BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G22720.2

Length=2263
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg932232 jgi|Araly1|932232|scaffold_400220.1                        296    4e-79


> Ahg932232 jgi|Araly1|932232|scaffold_400220.1
Length=403

 Score =  296 bits (160),  Expect = 4e-79
 Identities = 215/239 (90%), Gaps = 14/239 (6%)
 Strand=Plus/Plus

Query  1    ATGCAAGTGAGAACT-TTTGAGAGGCGCAACAACAAGATGGCGCATAATAGCAAAAGACC  59
            ||||||||||||| | ||||||||||||||||||   |||||||||||||||||||||||
Sbjct  21   ATGCAAGTGAGAA-TGTTTGAGAGGCGCAACAAC---ATGGCGCATAATAGCAAAAGACC  76

Query  60   TAATTTTGCTTCTGGGTCCTTGGATTTTCTTCCTCTTCCTCTTTATTCCCCTCAAAACCT  119
            |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  77   TAATTTTGCTTCAGGGTCCTTGGATTTTCTTCCTCTTCCTCTTTATTCCCCACAAAACCT  136

Query  120  AGGAGCCCAACGAGAGCACCCCTTTCctcttcttctatatccctttttatctcttcgcag  179
            |  | || ||| |||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct  137  A-AATCCAAACCAGAGTACCCCTCTCCTCTTCTTCTATATCCCTTTTTATCTCTTCGCAG  195

Query  180  ctttctctcctctctcagatctatact-ctcttctc--C-TT-CACAATCGTTCGTTTT  233
            ||||||||| ||||||||||||||| | || |||||  | || | |||||||||| |||
Sbjct  196  CTTTCTCTCTTCTCTCAGATCTATA-TGCT-TTCTCTTCGTTTC-CAATCGTTCGCTTT  251



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 85207878065


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5