BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G22720.2 Length=2263 Score E Sequences producing significant alignments: (Bits) Value Ahg932232 jgi|Araly1|932232|scaffold_400220.1 296 4e-79 > Ahg932232 jgi|Araly1|932232|scaffold_400220.1 Length=403 Score = 296 bits (160), Expect = 4e-79 Identities = 215/239 (90%), Gaps = 14/239 (6%) Strand=Plus/Plus Query 1 ATGCAAGTGAGAACT-TTTGAGAGGCGCAACAACAAGATGGCGCATAATAGCAAAAGACC 59 ||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||| Sbjct 21 ATGCAAGTGAGAA-TGTTTGAGAGGCGCAACAAC---ATGGCGCATAATAGCAAAAGACC 76 Query 60 TAATTTTGCTTCTGGGTCCTTGGATTTTCTTCCTCTTCCTCTTTATTCCCCTCAAAACCT 119 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 77 TAATTTTGCTTCAGGGTCCTTGGATTTTCTTCCTCTTCCTCTTTATTCCCCACAAAACCT 136 Query 120 AGGAGCCCAACGAGAGCACCCCTTTCctcttcttctatatccctttttatctcttcgcag 179 | | || ||| |||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 137 A-AATCCAAACCAGAGTACCCCTCTCCTCTTCTTCTATATCCCTTTTTATCTCTTCGCAG 195 Query 180 ctttctctcctctctcagatctatact-ctcttctc--C-TT-CACAATCGTTCGTTTT 233 ||||||||| ||||||||||||||| | || ||||| | || | |||||||||| ||| Sbjct 196 CTTTCTCTCTTCTCTCAGATCTATA-TGCT-TTCTCTTCGTTTC-CAATCGTTCGCTTT 251 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85207878065 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5