BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G22670.4 Length=1630 Score E Sequences producing significant alignments: (Bits) Value Ahg932229 jgi|Araly1|932229|scaffold_400217.1 1400 0.0 Ahg482270 jgi|Araly1|482270|fgenesh2_kg.4__1330__AT2G33310.1 84.2 3e-15 > Ahg932229 jgi|Araly1|932229|scaffold_400217.1 Length=982 Score = 1400 bits (758), Expect = 0.0 Identities = 926/1002 (92%), Gaps = 32/1002 (3%) Strand=Plus/Plus Query 367 ATTGAAGATCTGATGTCTTATCGATTGCTAAGTGTGGATAAGGATGAACTGGTTACGTCA 426 ||| |||||||||||||||||||||||||| |||||||||| | | | || | | Sbjct 10 ATT-AAGATCTGATGTCTTATCGATTGCTACGTGTGGATAA-G--G-A--GG--A----A 56 Query 427 CCTTGTTTGAAAGAACGTAACTACTTGGGTCTCTCTGATTGTTCCTCTGTTGATAGCTCA 486 ||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 57 CCTGGTTTGAAGGAACGTAACTACTTGGGTCTGTCTGATTGTTCCTCTGTTGATAGCTCA 116 Query 487 ACTATTCCCAATGTTGTTGGGAAGAGCAATCTCAATTTCAAAGCTACTGAACTGAGGCTA 546 || ||||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 117 ACCATTCCCAATGTTGAT---AAGAGCAATCTCAATTTCAAAGCTACTGAACTGAGGCTA 173 Query 547 GGTCTTCCTGAGTCTCAATCTCCTGAGAGAGAGACTGATTTCGGTTTGCTGAGTCCGAGA 606 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 174 GGTCTTCCTGAGTCGCAATCTCCCGAGAGAGAGACTGATTTCGGTTTGCTGAGTCCGAGA 233 Query 607 ACACCCGATGAGAAGCTTCTCTTCCCGTTGCTACCTTCTAAAGACAATGGTTCTGCTACT 666 |||| ||||||||| |||||||| |||||||| |||| ||||||||||| |||||||||| Sbjct 234 ACACTCGATGAGAAACTTCTCTTTCCGTTGCTTCCTTGTAAAGACAATGCTTCTGCTACT 293 Query 667 ACAGGGCATAAGAATGTTGTTTCTGGTAACAAGAGAGGATTTGCTGACACTTGGGATGAG 726 |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| ||| Sbjct 294 ACAGGGCACAAGAATGTTGTTTCTGGTAACAAAAGAGGATTTGCTGATACTTGGGACGAG 353 Query 727 TTTTCGGGTGTGAAAGGATCTGTTAGACCTGGAGGAGGAATCAACATGATGTTGTCGCCG 786 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 354 TTTTCGGGTGTGAAAGGATCTGTTAGACCT---GGAGGAATCAACATGATGTTGTCGCCG 410 Query 787 AAAGTTAAGGATGTCTCGAAGAGTATTCAAGAAGAAAGATCTCATGCTAA--G-GGTGGC 843 ||||||||||||||| |||| || | | ||||||||||||||||| | |||||| Sbjct 411 AAAGTTAAGGATGTCCCGAA-AG-A-T------GAAAGATCTCATGCTAAGGGTGGTGGC 461 Query 844 TTGAACAATGCACCAGCTGCCAAGGCACAGGTTGTTGGTTGGCCTCCAATCAGATCATAC 903 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 462 TTGAACAATGCACCAGCTGCCAAGGCACAGGTTGTTGGTTGGCCTCCAATCAGATCATAC 521 Query 904 CGGAAGAATACAATGGCTTCTTCTACTTCGAAGAACACTGATGAGGTTGATGGGAAACCT 963 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 522 CGGAAGAATACAATGGCTTCTTCTACTTCGAAGAACACTGATGAGGTTGATGGTAAACCG 581 Query 964 GGTCTTGGTGTTCTGTTTGTGAAGGTGAGCATGGATGGTGCTCCGTATCTGAGAAAGGTC 1023 |||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||| Sbjct 582 GGTCTTGGTGCCCTGTTTGTGAAAGTGAGCATGGATGGTGCTCCATATCTGAGAAAGGTC 641 Query 1024 GACTTGAGAACTTACACTTCCTATCAACAGTTGTCTTCTGCACTTGAGAAAATGTTCAGC 1083 |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| Sbjct 642 GACTTGAGAACTTACAGTTCCTATCAACAGTTGTCTTCTGCGCTTGAGAAAATGTTCAGC 701 Query 1084 TGCTTCACCCTTGGTCAATGTGGTCTTCATGGTGCTCAAGGGAGGGAAAGAATGAGCGAG 1143 |||||||| |||||||||| ||| |||||||| |||||||||| |||||||||||||||| Sbjct 702 TGCTTCACTCTTGGTCAATATGGACTTCATGGAGCTCAAGGGACGGAAAGAATGAGCGAG 761 Query 1144 ATTAAACTGAAGGATCTTCTTCATGGATCAGAATTTGTGCTTACTTATGAAGATAAAGAC 1203 |||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 762 ATTAAATTGAAGGATCTTCTTCATGGATCAGAATTCGTGCTTACTTATGAAGACAAAGAC 821 Query 1204 GGTGATTGGATGCTTGTTGGCGATGTTCCATGGGAGATATTTACTGAAACATGCCAGAAA 1263 |||||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||| Sbjct 822 GGTGATTGGATGCTCGTTGGAGATGTCCCTTGGGAGATATTTACTGAAACATGCCAGAAA 881 Query 1264 CTGAAGATCATGAAGGGTTCTGATTCTATTGGCTTAGCTCCAGGTGCAGTGGAGAAATCG 1323 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 882 CTGAAGATCATGAAGGGCTCTGATTCTATTGGATTAGCTCCAGGTGCAGTGGAGAAATCG 941 Query 1324 AAGAACAAAGAGCGGGTTTGAAACGAAGATGCTCAAGACaaa 1365 ||||||||||||||||||||||| || | |||||||||||| Sbjct 942 AAGAACAAAGAGCGGGTTTGAAATAAA-AGGCTCAAGACAAA 982 > Ahg482270 jgi|Araly1|482270|fgenesh2_kg.4__1330__AT2G33310.1 Length=1356 Score = 84.2 bits (45), Expect = 3e-15 Identities = 58/64 (91%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 1177 TTTGTGCTTACTTATGAAGATAAAGACGGTGATTGGATGCTTGTTGGCGATGTTCCATGG 1236 ||||| ||||| ||||||||||| || || |||||||||||||||||||||||||||||| Sbjct 911 TTTGTACTTACCTATGAAGATAAGGAAGGAGATTGGATGCTTGTTGGCGATGTTCCATGG 970 Query 1237 GAGA 1240 ||| Sbjct 971 -AGA 973 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61096752980 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5