BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22670.4
Length=1630
Score E
Sequences producing significant alignments: (Bits) Value
Ahg932229 jgi|Araly1|932229|scaffold_400217.1 1400 0.0
Ahg482270 jgi|Araly1|482270|fgenesh2_kg.4__1330__AT2G33310.1 84.2 3e-15
> Ahg932229 jgi|Araly1|932229|scaffold_400217.1
Length=982
Score = 1400 bits (758), Expect = 0.0
Identities = 926/1002 (92%), Gaps = 32/1002 (3%)
Strand=Plus/Plus
Query 367 ATTGAAGATCTGATGTCTTATCGATTGCTAAGTGTGGATAAGGATGAACTGGTTACGTCA 426
||| |||||||||||||||||||||||||| |||||||||| | | | || | |
Sbjct 10 ATT-AAGATCTGATGTCTTATCGATTGCTACGTGTGGATAA-G--G-A--GG--A----A 56
Query 427 CCTTGTTTGAAAGAACGTAACTACTTGGGTCTCTCTGATTGTTCCTCTGTTGATAGCTCA 486
||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 57 CCTGGTTTGAAGGAACGTAACTACTTGGGTCTGTCTGATTGTTCCTCTGTTGATAGCTCA 116
Query 487 ACTATTCCCAATGTTGTTGGGAAGAGCAATCTCAATTTCAAAGCTACTGAACTGAGGCTA 546
|| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 117 ACCATTCCCAATGTTGAT---AAGAGCAATCTCAATTTCAAAGCTACTGAACTGAGGCTA 173
Query 547 GGTCTTCCTGAGTCTCAATCTCCTGAGAGAGAGACTGATTTCGGTTTGCTGAGTCCGAGA 606
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 174 GGTCTTCCTGAGTCGCAATCTCCCGAGAGAGAGACTGATTTCGGTTTGCTGAGTCCGAGA 233
Query 607 ACACCCGATGAGAAGCTTCTCTTCCCGTTGCTACCTTCTAAAGACAATGGTTCTGCTACT 666
|||| ||||||||| |||||||| |||||||| |||| ||||||||||| ||||||||||
Sbjct 234 ACACTCGATGAGAAACTTCTCTTTCCGTTGCTTCCTTGTAAAGACAATGCTTCTGCTACT 293
Query 667 ACAGGGCATAAGAATGTTGTTTCTGGTAACAAGAGAGGATTTGCTGACACTTGGGATGAG 726
|||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 294 ACAGGGCACAAGAATGTTGTTTCTGGTAACAAAAGAGGATTTGCTGATACTTGGGACGAG 353
Query 727 TTTTCGGGTGTGAAAGGATCTGTTAGACCTGGAGGAGGAATCAACATGATGTTGTCGCCG 786
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 354 TTTTCGGGTGTGAAAGGATCTGTTAGACCT---GGAGGAATCAACATGATGTTGTCGCCG 410
Query 787 AAAGTTAAGGATGTCTCGAAGAGTATTCAAGAAGAAAGATCTCATGCTAA--G-GGTGGC 843
||||||||||||||| |||| || | | ||||||||||||||||| | ||||||
Sbjct 411 AAAGTTAAGGATGTCCCGAA-AG-A-T------GAAAGATCTCATGCTAAGGGTGGTGGC 461
Query 844 TTGAACAATGCACCAGCTGCCAAGGCACAGGTTGTTGGTTGGCCTCCAATCAGATCATAC 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 TTGAACAATGCACCAGCTGCCAAGGCACAGGTTGTTGGTTGGCCTCCAATCAGATCATAC 521
Query 904 CGGAAGAATACAATGGCTTCTTCTACTTCGAAGAACACTGATGAGGTTGATGGGAAACCT 963
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 522 CGGAAGAATACAATGGCTTCTTCTACTTCGAAGAACACTGATGAGGTTGATGGTAAACCG 581
Query 964 GGTCTTGGTGTTCTGTTTGTGAAGGTGAGCATGGATGGTGCTCCGTATCTGAGAAAGGTC 1023
|||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 582 GGTCTTGGTGCCCTGTTTGTGAAAGTGAGCATGGATGGTGCTCCATATCTGAGAAAGGTC 641
Query 1024 GACTTGAGAACTTACACTTCCTATCAACAGTTGTCTTCTGCACTTGAGAAAATGTTCAGC 1083
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 642 GACTTGAGAACTTACAGTTCCTATCAACAGTTGTCTTCTGCGCTTGAGAAAATGTTCAGC 701
Query 1084 TGCTTCACCCTTGGTCAATGTGGTCTTCATGGTGCTCAAGGGAGGGAAAGAATGAGCGAG 1143
|||||||| |||||||||| ||| |||||||| |||||||||| ||||||||||||||||
Sbjct 702 TGCTTCACTCTTGGTCAATATGGACTTCATGGAGCTCAAGGGACGGAAAGAATGAGCGAG 761
Query 1144 ATTAAACTGAAGGATCTTCTTCATGGATCAGAATTTGTGCTTACTTATGAAGATAAAGAC 1203
|||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 762 ATTAAATTGAAGGATCTTCTTCATGGATCAGAATTCGTGCTTACTTATGAAGACAAAGAC 821
Query 1204 GGTGATTGGATGCTTGTTGGCGATGTTCCATGGGAGATATTTACTGAAACATGCCAGAAA 1263
|||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 822 GGTGATTGGATGCTCGTTGGAGATGTCCCTTGGGAGATATTTACTGAAACATGCCAGAAA 881
Query 1264 CTGAAGATCATGAAGGGTTCTGATTCTATTGGCTTAGCTCCAGGTGCAGTGGAGAAATCG 1323
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 882 CTGAAGATCATGAAGGGCTCTGATTCTATTGGATTAGCTCCAGGTGCAGTGGAGAAATCG 941
Query 1324 AAGAACAAAGAGCGGGTTTGAAACGAAGATGCTCAAGACaaa 1365
||||||||||||||||||||||| || | ||||||||||||
Sbjct 942 AAGAACAAAGAGCGGGTTTGAAATAAA-AGGCTCAAGACAAA 982
> Ahg482270 jgi|Araly1|482270|fgenesh2_kg.4__1330__AT2G33310.1
Length=1356
Score = 84.2 bits (45), Expect = 3e-15
Identities = 58/64 (91%), Gaps = 1/64 (2%)
Strand=Plus/Plus
Query 1177 TTTGTGCTTACTTATGAAGATAAAGACGGTGATTGGATGCTTGTTGGCGATGTTCCATGG 1236
||||| ||||| ||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 911 TTTGTACTTACCTATGAAGATAAGGAAGGAGATTGGATGCTTGTTGGCGATGTTCCATGG 970
Query 1237 GAGA 1240
|||
Sbjct 971 -AGA 973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61096752980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5