAAGATAGAAATAAGC 148
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 220 ATGGATAAGGAGAAAGATCATGAAGTGGAGTGGCTTGAAGCTCAGAAGATTGAGATAAGC 279
Query 149 GTTGACTTATTAGCTGCAGCGAAACAACACCTTTTGTTCCTTGAAACTGTTGATAGGAAT 208
||||||||| |||||||||| |||||||| ||||||||||| | |||||||||||||||
Sbjct 280 GTTGACTTACTAGCTGCAGCTAAACAACAGCTTTTGTTCCTCGCTACTGTTGATAGGAAT 339
Query 209 CGATGGCTCTACGATGGTCCTGCGCTTGAAAAAGCCATCTACAGGTACAATGCTTGTTGG 268
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 340 CGATGGCTCTACGATGGTCCTGCGCTCGAAAAAGCCATCTACAGGTACAATGCTTGTTGG 399
Query 269 CTTCCTTTGCTTGTTAAATACTCTGAGTCATCATCGGTTAGTGAAGGGTCTTTGGTCCCT 328
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 400 CTTCCTTTGCTTGCCAAATACTATGAGTCATCATCGGTTAGTGAAGGGTCTTTGGTCCCT 459
Query 329 CCTCTTGATTGTGAATGGATTTGGCATTGTCACAGGCTTAATCCGGTGAGGTATAA-TTC 387
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 460 CCTCTTGATTGTGAATGGATTTGGCATTGCCACAGGCTTAATCCGGTGAGGTATAAGTT- 518
Query 388 TGACTGTGAGCAATTTTACGGGAGAGTTCTCGACAATTCTGGAGTTCTTTCTTCTGTTGA 447
|||||||||| ||||||||||||||||||||||||||||||| ||| | ||||||||| |
Sbjct 519 TGACTGTGAGAAATTTTACGGGAGAGTTCTCGACAATTCTGGTGTTGTATCTTCTGTTAA 578
Query 448 TGGGAACTGCAAATTGAAAACTGAAGATTTGTGGAAAAGATTGTACCCTGATGAACCTTA 507
|||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 579 TGGGAACTGCAAATTGCAAACTGAAGATTTGTGGAAAAGATTGTATCCTGAGGAACCTTA 638
Query 508 TGAGCTTGACTTGGATAACATAGACTTAGAGGACATCTCTGAGAAATCTTCAGCTCTTGA 567
|||||| |||||| |||| |||||| |||||||||||| |||||||||||| ||||||
Sbjct 639 TGAGCTAGACTTGAATAAGGTAGACTCGGAGGACATCTCTAAGAAATCTTCAGATCTTGA 698
Query 568 GAAATGCACCAAATATGATCTTGTTTCAGCTGTTAAGAGGCAGAGCCCATTTTACTACCA 627
|||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 699 GAAATGCACCAATTATGATCTAGTTTCAGCGGTTAAGAGGCAGAGCCCATTTTACTACCA 758
Query 628 GGTTTCGAGGTCCCATGTAAACAGTGACA-TTTTTCTACAAGAAGCTGTTGCTAGATATA 686
||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 759 GGTTTCGAGATCCCATGTAAACAATGA-AGTTTTTCTACAAGAAGCTGTTGCTAGATATA 817
Query 687 AGGGGTTTCTCTATCTGATAAAGATGAACAGAGAAAGGTCTTTAAAAAGGTTTTGTGTTC 746
||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||
Sbjct 818 AGGGGTTTCTCTATCTGATTAAGACGAACAGAGAAAGGTCTTTAAAACGGTTTTGTGTTC 877
Query 747 CGACTTACGATGTTGACCTTATCTGGCACACACATCAGCTGCACCCAGTTTCTTACTGTG 806
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 878 CGACTTATGATGTTGACCTTATCTGGCACACACATCAGCTGCATCCAGTTTCTTACTGTG 937
Query 807 ATGATATGGTGAAGCTCATTGGTAAAGTGTTGGAGCATGATGACACAGATTCTGACCGAG 866
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 938 ATGATATGGAGAAGCTCATTGGTAAGGTGTTGGAGCATGATGACACAGATTCTGACCGAG 997
Query 867 GCAAAGGTAAGAAGCTCGATACCGGTTTTTCTAAGACTACTGCACAATGGGAAGAGACAT 926
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 998 GCAAAGGTAAGAAACTCGATACCGGTTTTTCTAAGACTACTGCACAATGGGAGGAGATGT 1057
Query 927 TCGGTACAAGGTACTGGAAAGCCGGTGCAATGCATAGAGGCAAGACACCTGTACCTGTCA 986
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1058 TTGGTACAAGGTACTGGAAAGCCGGTGCAATGCATAGAGGCAAGACACCTGCACCTGTCA 1117
Query 987 CAAATTCTCCTTATGCTTCTGATGTTTTGGTCAAAGACCCAACTGCAAAAGACGATTTCC 1046
||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||
Sbjct 1118 CAACTTCTCCTTATGCTTCTGATGTTTTGGTCAAAGAACCAACTGCAAAAGAGGATATCC 1177
Query 1047 AGAATTTAATCCAATTCCCAGAGGTGGAAGTTGTTGAGGTTCTCTTGGAGATTATCGGGG 1106
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 AGAATTTAATCCAATTTCCAGAGGTGGAAGTTGTTGAGGTTCTCTTGGAGATTATCGGGG 1237
Query 1107 TTAGAAACTTACCAGATGGACATAAGGGAAAGGTCTCGGTTATGTTCAGTAAAACTCAGC 1166
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1238 TTAGAAACTTACCAGATGGACATAAGGGAAAGATCTCGGTTATGTTCAGTAAAACTCGGC 1297
Query 1167 CGGATTCTCTTTTCAATGCTGAACGTAGACTGACCATTTTATCCGAGGTTGGGGAAAAGC 1226
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 CTGATTCTCTTTTCAATGCTGAACGTAGACTGACCATTTTATCCGAGGTTGGGGAAAAGC 1357
Query 1227 AAGTAGCTACTTTCCAGTGTGAACCTACAGGAGAGCTTGTTTTCAAACTTATTTCCTGTT 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1358 AAGTAGCTACTTTCCAGTGTGAACCTACAGGAGAGCTTGTTTTCAAACTTATTTCCTCTT 1417
Query 1287 CACCGTCTAAGATACCAGTTTCAAGAGAGCCTAAAAACTTGGGTTTTGCTTCTTTATCAC 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 CACCGTCTAAGATACCAGTTTCAAGAGAGCCTAAAAACTTGGGTTTTGCTTCTTTATCAC 1477
Query 1347 TAAAGGAGTTTCTGTTTCCAGTTATTACTCAACTCTCTGTTGAGAAGTGGTTGGAGTTAA 1406
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 TAAAGGAGTTTCTATTTCCAGTTATTACTCAACTCTCTGTTGAGAAGTGGTTGGAGTTAA 1537
Query 1407 CACCCAGTAAAGGTAGTCAAA-CAGATACGAAACCC-ATAAGCCTGCGAGTCGCTGTCTC 1464
|||||||||||||||| |||| ||||| | ||| || |||||||||||||||||||||||
Sbjct 1538 CACCCAGTAAAGGTAG-CAAAGCAGAT-CAAAAACCTATAAGCCTGCGAGTCGCTGTCTC 1595
Query 1465 GTTTACTCCACCAGTACGCAGTCCATCAGTCTTACACATGGTTCAATCAAGACCATCGTG 1524
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1596 GTTTACTCCACCAATACGCAGTCCATCAGTCTTACACATGGTTCAATCAAGACCACCGTG 1655
Query 1525 CAAAGGCTCTTGCTTCTTTCCAATCATTGGAAAGTCCCGTCTTGCTAAAAGTTCAACACA 1584
||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 1656 GAAAGGCTCTTGCTTCTTTCCAATTATGGGAAAGTCCCGTCTTGCTAAGAGTTCAACACA 1715
Query 1585 CATTGTTGATGAAACCCAAACAGAGGTGATCACACTTCAAATTAGGAACTCCGCTGATGG 1644
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1716 CATTGTTGATGAAACCCAAACAGAGGTGATCACACTTCAAATTAGGAACTCCATTGATGG 1775
Query 1645 AGGAATACTTAAAGATGATCAGAGACAAGTTATGGGTGTGACAGACTCTGGTGAAACTCG 1704
|| || ||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||
Sbjct 1776 AGCAAAACTTAAAGATGATCAAAGACAAGTTATTGGTGTGATAGACTCTGGTGAAACTCG 1835
Query 1705 CGTGCTTGCGGTTTATACTGGTAGTTTCTGGTCTTTGCTGGACTCGAAATGGTCACTTAA 1764
|||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1836 AGTGCTTGCGGATTATGCTGGTAGTTTCTGGTCTTTATTGGACTCGAAATGGTCACTTAA 1895
Query 1765 GCAAATAAACGCCTCCACTGCAGATAATCCGCTCTTTGAGATTTTGGGCCCTCGAGTGGT 1824
||||| ||| |||||||||||||||||||| ||||||||| ||||||| |||||||||||
Sbjct 1896 GCAAACAAATGCCTCCACTGCAGATAATCCTCTCTTTGAGCTTTTGGGTCCTCGAGTGGT 1955
Query 1825 GAAAATTTTCTCGGGGAGAAAGCTGGATTATGAACCAAAACACTGCGCAAACCTTAGAAG 1884
||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1956 GAACATTTTCTCGGGTAGGAAGCTGGATTATGAACCAAAACACTGCGCAAACCTTAGAAG 2015
Query 1885 TGATCTAGATTTCATGACTCTTGTGGAATTTTCCAAGCAACATCCATATGGAAAAACTGT 1944
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 2016 TGATCAAGATTTCATGACTCTTGTGGAATTTTCCAAGCAACATCCATATGGGAAAGCTGT 2075
Query 1945 GGGATTGGTTGATATGAGATTTGGTTCCATTGAGGC--G----AAAGAGAATTGGTTGCT 1998
||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
Sbjct 2076 AGGATTGGTTGATATGAGATTTGGTTCCATTGAGGCAAGTGTGAAAGAGAATTGGTTGGT 2135
Query 1999 TTTACCCGGAATCGTATCTGCTTTCATACTCCATACTGTTCTGAAGAAAGGAGGTTCTGA 2058
||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 2136 TTTGCCCGGAATCGTATCTGCTTTCATACTCCATACTGTTCTGAAGAAAGGAGTTTTTGA 2195
Query 2059 AGGCTTCAATGTCACAACCAAAGATATAAAAGAGGAAAGCAAACAGACTAAACTTGTTGC 2118
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
Sbjct 2196 TGGCTTCAATGTCACAACCAAAGAAATAAAAGAGGAAAGCAAACCGACTAAACTTGTTAC 2255
Query 2119 TGCGACAGAAAATAA-TGTGAATGCAAACTCTACGAATGTGGAGACC-CAAACTGCTATT 2176
||||||||||||||| | |||||||||| ||||||||||||||||| || |||||||
Sbjct 2256 TGCGACAGAAAATAAAT-TGAATGCAAAATCTACGAATGTGGAGACTGCAG-CTGCTATC 2313
Query 2177 ACAGCCCCTAAAAAAGGCAGCGGTTGCGGCGGTGGCTGTAGTGGTGAATGCGGAAACATG 2236
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2314 ACAGCTCCTAAAAAAGGCAGCGGTTGCGGTGGTGGCTGTAGTGGTGAATGCGGAAACATG 2373
Query 2237 GTGAAAGCAGCTAATGCTAGCGGTTGCGGCAGTAGTTGTAGTGGAGAATGCGGAGACATG 2296
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 2374 GTGAAAGCAGCTAATGCTAGCGGTTGTGGGAGTAGTTGTAGTGGAGAATGCGGAGACATG 2433
Query 2297 GTGAAATCAGCA-GCAAATGCTAGCGGCTGCGGTAGTGGTTGTAGCGGTGAATGTGGAAA 2355
|||||||||| | |||| |||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 2434 GTGAAATCAG-ATGCAACTGCTAGTGGCTGTGGTAGTGGCTGTAGCGGTGAATGTGGAAA 2492
Query 2356 TATGGTGAAAGCAGCTAACGCTAGTGGT-G-G----TGGTT--A-TGG-G---GCT-AGA 2401
||||||||||||||| |||||||| ||| | | ||||| | ||| | || |||
Sbjct 2493 TATGGTGAAAGCAGCGAACGCTAGCGGTTGTGGCAGTGGTTGCAGTGGAGAATGCGGAGA 2552
Query 2402 --TGC--AAAGCAGCTAAAGCTAGCGGTTGCGGGGGTGGTTGCGGTGGTGGCTGCGGCGG 2457
|| |||||||| ||||||||||||||||| ||||||| |||||||| || || ||
Sbjct 2553 CATGGTGAAAGCAGCGAAAGCTAGCGGTTGCGGCAGTGGTTGTGGTGGTGGTTGTGGTGG 2612
Query 2458 TGGTTGCGGAGACATGGTGAAATCAG-TAAATGCTAGCGGCTGTGGCGGTGGTTGTAACG 2516
||| |||||||||||||||||| ||| |||| |||||||| || ||| |||||||| ||
Sbjct 2613 TGGATGCGGAGACATGGTGAAAGCAGCTAAA-GCTAGCGGTTGCGGCAGTGGTTGTGGCG 2671
Query 2517 GTGAATGCGGAAACATGGTGAAAGCAGCATAAT 2549
||| ||||||| ||||||||||||||||| |||
Sbjct 2672 GTGGATGCGGAGACATGGTGAAAGCAGCA-AAT 2703
Score = 195 bits (105), Expect = 2e-48
Identities = 294/380 (77%), Gaps = 34/380 (9%)
Strand=Plus/Plus
Query 2195 AGCGGTTGCGGCG-GTGGCTGTAGTGGTGAATGCGGAAACATGGTGAAAGCAGCT--AA- 2250
|||||||| || | || | |||||||| ||||||||| ||||||||||| ||| | ||
Sbjct 2392 AGCGGTTGTGG-GAGTAGTTGTAGTGGAGAATGCGGAGACATGGTGAAATCAGATGCAAC 2450
Query 2251 TGCTAGCGGTTGCGGCAGTAGTTGTAGTGGAGAATGCGGAGACATGGTGAAATCAGCAGC 2310
|||||| || || || ||| | ||||| || ||||| ||| | |||||| || ||||||
Sbjct 2451 TGCTAGTGGCTGTGGTAGTGGCTGTAGCGGTGAATGTGGAAATATGGTG-AA--AGCAGC 2507
Query 2311 AAATGCTAGCGGCTGCGGTAGTGGTTGTAGCGGTGAATGTGGAAATATGGTGAAAGCAGC 2370
|| |||||||| || || |||||||| || || ||||| ||| | ||||||||||||||
Sbjct 2508 GAACGCTAGCGGTTGTGGCAGTGGTTGCAGTGGAGAATGCGGAGACATGGTGAAAGCAGC 2567
Query 2371 -TAA-C--GC---T-----A------GTGGTGGTGGTTATGG-GGCTAGATGCAAAG-CA 2410
|| | || | | |||||||||||| ||| || | ||||| || ||
Sbjct 2568 GAAAGCTAGCGGTTGCGGCAGTGGTTGTGGTGGTGGTTGTGGTGG-TGGATGCGGAGACA 2626
Query 2411 -GCT-AAAGCTAGCGGTTGCGGGGGTGGTTGCGGTGGTGGCTGCGGCGGTGGTTGCGGAG 2468
| | ||||| ||| | | | |||||||| |||| || |||||||| |||||||
Sbjct 2627 TGGTGAAAGC-AGC--TAAAGCTAGCGGTTGCGGCAGTGGTTGTGGCGGTGGATGCGGAG 2683
Query 2469 ACATGGTGAAATCAGTAAATGCTAGCGGCTGTGGCGGTGGTTGTAACGGTGAATGCGGAA 2528
||||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 2684 ACATGGTGAAAGCAGCAAATGCTAGCGGCTGCGGCGGTGGTTGTAGCGGTGAATGCGGAA 2743
Query 2529 ACATGGTGAAAGCAGCATAA 2548
|||||||||||||||| |||
Sbjct 2744 ACATGGTGAAAGCAGCCTAA 2763
Score = 84.2 bits (45), Expect = 5e-15
Identities = 58/64 (91%), Gaps = 2/64 (3%)
Strand=Plus/Plus
Query 2189 AAAGGC-AGCGGTTGCGGCGGTGGCTGTAGTGGTGAATGCGGAAACATGGTGAAAGCAGC 2247
||| || ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 2700 AAATGCTAGCGGCTGCGGCGGTGGTTGTAGCGGTGAATGCGGAAACATGGTGAAAGCAGC 2759
Query 2248 -TAA 2250
|||
Sbjct 2760 CTAA 2763
Score = 76.8 bits (41), Expect = 8e-13
Identities = 92/116 (79%), Gaps = 6/116 (5%)
Strand=Plus/Plus
Query 2485 AAATGCTAGCGGCTGTGGCGGTGGTTGTAACGGTGAATGCGGAAACATGGTGAAAGCAGC 2544
||| || ||||| || || ||||| |||| |||||||||||||||||||||||||||||
Sbjct 2326 AAAGGC-AGCGGTTGCGGTGGTGGCTGTAGTGGTGAATGCGGAAACATGGTGAAAGCAGC 2384
Query 2545 ATAAT-CTGGTAGTTGTGGTG-GT-GACCTAGTAGAGAATGCGAAAATGTGGTGAA 2597
|||| || | ||||||| | || | |||| ||||||||| | | |||||||
Sbjct 2385 -TAATGCTAGCGGTTGTGG-GAGTAGTTGTAGTGGAGAATGCGGAGACATGGTGAA 2438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105243346935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5