BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G22690.1
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481130 jgi|Araly1|481130|fgenesh2_kg.4__190__AT2G22690.1 1725 0.0
Ahg490828 jgi|Araly1|490828|fgenesh2_kg.7__261__AT4G37880.1 531 7e-150
> Ahg481130 jgi|Araly1|481130|fgenesh2_kg.4__190__AT2G22690.1
Length=1370
Score = 1725 bits (934), Expect = 0.0
Identities = 1231/1369 (90%), Gaps = 42/1369 (3%)
Strand=Plus/Plus
Query 34 TCTCTTCTTCCTCCGATTCCATCTTTCTCCGTTTCCGGCGATAATCTTCATCGCTTCTTC 93
|||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||
Sbjct 19 TCTCTTCTTCCTCCGATT-CATCTTTCTCCGTTTCCGGCGATTATCTTCATCGATTCTTC 77
Query 94 AGTTGATTATCTTTAGAATGGAGCTAAAGAATGTCAAAGATGCGTTTGATCGTGTTACCA 153
|| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 78 AGGTGATTATCTGTAGAATGGAGCTAAAGAATGTTAAAGATGCGTTTGATCGTGTTGCCA 137
Query 154 AAAAGCAGAAACTATGCTATAGCAAAACGCATGAAGTGGTAGACAAAATGTCTCAAGAAA 213
|||||||||| || ||||||||||||||||| ||||| ||||| | | ||||||||||||
Sbjct 138 AAAAGCAGAAGCTTTGCTATAGCAAAACGCAGGAAGTTGTAGATAGACTGTCTCAAGAAA 197
Query 214 TCGACAAGGCATTGAAAACGATACAGGAGGATAATCATGAATCTGTTGTTGCTGATCTGA 273
|| ||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 198 TCAACAAGGCATTGGATACGATACATGAGGATAATCATGAATCTGTTGTTGCTGATCTGA 257
Query 274 AGAAAACTTTTGAGGAGATTGCTCCAATCAATCTACTAGAAGCGTCTCAGAAAGAAATAA 333
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||
Sbjct 258 AGAAAACTTTTGAGGAGATTTCTCCAATCAATCAACTAGAAGCGTCTCAGAAAGAAGTAA 317
Query 334 ATGGGGTTCTTACCAAATACCCGAAAGCTCTT-GACAAAACTCTGAATCCAGATATATCG 392
|||| | ||| |||||||| ||||||||| || || ||||||||||||||||||||||||
Sbjct 318 ATGGTGCTCTGACCAAATATCCGAAAGCT-TTGGATAAAACTCTGAATCCAGATATATCG 376
Query 393 ACGGCTTACAGAAACGTTAAGTTTGATAC-TCATACAGTTCATCAGATACTAGCTCAGTT 451
|||||||| |||||| | |||||||| | |||||| ||||| |||||| ||||||||||
Sbjct 377 ACGGCTTATAGAAACATCGAGTTTGAT-CGTCATACTGTTCACCAGATAATAGCTCAGTT 435
Query 452 TTTCTACAGGCAAGGCATGTACGACGTTGGTGACT-GTTTCATTTCCGAGACTGGTGAGG 510
||||||||||||||||||||| || ||||||| | ||||| |||| |||| |||||||
Sbjct 436 TTTCTACAGGCAAGGCATGTATGAAATTGGTGA-TAGTTTCGTTTCTGAGATTGGTGAGC 494
Query 511 TTAAGC---CTGAATCTTCTGTTACTAAAGCTTTCATGGAAATGAATATGATACTTGAAG 567
| ||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 495 CTGAGCTTGTTGAATCTTCTGTTACGAAAGCCTTCATGGAAATGAATATGATACTTGAAG 554
Query 568 CCAT-GAAAGAACGGGATCTCGGACCAGCT-TTGAAATGGGTAGCTTCAAACTCTGACAA 625
|||| | || |||| ||||| ||||||||| || || |||||||||||||||||||||||
Sbjct 555 CCATGGGAA-AACGAGATCTTGGACCAGCTCTT-AAGTGGGTAGCTTCAAACTCTGACAA 612
Query 626 GCTAAAGGAAGCAAAGTCAGATCTTGAGTTGAAACTTCACAGCCTTCACTTTTTGGAGAT 685
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 613 GCTAAAGCAAGCAAAGTCAGATCTTGAGTTGAAACTTCACAGCCTTCACTTCCTGGAAAT 672
Query 686 AGCTAAAGACAAAACCTCCGAAGAAGCTATCAACTACGCGAGAAAACACTTTGCTACGTA 745
||| |||||||||| |||| ||||||||||||||||||||||||||||||||||| | ||
Sbjct 673 AGCAAAAGACAAAAACTCCAAAGAAGCTATCAACTACGCGAGAAAACACTTTGCTGCATA 732
Query 746 TTCAGCAGATAGCTGCTGTTTCCCTGAGATACAGAAACTCATGTGCTCTCTCTTATGGAT 805
|| |||||| ||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 733 TT---CAGATA---GCTGTTTGCCTGAGATTCAGAAACTCATGTGCTCTCTTTTATGGAA 786
Query 806 CAGAAACCTCAATAAATCCCCATACTCAGAGTTCCTCTCACCTGTATTGTGGACCAACGC 865
|||||||||| ||||||||| |||||||| ||||||||||| ||||| |||||||||||
Sbjct 787 CAGAAACCTCGTTAAATCCCCGTACTCAGATTTCCTCTCACCGGTATTATGGACCAACGC 846
Query 866 TGCCAAGGAACTAACCCGACAATACTGCATCCTACTCGGTGAATCACCAGAGAGTCCTTT 925
||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||
Sbjct 847 TGCCAAGGAACTAACCCGACAATACTGCAAACTACTCGGTGAACCACCAGAGAGCCCTTT 906
Query 926 AAGTGTAACAGTTGCAGCAGGTTCACAAGTTTTACCGACGTTTTTGAAGTATTTGAA-CG 984
|||||||||||||||||| |||||||||||| |||||||||||||||| || || || ||
Sbjct 907 AAGTGTAACAGTTGCAGCTGGTTCACAAGTTCTACCGACGTTTTTGAAATACTT-AACCG 965
Query 985 TGCTGCCGGAGAAAAGAAAAGAGTGGCAAACAATGGAGCAACTTCTTGTACCTGTGGAAC 1044
|| |||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 966 TGATGCCAGAGAAAAGACAAGAGTGGCAAACAATGAAGCAACTTCTTGTACCTGTGGAAC 1025
Query 1045 TCTCTGAAGAGTATCGCTTCTACTCGGTCTTTGTCTGCCCTGTCTCTAAAGAACACTCGA 1104
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 1026 TCTCTGAAGAGTATCGCTTCTACTCGGTCTTTGTTTGTCCTGTCTCTAAAGAACACTCTA 1085
Query 1105 GCGAAGATAATCCGCCGATGAGATTGGCTTGCGGTCATGTCCTTTGCAAGCAGTCTATCA 1164
| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1086 GTGAAGATAACCCGCCGATGAGATTGGGTTGCGGTCATGTCCTTTGCAAGCAGTCTATCA 1145
Query 1165 ACAGAATGTCGAGGAATGGTTCAAGGTCGTTCAAGTGTCCTTATTGTCCAACAGATATTG 1224
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 ACAGAATGTCGAGGAATGGATCAAGGTCGTTCAAGTGTCCTTATTGTCCAACAGATATTG 1205
Query 1225 ATGCTTCGCAGTGTAAGCAGTTATATTTTTAGACTAGCTTTACAAC--TT-CTTATGCAG 1281
|| |||||||||||||||||||||||||||||| ||| |||| ||| || ||| | ||
Sbjct 1206 ATTCTTCGCAGTGTAAGCAGTTATATTTTTAGAGTAGTTTTATAACCCTTTCTTTT-CA- 1263
Query 1282 CATT-TCTAAAGAAAGTAGACAAATGTTTCT--T-AT-------CTT-TT-CTTTTATGA 1328
| || || |||||| |||||||||||||| | | || ||| || |||||||||
Sbjct 1264 C-TTCTC-AAAGAAGGTAGACAAATGTTTGTGGTCATTTTTTTTCTTCTTTCTTTTATGA 1321
Query 1329 ACTTGAATTGGGTTCGTGTACAAAAACTATAGTTTGAAATAAAACCTTT 1377
|||||||||| |||||||||||||||||||||||| ||| |||||||||
Sbjct 1322 ACTTGAATTGAGTTCGTGTACAAAAACTATAGTTTTAAACAAAACCTTT 1370
> Ahg490828 jgi|Araly1|490828|fgenesh2_kg.7__261__AT4G37880.1
Length=1580
Score = 531 bits (287), Expect = 7e-150
Identities = 922/1215 (76%), Gaps = 98/1215 (8%)
Strand=Plus/Plus
Query 96 TTGATTATCTTTAGAATGGAGCTAAAGA--ATGTCAAAGATGCGTTTGATCGTGTTACCA 153
|||| |||| | |||||||||||||||| || | || |||||||||||||||||| | |
Sbjct 166 TTGACTATC-TAAGAATGGAGCTAAAGAGCAT-T-AAGGATGCGTTTGATCGTGTTGCGA 222
Query 154 AAAAGCAGAAACTATGC-TATAGCAAAACGCATGAAG-TGGTAGACAA--AATGTCTCAA 209
|||||||| || | | ||||||||||| ||| || | || ||| | ||||||||
Sbjct 223 CCAAGCAGAAGCT-TTCTTATAGCAAAACAAATG-AGATTGT--TCAATTACTGTCTCAA 278
Query 210 GAAATCGACAAGGCATTGA--A-A--AC-G-ATACAGGAGGAT-A-AT-C-ATG---AAT 255
|||||||||||||| |||| | | || | | ||| | || | || | || ||
Sbjct 279 GAAATCGACAAGGCTTTGAGTATATTACAGAAGACACCATCATCAGATACTCTGCTTGAT 338
Query 256 C-T-G---T-T-GTTGCTGATCTGAAGAAAACT-TTTGA-GGAGATTGCTCCAATCAATC 306
| | | | | |||||||| ||||| ||| | ||| | |||||||||||| |||| ||
Sbjct 339 CATAGATCTATCCTTGCTGATGTGAAG-AAAGTGTTT-ATGGAGATTGCTCCTATCACTC 396
Query 307 TACTAGAAGCGT-CTCAGAAAGAAATAAATG-GGGTTCTTACCAAATACCCGAAAGCTCT 364
||| ||||| | || |||||||| || ||| || || | ||||| ||||| |||| | |
Sbjct 397 AACTTGAAGC-TGCTGAGAAAGAACTACATGCGGCTT-TGACCAAGTACCCTAAAG-TTT 453
Query 365 T-GACAAAAC-TCTGAATCCAGATATATCGACGGCTTACAGAAAC---GTTAAGTTTGAT 419
| || |||| ||||||||||| ||||| | ||||||||||||| || |||| |||
Sbjct 454 TGGA-GAAACAGCTGAATCCAGACATATCAAAGGCTTACAGAAACAATGTCGAGTTCGAT 512
Query 420 ACTCATA-CAGTTCATCAGA-TACTAGCTC-AGTTTTTCTACAGGCAAGGCATGTACGAC 476
||||||| | ||| | |||| || | || | | ||||||||| ||||||| |||| |||
Sbjct 513 ACTCATATC-GTTAACCAGATTA-TCGC-CAACTTTTTCTACCGGCAAGGAATGTTTGAC 569
Query 477 GTTGGTGACTGTTTCATTTCCGAGACTGGTGAGGTTAAGCCTGAATCTTCTGTTACTA-A 535
|||||||||||||| || | || |||||| | || | |||| ||| || | |
Sbjct 570 ATTGGTGACTGTTTCGTTACTGAAACTGGT---G--AA-TCAGAATGTTCCACTA-GACA 622
Query 536 AGCTTTCATGGAAATGAATATGATACTTGAAGCCATGAAAGA-ACGGGATCTCGGACCAG 594
| |||| |||||||| || |||||| ||||| ||| |||| ||| ||||| | |||||
Sbjct 623 ATCTTTTGTGGAAATGTATCGGATACTAGAAGCTATG-AAGAGACGTGATCTTGAACCAG 681
Query 595 CT-TTGAAATGGGTAGCTTCAAACTCTGACAAGCTAAAGGAAGCAAAGTCAGATCTTGAG 653
|| || || |||| || || ||||| ||||| |||||| |||||| ||| |||||||||
Sbjct 682 CTCTT-AATTGGGCAGTTTTGAACTCAGACAAACTAAAGCAAGCAAGGTCTGATCTTGAG 740
Query 654 TTGAAACTTCACAGCCTTCACTTTTTGGAGATAGCTAAAGACAAAACCTCCGAAGAAGCT 713
|||| |||||||| || ||||| |||| ||||| ||| ||||| |||| ||||||||
Sbjct 741 ATGAAGCTTCACAGTCTACACTTCCTGGAAATAGCGCAAGGCAAAAACTCCAAAGAAGCT 800
Query 714 ATCAACTACGCGAGAAAACACT-TTGCTACGTATTCAGCAGATAGCTGCTGTTTCCCTGA 772
|||||||||||||||||||| | |||| |||| || |||||||||||| | ||| ||
Sbjct 801 ATCAACTACGCGAGAAAACA-TATTGCCACGT-TT--GCAGATAGCTGCC-T--CCCGGA 853
Query 773 GATACAGAAACTCATGTGCTCTCTCTTATGGATCAGAAACCTCAATAAATCCCCATACTC 832
|| ||||| |||||||| || |||||||||| |||||| ||| ||| ||| || |||||
Sbjct 854 AATCCAGAAGCTCATGTGTTCACTCTTATGGAACAGAAAACTCGATAGATCACCGTACTC 913
Query 833 AGAGTTCCTCTCACCTG-TATTGTGGACCAACGCTGCCAAGGAACTAACCCGACAATACT 891
||||| ||||| || | | | ||||| ||| || | ||| || ||||||||||| ||||
Sbjct 914 CGAGTTTCTCTCTCCCGCTCT-GTGGAACAATGCAGTCAAAGAGCTAACCCGACAGTACT 972
Query 892 GCATCCTACTCGGTGAATCACCAGAGAGTCCTTTAAGTGTAACAGTTGCAGCAGGTTCAC 951
||| |||||||||||||||| | || || || || ||| ||||||| |||| ||| |||
Sbjct 973 GCAACCTACTCGGTGAATCATCTGAAAGCCCGTTGAGTATAACAGTAACAGCGGGTACAC 1032
Query 952 AAGTTTTACC-G-ACGTTTTTGAAGTATTTGAACGTGCTGCCGGAGAA-AAGAAAAGAGT 1008
||| ||||| | || | | ||| || |||||||| || || | || ||| || |
Sbjct 1033 AAGCGTTACCAGTAC-TACT-GAAATACATGAACGTGATGGCGAACAAGAAGCTT-GACT 1089
Query 1009 GGCAAACAATGGAGCAACTTCTTGTACC-TGTGGAACTCTCTGAAGAGTATC-GCTTCTA 1066
|||| || ||||| ||||||| ||| | || | |||| || || |||| || | ||| |
Sbjct 1090 GGCAGACCATGGAACAACTTCCTGT-CGATGCGCAACTATCAGAGGAGTTTCAG-TTCCA 1147
Query 1067 CTCGGTCTTTGTCTGCCCTGTCTCTAAAGAACACTCGAGCGAAGATAATCCGCCGATGA- 1125
|| || |||||||| || |||||||||||||| || || || || || || || ||||
Sbjct 1148 TTCAGTGTTTGTCTGTCCAGTCTCTAAAGAACAGTCAAGTGACGACAACCCTCCAATGAT 1207
Query 1126 GATTGGCTTGCGGTCATGTCCTTTGCAAGCAGTCTATCAACAGAATGTCGAGGAATGGTT 1185
||| | |||| || ||||| |||||||||||| | ||||||| |||||| | |||||| |
Sbjct 1208 GAT-GTCTTGTGGACATGTGCTTTGCAAGCAGACGATCAACAAAATGTCAAAGAATGGCT 1266
Query 1186 C-AAG--GTCGTTCAAGTGTCCTTATTGTCCAACAGATATTGA--TGCTTCGCAG-TGTA 1239
| ||| ||| ||||||||||| ||||| ||||| ||| | || | || || || ||||
Sbjct 1267 CTAAGTCGTCTTTCAAGTGTCCGTATTGCCCAACCGATGTAGACAT-CT-CG-AGGTGTA 1323
Query 1240 AGCAGTTATATTTTT 1254
||||||| | ||||
Sbjct 1324 GGCAGTTACACTTTT 1338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51802733200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5